Wall clock time and date at job start Tue Mar 31 2020 06:03:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52993 * 109.47411 * 2 1 4 4 O 1.42898 * 109.47058 * 239.99687 * 2 1 3 5 5 C 1.50704 * 109.46749 * 120.00219 * 2 1 3 6 6 C 1.38414 * 119.92544 * 329.99381 * 5 2 1 7 7 C 1.38372 * 120.28986 * 180.02562 * 6 5 2 8 8 C 1.37958 * 120.14403 * 0.02562 * 7 6 5 9 9 C 1.39585 * 119.85656 * 359.97438 * 8 7 6 10 10 C 1.47965 * 120.14514 * 180.02562 * 9 8 7 11 11 C 1.39892 * 119.44933 * 4.97533 * 10 9 8 12 12 C 1.36609 * 119.46463 * 179.71770 * 11 10 9 13 13 C 1.41305 * 118.41271 * 0.56924 * 12 11 10 14 14 C 1.41050 * 120.55501 * 179.70778 * 13 12 11 15 15 H 1.08005 * 120.00155 * 24.56985 * 14 13 12 16 16 C 1.40026 * 119.99995 * 204.57173 * 14 13 12 17 17 N 1.30789 * 120.00389 * 17.20685 * 16 14 13 18 18 Si 1.86804 * 119.99969 * 197.21186 * 16 14 13 19 19 H 1.48503 * 109.46661 * 265.17341 * 18 16 14 20 20 H 1.48500 * 109.47265 * 25.17477 * 18 16 14 21 21 H 1.48496 * 109.47148 * 145.17547 * 18 16 14 22 22 C 1.40957 * 118.89200 * 359.42883 * 13 12 11 23 23 N 1.31259 * 120.39676 * 0.30167 * 22 13 12 24 24 C 1.37915 * 119.92839 * 150.27603 * 5 2 1 25 25 H 1.09002 * 109.46868 * 300.00443 * 1 2 3 26 26 H 1.09005 * 109.46756 * 60.00052 * 1 2 3 27 27 H 1.08997 * 109.47403 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47389 * 179.97438 * 3 2 1 29 29 H 1.08997 * 109.47546 * 300.00221 * 3 2 1 30 30 H 1.09002 * 109.47466 * 59.99923 * 3 2 1 31 31 H 0.96701 * 114.00298 * 300.00769 * 4 2 1 32 32 H 1.07998 * 119.85242 * 0.03007 * 6 5 2 33 33 H 1.08000 * 119.92041 * 179.97438 * 7 6 5 34 34 H 1.07997 * 120.06925 * 179.97438 * 8 7 6 35 35 H 1.07995 * 120.26985 * 359.97438 * 11 10 9 36 36 H 1.08003 * 120.79679 * 180.29521 * 12 11 10 37 37 H 0.96994 * 120.00260 * 179.97438 * 17 16 14 38 38 H 1.07996 * 119.79931 * 180.27270 * 22 13 12 39 39 H 1.08008 * 120.07372 * 359.97438 * 24 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 8 2.0063 -0.6737 -1.1667 5 6 2.0323 -0.7105 1.2305 6 6 1.2830 -0.6896 2.3941 7 6 1.7372 -1.3390 3.5284 8 6 2.9415 -2.0115 3.5063 9 6 3.7021 -2.0364 2.3361 10 6 4.9945 -2.7563 2.3051 11 6 5.3963 -3.4967 3.4219 12 6 6.5867 -4.1662 3.3914 13 6 7.3801 -4.0743 2.2257 14 6 8.6201 -4.7421 2.1478 15 1 8.8036 -5.6133 2.7592 16 6 9.6131 -4.2756 1.2778 17 7 9.5427 -3.0619 0.7956 18 14 11.0386 -5.3868 0.8057 19 1 12.1918 -5.1204 1.7025 20 1 10.6248 -6.8067 0.9398 21 1 11.4322 -5.1166 -0.6004 22 6 6.9091 -3.3088 1.1399 23 7 5.7550 -2.6882 1.2159 24 6 3.2402 -1.3751 1.1964 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 3.1301 1.4424 0.0005 29 1 1.6768 1.9563 -0.8899 30 1 1.6768 1.9563 0.8900 31 1 1.7209 -1.5953 -1.2329 32 1 0.3396 -0.1643 2.4167 33 1 1.1479 -1.3185 4.4333 34 1 3.2951 -2.5175 4.3924 35 1 4.7686 -3.5422 4.2995 36 1 6.9157 -4.7481 4.2397 37 1 10.2307 -2.7386 0.1932 38 1 7.5015 -3.2322 0.2402 39 1 3.8259 -1.3872 0.2890 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240404614.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:59 Heat of formation + Delta-G solvation = -14.718938 kcal Electronic energy + Delta-G solvation = -21136.736869 eV Core-core repulsion = 18008.021656 eV Total energy + Delta-G solvation = -3128.715213 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.60530 -38.35029 -36.78172 -34.26658 -32.70825 -31.43019 -30.83887 -29.85011 -28.57809 -27.34111 -25.48539 -23.12506 -22.53459 -21.50793 -20.63512 -19.49262 -17.64586 -17.30074 -16.03762 -15.63928 -15.15472 -14.81708 -14.64093 -14.39726 -13.91857 -13.65122 -13.29321 -12.91345 -12.84773 -12.45562 -12.27713 -12.13355 -12.07411 -11.79020 -11.56212 -11.53564 -11.35589 -11.28710 -11.05625 -10.93306 -10.68610 -10.39390 -10.13157 -9.81763 -9.57331 -8.70418 -8.44434 -8.34438 -7.95258 -7.25661 -7.08167 -4.58380 1.53871 1.87672 2.67360 2.88951 2.93923 2.98669 3.10887 3.72165 4.18286 4.32767 4.60752 4.79859 4.97473 5.13951 5.32466 5.36581 5.57627 5.60185 5.63520 5.74936 5.77684 5.89260 5.96347 6.02425 6.05880 6.16232 6.30055 6.36730 6.44281 6.53928 6.68540 6.79318 6.88181 6.92210 7.02306 7.18185 7.24041 7.44341 7.64062 7.71142 7.80837 7.93206 8.15378 8.50579 8.57944 9.63473 9.85965 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.025793 B = 0.003827 C = 0.003443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.294388 B = 7314.802621 C = 8130.104822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.171 3.829 3 C -0.133 4.133 4 O -0.554 6.554 5 C -0.122 4.122 6 C -0.144 4.144 7 C -0.119 4.119 8 C -0.136 4.136 9 C 0.021 3.979 10 C -0.016 4.016 11 C -0.109 4.109 12 C -0.206 4.206 13 C 0.068 3.932 14 C -0.434 4.434 15 H 0.085 0.915 16 C 0.072 3.928 17 N -0.773 5.773 18 Si 0.917 3.083 19 H -0.267 1.267 20 H -0.257 1.257 21 H -0.271 1.271 22 C 0.044 3.956 23 N -0.453 5.453 24 C -0.094 4.094 25 H 0.067 0.933 26 H 0.061 0.939 27 H 0.059 0.941 28 H 0.066 0.934 29 H 0.061 0.939 30 H 0.068 0.932 31 H 0.377 0.623 32 H 0.113 0.887 33 H 0.113 0.887 34 H 0.118 0.882 35 H 0.101 0.899 36 H 0.104 0.896 37 H 0.289 0.711 38 H 0.152 0.848 39 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.166 3.456 0.209 11.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.130 3.870 3 C -0.191 4.191 4 O -0.360 6.360 5 C -0.122 4.122 6 C -0.163 4.163 7 C -0.137 4.137 8 C -0.155 4.155 9 C 0.020 3.980 10 C -0.147 4.147 11 C -0.129 4.129 12 C -0.230 4.230 13 C 0.063 3.937 14 C -0.462 4.462 15 H 0.103 0.897 16 C -0.149 4.149 17 N -0.397 5.397 18 Si 0.740 3.260 19 H -0.192 1.192 20 H -0.181 1.181 21 H -0.196 1.196 22 C -0.124 4.124 23 N -0.160 5.160 24 C -0.113 4.113 25 H 0.086 0.914 26 H 0.081 0.919 27 H 0.078 0.922 28 H 0.085 0.915 29 H 0.080 0.920 30 H 0.087 0.913 31 H 0.224 0.776 32 H 0.131 0.869 33 H 0.132 0.868 34 H 0.136 0.864 35 H 0.119 0.881 36 H 0.122 0.878 37 H 0.101 0.899 38 H 0.169 0.831 39 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -11.096 4.723 -0.717 12.081 hybrid contribution 0.822 -1.478 0.882 1.908 sum -10.274 3.245 0.165 10.776 Atomic orbital electron populations 1.22524 0.95744 1.02481 1.02410 1.19919 0.91935 0.92390 0.82717 1.21726 1.02566 0.92945 1.01828 1.86539 1.77427 1.29001 1.43054 1.20349 0.96021 1.00207 0.95628 1.20863 0.99938 1.02402 0.93072 1.20865 0.96361 0.98724 0.97773 1.21199 0.95185 1.01266 0.97824 1.18723 0.92399 0.94249 0.92645 1.18831 0.95837 1.06832 0.93189 1.21189 0.96587 0.97676 0.97459 1.20991 0.97352 1.06478 0.98193 1.18646 0.92943 0.91113 0.90954 1.19673 0.96872 1.10900 1.18801 0.89659 1.26105 1.00071 0.94888 0.93865 1.69752 1.32769 1.14612 1.22533 0.86147 0.79898 0.81181 0.78795 1.19235 1.18098 1.19575 1.22957 0.91636 0.98968 0.98838 1.67124 1.05706 1.17816 1.25383 1.21134 0.94586 0.96445 0.99086 0.91387 0.91947 0.92217 0.91509 0.92032 0.91328 0.77570 0.86867 0.86846 0.86400 0.88095 0.87831 0.89925 0.83112 0.84658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.83 8.12 37.16 0.30 -1.53 16 2 C 0.17 2.30 1.23 -91.77 -0.11 2.18 16 3 C -0.13 -1.71 8.83 37.15 0.33 -1.38 16 4 O -0.55 -8.05 11.97 -35.23 -0.42 -8.47 16 5 C -0.12 -1.91 4.80 -104.67 -0.50 -2.42 16 6 C -0.14 -2.06 9.14 -39.47 -0.36 -2.42 16 7 C -0.12 -1.77 10.03 -39.63 -0.40 -2.17 16 8 C -0.14 -2.37 9.41 -39.18 -0.37 -2.74 16 9 C 0.02 0.43 5.88 -104.89 -0.62 -0.19 16 10 C -0.02 -0.39 6.73 -82.75 -0.56 -0.94 16 11 C -0.11 -2.46 9.38 -39.55 -0.37 -2.83 16 12 C -0.21 -4.90 9.88 -39.01 -0.39 -5.28 16 13 C 0.07 1.77 5.58 -106.64 -0.60 1.17 16 14 C -0.43 -10.76 9.06 -37.85 -0.34 -11.10 16 15 H 0.09 2.00 7.90 -52.48 -0.41 1.58 16 16 C 0.07 1.68 5.16 -17.33 -0.09 1.59 16 17 N -0.77 -18.84 10.96 55.55 0.61 -18.23 16 18 Si 0.92 17.23 29.59 -169.99 -5.03 12.20 16 19 H -0.27 -4.96 7.11 56.52 0.40 -4.56 16 20 H -0.26 -4.80 7.11 56.52 0.40 -4.40 16 21 H -0.27 -5.00 7.11 56.52 0.40 -4.59 16 22 C 0.04 1.17 9.88 -16.77 -0.17 1.00 16 23 N -0.45 -11.61 9.40 -9.10 -0.09 -11.70 16 24 C -0.09 -1.80 8.87 -39.18 -0.35 -2.15 16 25 H 0.07 0.64 6.50 -51.93 -0.34 0.30 16 26 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.38 4.47 9.04 45.56 0.41 4.88 16 32 H 0.11 1.31 6.15 -52.49 -0.32 0.99 16 33 H 0.11 1.36 8.06 -52.49 -0.42 0.93 16 34 H 0.12 1.91 6.18 -52.49 -0.32 1.59 16 35 H 0.10 1.95 6.18 -52.49 -0.32 1.62 16 36 H 0.10 2.24 8.06 -52.48 -0.42 1.82 16 37 H 0.29 6.34 8.29 -40.82 -0.34 6.00 16 38 H 0.15 4.03 6.17 -52.49 -0.32 3.70 16 39 H 0.14 2.84 6.96 -52.48 -0.37 2.47 16 LS Contribution 325.41 15.07 4.90 4.90 Total: -1.00 -27.95 325.41 -8.70 -36.65 By element: Atomic # 1 Polarization: 17.96 SS G_CDS: -4.09 Total: 13.87 kcal Atomic # 6 Polarization: -24.63 SS G_CDS: -4.58 Total: -29.22 kcal Atomic # 7 Polarization: -30.46 SS G_CDS: 0.52 Total: -29.93 kcal Atomic # 8 Polarization: -8.05 SS G_CDS: -0.42 Total: -8.47 kcal Atomic # 14 Polarization: 17.23 SS G_CDS: -5.03 Total: 12.20 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -27.95 -8.70 -36.65 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240404614.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.931 kcal (2) G-P(sol) polarization free energy of solvation -27.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds