Wall clock time and date at job start Tue Mar 31 2020 06:06:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47529 * 2 1 4 4 O 1.42909 * 109.46892 * 240.00043 * 2 1 3 5 5 C 1.50699 * 109.47357 * 120.00362 * 2 1 3 6 6 C 1.38347 * 119.93830 * 329.97571 * 5 2 1 7 7 C 1.38306 * 120.24688 * 180.02562 * 6 5 2 8 8 C 1.38038 * 120.11861 * 359.74354 * 7 6 5 9 9 C 1.39318 * 119.87565 * 0.50612 * 8 7 6 10 10 C 1.48392 * 120.11792 * 179.76983 * 9 8 7 11 11 C 1.40045 * 120.82033 * 179.72956 * 10 9 8 12 12 C 1.38507 * 119.42195 * 180.02562 * 11 10 9 13 13 N 1.31478 * 121.14596 * 359.97438 * 12 11 10 14 14 C 1.33647 * 121.79298 * 0.02562 * 13 12 11 15 15 C 1.41426 * 119.77696 * 179.97438 * 14 13 12 16 16 H 1.07997 * 119.99912 * 187.07025 * 15 14 13 17 17 C 1.40033 * 119.99947 * 7.07167 * 15 14 13 18 18 N 1.30741 * 120.00144 * 182.56910 * 17 15 14 19 19 Si 1.86809 * 120.00169 * 2.56807 * 17 15 14 20 20 H 1.48499 * 109.47093 * 179.97438 * 19 17 15 21 21 H 1.48495 * 109.46992 * 300.00230 * 19 17 15 22 22 H 1.48506 * 109.46797 * 59.99784 * 19 17 15 23 23 C 1.39300 * 120.82386 * 0.02562 * 10 9 8 24 24 C 1.37991 * 119.94160 * 149.99780 * 5 2 1 25 25 H 1.09009 * 109.46760 * 300.00174 * 1 2 3 26 26 H 1.08999 * 109.47193 * 59.99391 * 1 2 3 27 27 H 1.08997 * 109.47644 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47471 * 180.02562 * 3 2 1 29 29 H 1.08999 * 109.47380 * 300.00495 * 3 2 1 30 30 H 1.09004 * 109.46830 * 59.99942 * 3 2 1 31 31 H 0.96699 * 113.99737 * 300.00052 * 4 2 1 32 32 H 1.08000 * 119.87311 * 0.04341 * 6 5 2 33 33 H 1.07993 * 119.93586 * 179.97438 * 7 6 5 34 34 H 1.08004 * 120.05961 * 180.28064 * 8 7 6 35 35 H 1.08002 * 120.28579 * 359.97438 * 11 10 9 36 36 H 1.07996 * 119.42535 * 179.97438 * 12 11 10 37 37 H 0.96999 * 119.99741 * 354.84870 * 18 17 15 38 38 H 1.08005 * 120.58218 * 359.97438 * 23 10 9 39 39 H 1.08002 * 120.06352 * 359.95669 * 24 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 8 2.0063 -0.6737 -1.1669 5 6 2.0324 -0.7105 1.2304 6 6 1.2839 -0.6895 2.3937 7 6 1.7391 -1.3390 3.5268 8 6 2.9415 -2.0165 3.5009 9 6 3.7018 -2.0365 2.3336 10 6 4.9976 -2.7589 2.3012 11 6 5.7710 -2.7932 1.1342 12 6 6.9757 -3.4766 1.1362 13 7 7.4060 -4.0932 2.2148 14 6 6.7064 -4.0909 3.3535 15 6 7.2094 -4.7687 4.4882 16 1 6.5985 -4.8670 5.3733 17 6 8.4997 -5.3123 4.4642 18 7 8.9462 -5.9823 5.4943 19 14 9.5831 -5.0804 2.9601 20 1 10.8912 -5.7464 3.1849 21 1 8.9192 -5.6795 1.7747 22 1 9.8003 -3.6302 2.7255 23 6 5.4719 -3.4248 3.4290 24 6 3.2382 -1.3803 1.1948 25 1 -0.3633 0.5139 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 3.1301 1.4424 -0.0005 29 1 1.6767 1.9564 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.7209 -1.5952 -1.2330 32 1 0.3405 -0.1643 2.4171 33 1 1.1510 -1.3190 4.4323 34 1 3.2939 -2.5271 4.3849 35 1 5.4306 -2.2918 0.2402 36 1 7.5720 -3.5034 0.2362 37 1 8.4139 -6.0395 6.3032 38 1 4.9026 -3.4253 4.3469 39 1 3.8216 -1.3964 0.2860 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240409356.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:30 Heat of formation + Delta-G solvation = -20.308180 kcal Electronic energy + Delta-G solvation = -21232.025490 eV Core-core repulsion = 18103.067909 eV Total energy + Delta-G solvation = -3128.957581 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.99881 -38.63783 -37.16676 -34.00218 -33.24327 -32.09844 -30.69092 -30.03431 -28.77017 -27.50378 -25.62734 -23.73369 -22.70805 -21.82699 -20.54671 -19.83719 -18.33521 -17.35284 -16.51442 -15.62489 -15.29084 -15.07660 -14.91709 -14.38860 -14.03007 -13.92315 -13.55100 -13.16612 -12.80405 -12.61311 -12.55107 -12.40440 -12.36941 -12.28917 -12.10905 -11.84989 -11.66124 -11.14493 -10.92745 -10.70529 -10.47535 -10.09937 -10.07267 -9.63092 -9.54243 -9.31645 -8.69737 -8.03725 -7.78922 -7.72922 -7.27414 -4.84018 1.14711 1.49396 2.50375 2.69008 3.61483 3.65034 3.99607 4.03116 4.05511 4.44020 4.48608 4.64302 4.70254 4.88630 5.03645 5.05978 5.27500 5.35073 5.48168 5.48621 5.53973 5.58878 5.65867 5.70541 5.73198 5.85418 5.99046 6.04603 6.05126 6.29164 6.38265 6.41258 6.56160 6.60557 6.75778 6.92454 7.06553 7.21037 7.36403 7.42547 7.51489 7.61819 8.01748 8.22895 8.57850 9.42234 9.96597 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.031233 B = 0.003953 C = 0.003599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.273727 B = 7082.293093 C = 7778.488208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.171 3.829 3 C -0.134 4.134 4 O -0.555 6.555 5 C -0.124 4.124 6 C -0.123 4.123 7 C -0.122 4.122 8 C -0.109 4.109 9 C -0.025 4.025 10 C 0.012 3.988 11 C -0.303 4.303 12 C 0.152 3.848 13 N -0.574 5.574 14 C 0.249 3.751 15 C -0.473 4.473 16 H 0.081 0.919 17 C 0.043 3.957 18 N -0.803 5.803 19 Si 1.155 2.845 20 H -0.333 1.333 21 H -0.279 1.279 22 H -0.293 1.293 23 C -0.241 4.241 24 C -0.092 4.092 25 H 0.068 0.932 26 H 0.064 0.936 27 H 0.060 0.940 28 H 0.065 0.935 29 H 0.063 0.937 30 H 0.070 0.930 31 H 0.378 0.622 32 H 0.120 0.880 33 H 0.120 0.880 34 H 0.126 0.874 35 H 0.108 0.892 36 H 0.130 0.870 37 H 0.283 0.717 38 H 0.108 0.892 39 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.046 10.508 -7.518 19.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.130 3.870 3 C -0.192 4.192 4 O -0.362 6.362 5 C -0.124 4.124 6 C -0.141 4.141 7 C -0.140 4.140 8 C -0.127 4.127 9 C -0.025 4.025 10 C 0.007 3.993 11 C -0.326 4.326 12 C -0.008 4.008 13 N -0.293 5.293 14 C 0.127 3.873 15 C -0.504 4.504 16 H 0.099 0.901 17 C -0.178 4.178 18 N -0.424 5.424 19 Si 0.990 3.010 20 H -0.266 1.266 21 H -0.206 1.206 22 H -0.221 1.221 23 C -0.264 4.264 24 C -0.111 4.111 25 H 0.087 0.913 26 H 0.083 0.917 27 H 0.079 0.921 28 H 0.084 0.916 29 H 0.082 0.918 30 H 0.088 0.912 31 H 0.226 0.774 32 H 0.138 0.862 33 H 0.138 0.862 34 H 0.144 0.856 35 H 0.126 0.874 36 H 0.147 0.853 37 H 0.094 0.906 38 H 0.126 0.874 39 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -12.602 10.197 -8.098 18.121 hybrid contribution -2.804 0.274 1.173 3.052 sum -15.406 10.471 -6.925 19.874 Atomic orbital electron populations 1.22536 0.95420 1.02683 1.02709 1.19943 0.92245 0.92397 0.82375 1.21743 1.02431 0.92806 1.02177 1.86537 1.77356 1.29152 1.43111 1.20367 0.95891 1.00221 0.95953 1.21012 0.99659 1.00660 0.92769 1.21026 0.96446 0.98395 0.98138 1.21386 0.94387 0.98821 0.98087 1.19033 0.93917 0.96320 0.93256 1.18692 0.91528 0.94850 0.94270 1.21205 0.99784 1.13301 0.98273 1.22052 0.92716 0.90674 0.95402 1.66513 1.35819 1.26240 1.00715 1.18592 0.88691 0.89410 0.90635 1.20797 1.01146 1.29612 0.98854 0.90078 1.27857 0.97524 0.88681 1.03749 1.70657 1.40681 1.27300 1.03797 0.81803 0.70317 0.76657 0.72187 1.26632 1.20632 1.22135 1.21742 0.99990 1.06838 0.97790 1.21118 0.95075 0.96422 0.98436 0.91268 0.91663 0.92082 0.91583 0.91775 0.91151 0.77442 0.86249 0.86190 0.85619 0.87425 0.85272 0.90604 0.87431 0.85014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.46 8.12 37.16 0.30 -1.16 16 2 C 0.17 1.82 1.23 -91.78 -0.11 1.70 16 3 C -0.13 -1.36 8.83 37.16 0.33 -1.03 16 4 O -0.56 -6.30 11.96 -35.23 -0.42 -6.72 16 5 C -0.12 -1.58 4.80 -104.67 -0.50 -2.08 16 6 C -0.12 -1.46 9.14 -39.52 -0.36 -1.83 16 7 C -0.12 -1.59 10.03 -39.63 -0.40 -1.98 16 8 C -0.11 -1.73 9.45 -39.25 -0.37 -2.10 16 9 C -0.03 -0.45 5.88 -104.89 -0.62 -1.06 16 10 C 0.01 0.26 5.91 -104.64 -0.62 -0.36 16 11 C -0.30 -6.20 9.52 -38.81 -0.37 -6.56 16 12 C 0.15 3.34 11.17 -17.60 -0.20 3.15 16 13 N -0.57 -14.59 4.54 -11.21 -0.05 -14.64 16 14 C 0.25 6.50 6.39 -85.02 -0.54 5.96 16 15 C -0.47 -12.87 9.58 -37.70 -0.36 -13.23 16 16 H 0.08 2.19 8.05 -52.49 -0.42 1.77 16 17 C 0.04 1.18 5.52 -17.34 -0.10 1.08 16 18 N -0.80 -21.92 13.65 55.55 0.76 -21.16 16 19 Si 1.16 28.57 25.56 -169.99 -4.34 24.22 16 20 H -0.33 -8.12 7.11 56.52 0.40 -7.71 16 21 H -0.28 -6.84 6.67 56.52 0.38 -6.47 16 22 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 23 C -0.24 -5.62 9.22 -38.34 -0.35 -5.97 16 24 C -0.09 -1.42 8.75 -39.25 -0.34 -1.76 16 25 H 0.07 0.50 6.50 -51.92 -0.34 0.17 16 26 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.38 3.30 9.04 45.56 0.41 3.71 16 32 H 0.12 1.11 6.15 -52.49 -0.32 0.78 16 33 H 0.12 1.26 8.06 -52.49 -0.42 0.83 16 34 H 0.13 1.99 6.29 -52.48 -0.33 1.65 16 35 H 0.11 1.91 6.32 -52.49 -0.33 1.58 16 36 H 0.13 2.40 8.06 -52.49 -0.42 1.98 16 37 H 0.28 7.36 8.72 -40.82 -0.36 7.00 16 38 H 0.11 2.33 6.33 -52.48 -0.33 2.00 16 39 H 0.13 2.02 5.71 -52.49 -0.30 1.72 16 LS Contribution 320.05 15.07 4.82 4.82 Total: -1.00 -29.80 320.05 -7.95 -37.75 By element: Atomic # 1 Polarization: 7.07 SS G_CDS: -4.10 Total: 2.97 kcal Atomic # 6 Polarization: -22.62 SS G_CDS: -4.61 Total: -27.24 kcal Atomic # 7 Polarization: -36.52 SS G_CDS: 0.71 Total: -35.81 kcal Atomic # 8 Polarization: -6.30 SS G_CDS: -0.42 Total: -6.72 kcal Atomic # 14 Polarization: 28.57 SS G_CDS: -4.34 Total: 24.22 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -29.80 -7.95 -37.75 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240409356.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.442 kcal (2) G-P(sol) polarization free energy of solvation -29.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds