Wall clock time and date at job start Tue Mar 31 2020 06:03:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52993 * 109.47411 * 2 1 4 4 O 1.42898 * 109.47058 * 239.99687 * 2 1 3 5 5 C 1.50704 * 109.46749 * 120.00219 * 2 1 3 6 6 C 1.38414 * 119.92544 * 329.99381 * 5 2 1 7 7 C 1.38372 * 120.28986 * 180.02562 * 6 5 2 8 8 C 1.37958 * 120.14403 * 0.02562 * 7 6 5 9 9 C 1.39585 * 119.85656 * 359.97438 * 8 7 6 10 10 C 1.47965 * 120.14514 * 180.02562 * 9 8 7 11 11 C 1.39892 * 119.44933 * 4.97533 * 10 9 8 12 12 C 1.36609 * 119.46463 * 179.71770 * 11 10 9 13 13 C 1.41305 * 118.41271 * 0.56924 * 12 11 10 14 14 C 1.41050 * 120.55501 * 179.70778 * 13 12 11 15 15 H 1.08005 * 120.00155 * 24.56985 * 14 13 12 16 16 C 1.40026 * 119.99995 * 204.57173 * 14 13 12 17 17 N 1.30789 * 120.00389 * 17.20685 * 16 14 13 18 18 Si 1.86804 * 119.99969 * 197.21186 * 16 14 13 19 19 H 1.48503 * 109.46661 * 265.17341 * 18 16 14 20 20 H 1.48500 * 109.47265 * 25.17477 * 18 16 14 21 21 H 1.48496 * 109.47148 * 145.17547 * 18 16 14 22 22 C 1.40957 * 118.89200 * 359.42883 * 13 12 11 23 23 N 1.31259 * 120.39676 * 0.30167 * 22 13 12 24 24 C 1.37915 * 119.92839 * 150.27603 * 5 2 1 25 25 H 1.09002 * 109.46868 * 300.00443 * 1 2 3 26 26 H 1.09005 * 109.46756 * 60.00052 * 1 2 3 27 27 H 1.08997 * 109.47403 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47389 * 179.97438 * 3 2 1 29 29 H 1.08997 * 109.47546 * 300.00221 * 3 2 1 30 30 H 1.09002 * 109.47466 * 59.99923 * 3 2 1 31 31 H 0.96701 * 114.00298 * 300.00769 * 4 2 1 32 32 H 1.07998 * 119.85242 * 0.03007 * 6 5 2 33 33 H 1.08000 * 119.92041 * 179.97438 * 7 6 5 34 34 H 1.07997 * 120.06925 * 179.97438 * 8 7 6 35 35 H 1.07995 * 120.26985 * 359.97438 * 11 10 9 36 36 H 1.08003 * 120.79679 * 180.29521 * 12 11 10 37 37 H 0.96994 * 120.00260 * 179.97438 * 17 16 14 38 38 H 1.07996 * 119.79931 * 180.27270 * 22 13 12 39 39 H 1.08008 * 120.07372 * 359.97438 * 24 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 8 2.0063 -0.6737 -1.1667 5 6 2.0323 -0.7105 1.2305 6 6 1.2830 -0.6896 2.3941 7 6 1.7372 -1.3390 3.5284 8 6 2.9415 -2.0115 3.5063 9 6 3.7021 -2.0364 2.3361 10 6 4.9945 -2.7563 2.3051 11 6 5.3963 -3.4967 3.4219 12 6 6.5867 -4.1662 3.3914 13 6 7.3801 -4.0743 2.2257 14 6 8.6201 -4.7421 2.1478 15 1 8.8036 -5.6133 2.7592 16 6 9.6131 -4.2756 1.2778 17 7 9.5427 -3.0619 0.7956 18 14 11.0386 -5.3868 0.8057 19 1 12.1918 -5.1204 1.7025 20 1 10.6248 -6.8067 0.9398 21 1 11.4322 -5.1166 -0.6004 22 6 6.9091 -3.3088 1.1399 23 7 5.7550 -2.6882 1.2159 24 6 3.2402 -1.3751 1.1964 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 3.1301 1.4424 0.0005 29 1 1.6768 1.9563 -0.8899 30 1 1.6768 1.9563 0.8900 31 1 1.7209 -1.5953 -1.2329 32 1 0.3396 -0.1643 2.4167 33 1 1.1479 -1.3185 4.4333 34 1 3.2951 -2.5175 4.3924 35 1 4.7686 -3.5422 4.2995 36 1 6.9157 -4.7481 4.2397 37 1 10.2307 -2.7386 0.1932 38 1 7.5015 -3.2322 0.2402 39 1 3.8259 -1.3872 0.2890 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240404614.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:58 Heat of formation + Delta-G solvation = -30.997458 kcal Electronic energy + Delta-G solvation = -21137.442758 eV Core-core repulsion = 18008.021656 eV Total energy + Delta-G solvation = -3129.421103 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.96102 -40.00767 -38.04184 -36.02182 -33.93820 -33.18006 -32.41154 -31.23162 -30.09028 -28.30328 -27.19247 -24.54590 -24.14858 -23.10040 -22.13221 -20.79608 -19.47370 -18.58990 -17.40635 -17.24159 -16.59759 -16.41335 -15.82783 -15.74717 -15.41548 -15.05538 -14.73289 -14.56161 -14.32851 -13.66467 -13.62646 -13.43692 -13.29066 -13.11244 -13.02260 -12.95274 -12.76992 -12.72425 -12.48807 -12.37141 -12.01408 -11.85198 -11.51456 -11.28882 -10.94632 -10.40111 -10.20109 -9.83092 -9.63118 -8.97250 -8.82332 -6.46397 0.06660 0.55725 0.98076 1.08569 1.37693 1.52115 1.56776 2.14153 2.60028 3.02916 3.32159 3.68862 3.73528 3.81389 3.97738 4.16754 4.20850 4.29939 4.41706 4.47056 4.57734 4.70274 4.75761 4.77822 4.87101 4.96561 4.97664 5.01034 5.08392 5.16425 5.22688 5.25263 5.30872 5.33585 5.53721 5.65436 5.71004 5.80908 5.97932 6.06520 6.21325 6.30723 6.66177 6.70797 6.80982 7.73550 8.14194 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.025793 B = 0.003827 C = 0.003443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.294388 B = 7314.802621 C = 8130.104822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.164 3.836 3 C -0.135 4.135 4 O -0.575 6.575 5 C -0.120 4.120 6 C -0.125 4.125 7 C -0.112 4.112 8 C -0.136 4.136 9 C -0.020 4.020 10 C -0.021 4.021 11 C -0.114 4.114 12 C -0.213 4.213 13 C 0.040 3.960 14 C -0.466 4.466 15 H 0.092 0.908 16 C 0.033 3.967 17 N -0.811 5.811 18 Si 0.994 3.006 19 H -0.258 1.258 20 H -0.253 1.253 21 H -0.265 1.265 22 C 0.013 3.987 23 N -0.475 5.475 24 C -0.111 4.111 25 H 0.088 0.912 26 H 0.072 0.928 27 H 0.064 0.936 28 H 0.036 0.964 29 H 0.074 0.926 30 H 0.089 0.911 31 H 0.385 0.615 32 H 0.155 0.845 33 H 0.156 0.844 34 H 0.130 0.870 35 H 0.138 0.862 36 H 0.123 0.877 37 H 0.297 0.703 38 H 0.134 0.866 39 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.903 3.966 1.768 14.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.124 3.876 3 C -0.192 4.192 4 O -0.382 6.382 5 C -0.120 4.120 6 C -0.143 4.143 7 C -0.129 4.129 8 C -0.155 4.155 9 C -0.021 4.021 10 C -0.154 4.154 11 C -0.133 4.133 12 C -0.238 4.238 13 C 0.035 3.965 14 C -0.494 4.494 15 H 0.110 0.890 16 C -0.185 4.185 17 N -0.435 5.435 18 Si 0.813 3.187 19 H -0.183 1.183 20 H -0.177 1.177 21 H -0.189 1.189 22 C -0.153 4.153 23 N -0.183 5.183 24 C -0.130 4.130 25 H 0.107 0.893 26 H 0.091 0.909 27 H 0.083 0.917 28 H 0.055 0.945 29 H 0.093 0.907 30 H 0.108 0.892 31 H 0.233 0.767 32 H 0.173 0.827 33 H 0.173 0.827 34 H 0.148 0.852 35 H 0.155 0.845 36 H 0.141 0.859 37 H 0.108 0.892 38 H 0.151 0.849 39 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -13.826 5.229 0.834 14.806 hybrid contribution 1.387 -1.474 0.440 2.071 sum -12.440 3.755 1.274 13.056 Atomic orbital electron populations 1.22461 0.92604 1.03317 1.03960 1.20167 0.94177 0.92011 0.81237 1.21781 1.00737 0.93141 1.03564 1.86521 1.78187 1.29810 1.43731 1.20633 0.94628 0.99196 0.97531 1.21373 1.00610 1.00620 0.91731 1.21341 0.95252 0.96847 0.99486 1.21407 0.95851 1.01423 0.96825 1.18795 0.92116 0.96432 0.94759 1.19551 0.96768 1.06340 0.92733 1.21536 0.96611 0.96790 0.98390 1.21320 0.97684 1.06621 0.98134 1.18937 0.94124 0.91877 0.91581 1.19949 0.97300 1.11621 1.20578 0.88964 1.27033 1.02515 0.95949 0.92983 1.69814 1.34100 1.16385 1.23230 0.85012 0.76207 0.78886 0.78609 1.18265 1.17671 1.18944 1.22776 0.92406 1.01121 0.99009 1.67111 1.05896 1.18378 1.26907 1.20977 0.96127 0.98152 0.97768 0.89338 0.90934 0.91727 0.94466 0.90676 0.89240 0.76656 0.82707 0.82667 0.85219 0.84459 0.85899 0.89219 0.84873 0.88018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.81 8.12 71.98 0.58 -2.23 16 2 C 0.16 4.10 1.23 -11.54 -0.01 4.09 16 3 C -0.14 -3.24 8.83 71.98 0.64 -2.60 16 4 O -0.57 -16.74 11.97 -148.98 -1.78 -18.52 16 5 C -0.12 -3.54 4.80 -19.90 -0.10 -3.63 16 6 C -0.13 -3.00 9.14 22.34 0.20 -2.79 16 7 C -0.11 -2.79 10.03 22.24 0.22 -2.56 16 8 C -0.14 -4.43 9.41 22.53 0.21 -4.22 16 9 C -0.02 -0.84 5.88 -20.04 -0.12 -0.95 16 10 C -0.02 -1.04 6.73 41.94 0.28 -0.76 16 11 C -0.11 -5.18 9.38 22.29 0.21 -4.97 16 12 C -0.21 -10.39 9.88 22.64 0.22 -10.16 16 13 C 0.04 2.15 5.58 -21.17 -0.12 2.04 16 14 C -0.47 -24.15 9.06 23.39 0.21 -23.94 16 15 H 0.09 4.46 7.90 -2.91 -0.02 4.43 16 16 C 0.03 1.59 5.16 85.28 0.44 2.03 16 17 N -0.81 -41.70 10.96 21.84 0.24 -41.47 16 18 Si 0.99 36.03 29.59 68.60 2.03 38.06 16 19 H -0.26 -8.93 7.11 99.48 0.71 -8.22 16 20 H -0.25 -8.92 7.11 99.48 0.71 -8.22 16 21 H -0.27 -9.24 7.11 99.48 0.71 -8.54 16 22 C 0.01 0.72 9.88 85.44 0.84 1.56 16 23 N -0.47 -26.06 9.40 -182.71 -1.72 -27.78 16 24 C -0.11 -4.36 8.87 22.53 0.20 -4.16 16 25 H 0.09 1.14 6.50 -2.39 -0.02 1.12 16 26 H 0.07 1.12 8.14 -2.38 -0.02 1.10 16 27 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.38 9.28 9.04 -74.06 -0.67 8.61 16 32 H 0.16 2.49 6.15 -2.91 -0.02 2.48 16 33 H 0.16 2.66 8.06 -2.91 -0.02 2.64 16 34 H 0.13 3.81 6.18 -2.91 -0.02 3.80 16 35 H 0.14 5.08 6.18 -2.91 -0.02 5.06 16 36 H 0.12 5.35 8.06 -2.91 -0.02 5.32 16 37 H 0.30 13.65 8.29 -92.71 -0.77 12.88 16 38 H 0.13 7.80 6.17 -2.91 -0.02 7.78 16 39 H 0.10 4.61 6.96 -2.91 -0.02 4.59 16 Total: -1.00 -65.87 325.41 3.10 -62.77 By element: Atomic # 1 Polarization: 39.79 SS G_CDS: 0.41 Total: 40.20 kcal Atomic # 6 Polarization: -57.20 SS G_CDS: 3.92 Total: -53.27 kcal Atomic # 7 Polarization: -67.76 SS G_CDS: -1.48 Total: -69.24 kcal Atomic # 8 Polarization: -16.74 SS G_CDS: -1.78 Total: -18.52 kcal Atomic # 14 Polarization: 36.03 SS G_CDS: 2.03 Total: 38.06 kcal Total: -65.87 3.10 -62.77 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240404614.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.774 kcal (2) G-P(sol) polarization free energy of solvation -65.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds