Wall clock time and date at job start Tue Mar 31 2020 06:04:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.46775 * 2 1 4 4 O 1.42904 * 109.46801 * 240.00569 * 2 1 3 5 5 C 1.50693 * 109.47455 * 120.00493 * 2 1 3 6 6 C 1.38428 * 119.92260 * 329.97583 * 5 2 1 7 7 C 1.38371 * 120.30490 * 179.97438 * 6 5 2 8 8 C 1.37939 * 120.15364 * 359.76760 * 7 6 5 9 9 C 1.39654 * 119.84645 * 0.53050 * 8 7 6 10 10 C 1.47819 * 120.15280 * 179.72208 * 9 8 7 11 11 N 1.32579 * 119.98700 * 136.15209 * 10 9 8 12 12 C 1.31746 * 121.71749 * 180.02562 * 11 10 9 13 13 C 1.38867 * 121.50605 * 359.97438 * 12 11 10 14 14 C 1.36882 * 119.79984 * 0.27755 * 13 12 11 15 15 C 1.41133 * 118.39223 * 359.48974 * 14 13 12 16 16 C 1.40888 * 120.71688 * 180.23610 * 15 14 13 17 17 H 1.08001 * 119.99263 * 151.85739 * 16 15 14 18 18 C 1.40071 * 120.00255 * 331.86251 * 16 15 14 19 19 N 1.30770 * 119.99811 * 348.01637 * 18 16 15 20 20 Si 1.86803 * 119.99887 * 168.01612 * 18 16 15 21 21 H 1.48501 * 109.46849 * 90.00006 * 20 18 16 22 22 H 1.48502 * 109.47091 * 209.99972 * 20 18 16 23 23 H 1.48499 * 109.47243 * 329.99948 * 20 18 16 24 24 C 1.37890 * 119.92646 * 149.99903 * 5 2 1 25 25 H 1.09004 * 109.47189 * 299.99396 * 1 2 3 26 26 H 1.09003 * 109.47930 * 59.99614 * 1 2 3 27 27 H 1.09004 * 109.47211 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46844 * 180.02562 * 3 2 1 29 29 H 1.08998 * 109.47021 * 300.00380 * 3 2 1 30 30 H 1.08998 * 109.46619 * 60.00732 * 3 2 1 31 31 H 0.96694 * 113.99642 * 179.97438 * 4 2 1 32 32 H 1.07999 * 119.84613 * 0.02562 * 6 5 2 33 33 H 1.08002 * 119.92464 * 180.02562 * 7 6 5 34 34 H 1.08002 * 120.07939 * 180.25373 * 8 7 6 35 35 H 1.08000 * 119.24528 * 180.02562 * 12 11 10 36 36 H 1.07999 * 120.10110 * 180.02562 * 13 12 11 37 37 H 1.08003 * 120.80629 * 179.69921 * 14 13 12 38 38 H 0.97008 * 119.99839 * 180.02562 * 19 18 16 39 39 H 1.08004 * 120.07922 * 359.97438 * 24 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 8 2.0062 -0.6736 -1.1669 5 6 2.0324 -0.7105 1.2303 6 6 1.2832 -0.6893 2.3942 7 6 1.7368 -1.3395 3.5283 8 6 2.9377 -2.0177 3.5047 9 6 3.7016 -2.0379 2.3358 10 6 4.9925 -2.7574 2.3048 11 7 5.3004 -3.5215 1.2660 12 6 6.4408 -4.1782 1.2031 13 6 7.3793 -4.1021 2.2237 14 6 7.1227 -3.3349 3.3280 15 6 5.9014 -2.6301 3.3865 16 6 5.5893 -1.8221 4.4976 17 1 4.9379 -0.9689 4.3788 18 6 6.1237 -2.1254 5.7564 19 7 6.7144 -3.2749 5.9562 20 14 5.9927 -0.8879 7.1495 21 1 4.7345 -1.1219 7.9027 22 1 7.1530 -1.0459 8.0627 23 1 5.9865 0.4879 6.5906 24 6 3.2374 -1.3797 1.1944 25 1 -0.3634 0.5138 0.8901 26 1 -0.3635 0.5139 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 3.1299 1.4426 -0.0005 29 1 1.6765 1.9564 -0.8899 30 1 1.6766 1.9563 0.8901 31 1 2.9702 -0.7114 -1.2332 32 1 0.3401 -0.1637 2.4169 33 1 1.1471 -1.3194 4.4330 34 1 3.2885 -2.5282 4.3895 35 1 6.6508 -4.7890 0.3375 36 1 8.3071 -4.6497 2.1484 37 1 7.8391 -3.2679 4.1335 38 1 7.0842 -3.4851 6.8280 39 1 3.8210 -1.3955 0.2857 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240404636.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:01 Heat of formation + Delta-G solvation = -12.201823 kcal Electronic energy + Delta-G solvation = -21789.575444 eV Core-core repulsion = 18660.969381 eV Total energy + Delta-G solvation = -3128.606063 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.55826 -38.36349 -36.62598 -34.22398 -32.80849 -31.31781 -30.65032 -29.75273 -28.29709 -27.23083 -25.74055 -22.94077 -22.56270 -21.41002 -20.67011 -19.44009 -17.56127 -17.26417 -15.71744 -15.55066 -15.10243 -14.99053 -14.48964 -14.39490 -13.89978 -13.57989 -13.29041 -13.02787 -12.69937 -12.37431 -12.27125 -12.08990 -11.85881 -11.68024 -11.58690 -11.55358 -11.42304 -11.14500 -11.08390 -10.73016 -10.59003 -10.46821 -9.91099 -9.71124 -9.48593 -8.61680 -8.23683 -8.11166 -8.00838 -7.38546 -6.94080 -4.58805 1.80042 2.04141 2.59569 2.91951 2.95008 2.99805 3.11244 3.76017 4.30120 4.47781 4.56751 4.88433 5.04845 5.15553 5.40859 5.49678 5.63382 5.64135 5.68584 5.84083 5.85454 5.91550 6.09405 6.15904 6.20698 6.24297 6.27054 6.35546 6.58181 6.64727 6.73302 6.81597 6.96956 6.98742 7.12330 7.23473 7.43041 7.58843 7.67404 7.80329 7.82899 7.85173 8.31519 8.53685 8.60609 9.51302 9.93983 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.016506 B = 0.005891 C = 0.004704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1695.918385 B = 4751.693051 C = 5950.603712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.171 3.829 3 C -0.172 4.172 4 O -0.559 6.559 5 C -0.122 4.122 6 C -0.134 4.134 7 C -0.128 4.128 8 C -0.094 4.094 9 C 0.028 3.972 10 C 0.011 3.989 11 N -0.452 5.452 12 C -0.031 4.031 13 C -0.150 4.150 14 C -0.128 4.128 15 C 0.085 3.915 16 C -0.439 4.439 17 H 0.089 0.911 18 C 0.073 3.927 19 N -0.789 5.789 20 Si 0.910 3.090 21 H -0.266 1.266 22 H -0.274 1.274 23 H -0.258 1.258 24 C -0.101 4.101 25 H 0.071 0.929 26 H 0.059 0.941 27 H 0.064 0.936 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.066 0.934 31 H 0.377 0.623 32 H 0.113 0.887 33 H 0.114 0.886 34 H 0.133 0.867 35 H 0.121 0.879 36 H 0.099 0.901 37 H 0.128 0.872 38 H 0.285 0.715 39 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.105 6.247 -3.199 9.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.131 3.869 3 C -0.230 4.230 4 O -0.366 6.366 5 C -0.123 4.123 6 C -0.152 4.152 7 C -0.146 4.146 8 C -0.113 4.113 9 C 0.028 3.972 10 C -0.127 4.127 11 N -0.159 5.159 12 C -0.192 4.192 13 C -0.170 4.170 14 C -0.154 4.154 15 C 0.081 3.919 16 C -0.469 4.469 17 H 0.107 0.893 18 C -0.146 4.146 19 N -0.413 5.413 20 Si 0.734 3.266 21 H -0.191 1.191 22 H -0.199 1.199 23 H -0.182 1.182 24 C -0.120 4.120 25 H 0.090 0.910 26 H 0.078 0.922 27 H 0.083 0.917 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.085 0.915 31 H 0.226 0.774 32 H 0.131 0.869 33 H 0.132 0.868 34 H 0.151 0.849 35 H 0.139 0.861 36 H 0.117 0.883 37 H 0.145 0.855 38 H 0.096 0.904 39 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -7.200 5.964 -3.797 10.091 hybrid contribution 1.445 0.422 1.645 2.230 sum -5.755 6.385 -2.152 8.861 Atomic orbital electron populations 1.21788 0.92630 1.02895 1.01905 1.19919 0.94357 0.89951 0.82701 1.22471 1.01904 0.96250 1.02327 1.86511 1.27091 1.79703 1.43271 1.20176 0.95898 1.00665 0.95521 1.20847 0.99549 1.01930 0.92897 1.20962 0.96716 0.99203 0.97761 1.21499 0.93065 0.98176 0.98540 1.18394 0.92121 0.94251 0.92472 1.19527 0.94330 1.04017 0.94849 1.67042 1.18608 1.05470 1.24829 1.21680 0.92487 1.05444 0.99627 1.21450 0.99344 1.00395 0.95838 1.21438 0.97226 0.99508 0.97212 1.18345 0.90472 0.91052 0.92052 1.19607 1.24894 1.10634 0.91723 0.89349 1.26003 0.92712 0.95291 1.00568 1.69743 1.26781 1.19863 1.24923 0.86249 0.78977 0.81518 0.79865 1.19073 1.19916 1.18195 1.20886 0.95316 0.97804 0.98022 0.91002 0.92167 0.91713 0.92123 0.91998 0.91507 0.77414 0.86879 0.86762 0.84867 0.86122 0.88288 0.85466 0.90399 0.86819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 8.15 37.16 0.30 -1.34 16 2 C 0.17 2.41 1.26 -91.77 -0.12 2.30 16 3 C -0.17 -2.10 8.80 37.16 0.33 -1.77 16 4 O -0.56 -8.43 12.71 -35.23 -0.45 -8.88 16 5 C -0.12 -2.05 4.84 -104.68 -0.51 -2.55 16 6 C -0.13 -2.14 9.14 -39.46 -0.36 -2.50 16 7 C -0.13 -2.21 10.03 -39.64 -0.40 -2.61 16 8 C -0.09 -1.93 7.85 -39.16 -0.31 -2.24 16 9 C 0.03 0.63 5.25 -104.90 -0.55 0.08 16 10 C 0.01 0.26 6.43 -82.24 -0.53 -0.27 16 11 N -0.45 -11.02 10.15 -9.17 -0.09 -11.11 16 12 C -0.03 -0.71 11.16 -17.36 -0.19 -0.91 16 13 C -0.15 -3.38 10.03 -39.84 -0.40 -3.78 16 14 C -0.13 -3.16 8.72 -38.97 -0.34 -3.50 16 15 C 0.09 2.17 5.55 -106.41 -0.59 1.58 16 16 C -0.44 -10.74 6.73 -37.89 -0.26 -10.99 16 17 H 0.09 2.12 6.48 -52.49 -0.34 1.78 16 18 C 0.07 1.70 5.26 -17.32 -0.09 1.61 16 19 N -0.79 -18.89 10.90 55.55 0.61 -18.29 16 20 Si 0.91 17.47 29.58 -169.99 -5.03 12.45 16 21 H -0.27 -5.03 7.11 56.52 0.40 -4.63 16 22 H -0.27 -5.16 7.11 56.52 0.40 -4.76 16 23 H -0.26 -4.97 7.11 56.52 0.40 -4.57 16 24 C -0.10 -1.97 8.93 -39.16 -0.35 -2.32 16 25 H 0.07 0.75 6.50 -51.93 -0.34 0.41 16 26 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 31 H 0.38 4.97 7.32 45.56 0.33 5.30 16 32 H 0.11 1.47 6.15 -52.49 -0.32 1.15 16 33 H 0.11 1.67 8.06 -52.49 -0.42 1.24 16 34 H 0.13 2.90 6.76 -52.49 -0.35 2.54 16 35 H 0.12 2.38 8.06 -52.49 -0.42 1.96 16 36 H 0.10 1.93 8.06 -52.49 -0.42 1.50 16 37 H 0.13 3.18 6.32 -52.48 -0.33 2.85 16 38 H 0.28 6.21 8.30 -40.82 -0.34 5.87 16 39 H 0.11 2.15 6.48 -52.48 -0.34 1.81 16 LS Contribution 321.97 15.07 4.85 4.85 Total: -1.00 -27.50 321.97 -8.68 -36.18 By element: Atomic # 1 Polarization: 18.24 SS G_CDS: -4.21 Total: 14.03 kcal Atomic # 6 Polarization: -24.87 SS G_CDS: -4.36 Total: -29.22 kcal Atomic # 7 Polarization: -29.91 SS G_CDS: 0.51 Total: -29.40 kcal Atomic # 8 Polarization: -8.43 SS G_CDS: -0.45 Total: -8.88 kcal Atomic # 14 Polarization: 17.47 SS G_CDS: -5.03 Total: 12.45 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -27.50 -8.68 -36.18 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240404636.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.977 kcal (2) G-P(sol) polarization free energy of solvation -27.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds