Wall clock time and date at job start Tue Mar 31 2020 06:07:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.46929 * 2 1 4 4 O 1.42896 * 109.47191 * 240.00202 * 2 1 3 5 5 C 1.50700 * 109.46836 * 120.00053 * 2 1 3 6 6 C 1.38425 * 119.92409 * 329.99888 * 5 2 1 7 7 C 1.38379 * 120.30349 * 180.02562 * 6 5 2 8 8 C 1.37944 * 120.15202 * 359.97438 * 7 6 5 9 9 C 1.39649 * 119.84574 * 0.02562 * 8 7 6 10 10 C 1.47846 * 120.15280 * 179.97438 * 9 8 7 11 11 C 1.39307 * 120.78415 * 129.99839 * 10 9 8 12 12 N 1.31674 * 120.66169 * 179.72383 * 11 10 9 13 13 C 1.32211 * 122.50411 * 0.27793 * 12 11 10 14 14 C 1.36489 * 121.50395 * 0.02562 * 13 12 11 15 15 C 1.41109 * 119.10878 * 359.97438 * 14 13 12 16 16 C 1.40941 * 121.10972 * 180.02562 * 15 14 13 17 17 H 1.08001 * 119.99983 * 154.55700 * 16 15 14 18 18 C 1.40183 * 119.99576 * 334.55974 * 16 15 14 19 19 N 1.30679 * 119.99784 * 344.38151 * 18 16 15 20 20 Si 1.86800 * 119.99467 * 164.38372 * 18 16 15 21 21 H 1.48501 * 109.47151 * 90.00026 * 20 18 16 22 22 H 1.48501 * 109.46644 * 209.99461 * 20 18 16 23 23 H 1.48499 * 109.47486 * 329.99446 * 20 18 16 24 24 C 1.37902 * 119.92205 * 150.24174 * 5 2 1 25 25 H 1.08998 * 109.47228 * 299.99894 * 1 2 3 26 26 H 1.09001 * 109.47076 * 60.00530 * 1 2 3 27 27 H 1.09004 * 109.46874 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.47240 * 180.02562 * 3 2 1 29 29 H 1.09003 * 109.47135 * 300.00054 * 3 2 1 30 30 H 1.08996 * 109.46904 * 59.99507 * 3 2 1 31 31 H 0.96696 * 114.00114 * 180.02562 * 4 2 1 32 32 H 1.07995 * 119.84710 * 0.02562 * 6 5 2 33 33 H 1.07997 * 119.92812 * 179.97438 * 7 6 5 34 34 H 1.08002 * 120.07983 * 179.97438 * 8 7 6 35 35 H 1.07994 * 119.66582 * 0.02562 * 11 10 9 36 36 H 1.08004 * 119.24609 * 180.02562 * 13 12 11 37 37 H 1.07999 * 120.44455 * 180.02562 * 14 13 12 38 38 H 0.97000 * 119.99436 * 180.02562 * 19 18 16 39 39 H 1.07995 * 120.07498 * 0.02562 * 24 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6736 -1.1668 5 6 2.0323 -0.7104 1.2305 6 6 1.2829 -0.6896 2.3941 7 6 1.7368 -1.3388 3.5287 8 6 2.9406 -2.0122 3.5068 9 6 3.7017 -2.0373 2.3363 10 6 4.9931 -2.7565 2.3054 11 6 5.2785 -3.6661 1.2897 12 7 6.4316 -4.3013 1.2615 13 6 7.3649 -4.1205 2.1803 14 6 7.1833 -3.2563 3.2211 15 6 5.9708 -2.5406 3.3154 16 6 5.7388 -1.6371 4.3720 17 1 5.0446 -0.8202 4.2414 18 6 6.4094 -1.7989 5.5924 19 7 7.0032 -2.9302 5.8667 20 14 6.4539 -0.3972 6.8264 21 1 5.2864 -0.5031 7.7381 22 1 7.7082 -0.4741 7.6176 23 1 6.4024 0.8996 6.1048 24 6 3.2398 -1.3756 1.1960 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1299 1.4426 -0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6766 1.9563 0.8899 31 1 2.9703 -0.7121 -1.2327 32 1 0.3396 -0.1642 2.4166 33 1 1.1474 -1.3183 4.4334 34 1 3.2939 -2.5182 4.3932 35 1 4.5486 -3.8485 0.5149 36 1 8.2922 -4.6691 2.1057 37 1 7.9574 -3.1214 3.9619 38 1 7.4668 -3.0422 6.7113 39 1 3.8255 -1.3873 0.2888 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240409392.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:17 Heat of formation + Delta-G solvation = -14.873597 kcal Electronic energy + Delta-G solvation = -21763.377681 eV Core-core repulsion = 18634.655761 eV Total energy + Delta-G solvation = -3128.721920 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.61375 -38.35516 -36.72494 -34.28838 -32.94222 -31.52515 -30.45362 -29.56119 -28.13892 -27.24565 -26.05998 -22.94083 -22.59202 -21.40416 -20.74328 -19.42587 -17.76974 -17.22362 -15.69419 -15.57470 -15.06267 -14.93418 -14.56306 -14.40939 -14.03208 -13.63124 -13.28877 -12.96793 -12.78138 -12.55088 -12.31691 -12.18064 -12.02892 -11.76374 -11.71791 -11.54488 -11.36447 -11.16777 -11.09046 -10.67412 -10.64194 -10.39289 -9.99997 -9.70457 -9.55802 -8.59241 -8.22525 -8.05561 -7.92347 -7.38665 -6.96743 -4.70207 1.78991 1.95820 2.67082 2.80138 2.93905 2.98261 3.15897 3.74319 4.23620 4.48861 4.52759 4.81927 4.99448 5.10162 5.44560 5.45903 5.57662 5.62508 5.71234 5.78420 5.80096 5.85748 5.87928 6.03723 6.14380 6.20250 6.24125 6.28599 6.57241 6.64773 6.76709 6.80563 6.99954 7.00564 7.07891 7.27440 7.31603 7.46373 7.59656 7.74514 7.78339 7.99034 8.33042 8.58437 8.62499 9.54157 9.90207 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.016154 B = 0.005844 C = 0.004726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1732.912905 B = 4790.239355 C = 5923.304320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.171 3.829 3 C -0.172 4.172 4 O -0.559 6.559 5 C -0.116 4.116 6 C -0.139 4.139 7 C -0.124 4.124 8 C -0.099 4.099 9 C 0.029 3.971 10 C -0.238 4.238 11 C 0.130 3.870 12 N -0.578 5.578 13 C 0.082 3.918 14 C -0.208 4.208 15 C 0.146 3.854 16 C -0.441 4.441 17 H 0.087 0.913 18 C 0.078 3.922 19 N -0.778 5.778 20 Si 0.909 3.091 21 H -0.266 1.266 22 H -0.273 1.273 23 H -0.258 1.258 24 C -0.122 4.122 25 H 0.071 0.929 26 H 0.060 0.940 27 H 0.064 0.936 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.066 0.934 31 H 0.377 0.623 32 H 0.113 0.887 33 H 0.113 0.887 34 H 0.128 0.872 35 H 0.122 0.878 36 H 0.118 0.882 37 H 0.125 0.875 38 H 0.286 0.714 39 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.707 6.742 -3.263 10.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.130 3.870 3 C -0.230 4.230 4 O -0.366 6.366 5 C -0.116 4.116 6 C -0.157 4.157 7 C -0.142 4.142 8 C -0.117 4.117 9 C 0.028 3.972 10 C -0.243 4.243 11 C -0.028 4.028 12 N -0.292 5.292 13 C -0.066 4.066 14 C -0.231 4.231 15 C 0.138 3.862 16 C -0.471 4.471 17 H 0.105 0.895 18 C -0.143 4.143 19 N -0.402 5.402 20 Si 0.732 3.268 21 H -0.191 1.191 22 H -0.198 1.198 23 H -0.182 1.182 24 C -0.140 4.140 25 H 0.090 0.910 26 H 0.079 0.921 27 H 0.083 0.917 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.085 0.915 31 H 0.225 0.775 32 H 0.131 0.869 33 H 0.131 0.869 34 H 0.145 0.855 35 H 0.139 0.861 36 H 0.136 0.864 37 H 0.143 0.857 38 H 0.097 0.903 39 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -7.976 5.936 -3.856 10.664 hybrid contribution 0.627 1.186 1.659 2.134 sum -7.349 7.122 -2.197 10.467 Atomic orbital electron populations 1.21790 0.92580 1.02899 1.01969 1.19936 0.94392 0.90015 0.82643 1.22470 1.01946 0.96194 1.02375 1.86517 1.27016 1.79701 1.43348 1.20167 0.95719 1.00274 0.95461 1.20829 0.99730 1.02198 0.92922 1.20998 0.96709 0.98807 0.97683 1.21455 0.93271 0.98519 0.98476 1.18643 0.92718 0.93672 0.92154 1.19545 0.94784 1.06788 1.03184 1.22098 0.93317 0.92393 0.95033 1.67325 1.03158 1.29548 1.29187 1.21734 0.96684 0.96620 0.91540 1.21904 0.98894 1.02120 1.00137 1.17732 0.89286 0.89322 0.89866 1.19613 1.21250 1.10614 0.95579 0.89529 1.26032 0.92731 0.96063 0.99497 1.69738 1.23972 1.23156 1.23326 0.86280 0.78828 0.81848 0.79820 1.19106 1.19824 1.18183 1.20928 0.95648 0.99159 0.98263 0.90981 0.92129 0.91713 0.92067 0.91964 0.91499 0.77482 0.86902 0.86876 0.85455 0.86098 0.86416 0.85681 0.90316 0.87039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 8.15 37.16 0.30 -1.26 16 2 C 0.17 2.27 1.26 -91.77 -0.12 2.16 16 3 C -0.17 -2.02 8.80 37.16 0.33 -1.69 16 4 O -0.56 -7.83 12.71 -35.23 -0.45 -8.28 16 5 C -0.12 -1.83 4.84 -104.68 -0.51 -2.33 16 6 C -0.14 -2.12 9.14 -39.46 -0.36 -2.48 16 7 C -0.12 -2.06 10.03 -39.64 -0.40 -2.46 16 8 C -0.10 -1.95 8.06 -39.16 -0.32 -2.27 16 9 C 0.03 0.60 5.00 -104.90 -0.52 0.07 16 10 C -0.24 -5.53 5.54 -104.04 -0.58 -6.11 16 11 C 0.13 2.97 10.72 -17.22 -0.18 2.79 16 12 N -0.58 -13.86 10.32 -13.36 -0.14 -14.00 16 13 C 0.08 1.93 11.09 -18.02 -0.20 1.73 16 14 C -0.21 -5.18 8.72 -39.12 -0.34 -5.52 16 15 C 0.15 3.66 5.59 -106.26 -0.59 3.06 16 16 C -0.44 -10.74 7.29 -37.83 -0.28 -11.01 16 17 H 0.09 2.09 6.68 -52.49 -0.35 1.73 16 18 C 0.08 1.80 5.21 -17.31 -0.09 1.71 16 19 N -0.78 -18.58 10.95 55.56 0.61 -17.97 16 20 Si 0.91 17.45 29.59 -169.99 -5.03 12.42 16 21 H -0.27 -5.04 7.11 56.52 0.40 -4.64 16 22 H -0.27 -5.13 7.11 56.52 0.40 -4.73 16 23 H -0.26 -4.99 7.11 56.52 0.40 -4.59 16 24 C -0.12 -2.18 8.82 -39.16 -0.35 -2.53 16 25 H 0.07 0.72 6.50 -51.93 -0.34 0.38 16 26 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.38 4.46 7.32 45.56 0.33 4.79 16 32 H 0.11 1.42 6.15 -52.49 -0.32 1.09 16 33 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 34 H 0.13 2.69 7.34 -52.49 -0.39 2.30 16 35 H 0.12 2.48 8.05 -52.49 -0.42 2.06 16 36 H 0.12 2.46 8.06 -52.48 -0.42 2.03 16 37 H 0.13 3.14 6.27 -52.49 -0.33 2.81 16 38 H 0.29 6.19 8.29 -40.82 -0.34 5.85 16 39 H 0.11 1.85 6.48 -52.49 -0.34 1.51 16 LS Contribution 323.04 15.07 4.87 4.87 Total: -1.00 -27.31 323.04 -8.58 -35.89 By element: Atomic # 1 Polarization: 17.47 SS G_CDS: -4.25 Total: 13.23 kcal Atomic # 6 Polarization: -21.95 SS G_CDS: -4.20 Total: -26.15 kcal Atomic # 7 Polarization: -32.45 SS G_CDS: 0.47 Total: -31.98 kcal Atomic # 8 Polarization: -7.83 SS G_CDS: -0.45 Total: -8.28 kcal Atomic # 14 Polarization: 17.45 SS G_CDS: -5.03 Total: 12.42 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -27.31 -8.58 -35.89 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240409392.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.019 kcal (2) G-P(sol) polarization free energy of solvation -27.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds