Wall clock time and date at job start Tue Mar 31 2020 06:08:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47311 * 2 1 4 4 O 1.42902 * 109.47520 * 239.99719 * 2 1 3 5 5 C 1.50709 * 109.46778 * 120.00231 * 2 1 3 6 6 C 1.38376 * 120.34466 * 329.99482 * 5 2 1 7 7 N 1.31929 * 121.07962 * 180.02562 * 6 5 2 8 8 C 1.31689 * 121.87823 * 359.97438 * 7 6 5 9 9 C 1.39569 * 120.55958 * 0.02562 * 8 7 6 10 10 C 1.47997 * 120.55853 * 179.97438 * 9 8 7 11 11 C 1.39936 * 119.88091 * 359.97438 * 10 9 8 12 12 C 1.36258 * 120.11948 * 180.02562 * 11 10 9 13 13 C 1.40931 * 119.87750 * 0.02562 * 12 11 10 14 14 C 1.41032 * 120.11496 * 180.02562 * 13 12 11 15 15 H 1.08005 * 119.99330 * 204.70846 * 14 13 12 16 16 C 1.40007 * 120.00098 * 24.97767 * 14 13 12 17 17 N 1.30795 * 120.00418 * 17.52477 * 16 14 13 18 18 Si 1.86803 * 119.99935 * 197.52992 * 16 14 13 19 19 H 1.48496 * 109.47519 * 90.00118 * 18 16 14 20 20 H 1.48501 * 109.46883 * 210.00182 * 18 16 14 21 21 H 1.48501 * 109.46792 * 329.99922 * 18 16 14 22 22 C 1.40924 * 119.76369 * 0.27471 * 13 12 11 23 23 C 1.36259 * 119.87658 * 359.42001 * 22 13 12 24 24 C 1.38331 * 120.34346 * 150.28203 * 5 2 1 25 25 H 1.08997 * 109.47432 * 300.00047 * 1 2 3 26 26 H 1.09004 * 109.46695 * 60.00572 * 1 2 3 27 27 H 1.09000 * 109.46975 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47158 * 179.97438 * 3 2 1 29 29 H 1.08995 * 109.46791 * 299.99462 * 3 2 1 30 30 H 1.09002 * 109.46658 * 60.00048 * 3 2 1 31 31 H 0.96702 * 113.99876 * 300.00171 * 4 2 1 32 32 H 1.07997 * 119.45722 * 359.97438 * 6 5 2 33 33 H 1.08001 * 119.71882 * 179.97438 * 8 7 6 34 34 H 1.07995 * 119.93629 * 0.02562 * 11 10 9 35 35 H 1.08000 * 120.05843 * 180.02562 * 12 11 10 36 36 H 0.97001 * 120.00366 * 179.97438 * 17 16 14 37 37 H 1.08001 * 120.05941 * 179.72353 * 22 13 12 38 38 H 1.08009 * 119.93749 * 180.29815 * 23 22 13 39 39 H 1.08003 * 120.85703 * 359.97438 * 24 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6737 -1.1667 5 6 2.0323 -0.7105 1.2305 6 6 1.2902 -0.6953 2.3984 7 7 1.7163 -1.3119 3.4841 8 6 2.8585 -1.9668 3.5090 9 6 3.6655 -2.0294 2.3720 10 6 4.9494 -2.7650 2.4002 11 6 5.3613 -3.4038 3.5751 12 6 6.5428 -4.0819 3.6066 13 6 7.3506 -4.1387 2.4533 14 6 8.5741 -4.8396 2.4801 15 1 9.3622 -4.5767 1.7900 16 6 8.7650 -5.8798 3.3976 17 7 7.7345 -6.4321 3.9839 18 14 10.4915 -6.4789 3.7844 19 1 11.0401 -5.7043 4.9264 20 1 10.4474 -7.9201 4.1396 21 1 11.3596 -6.2886 2.5947 22 6 6.9340 -3.4882 1.2746 23 6 5.7477 -2.8182 1.2522 24 6 3.2427 -1.3797 1.2060 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 0.0005 28 1 3.1300 1.4424 0.0005 29 1 1.6768 1.9562 -0.8900 30 1 1.6767 1.9562 0.8900 31 1 1.7211 -1.5953 -1.2328 32 1 0.3473 -0.1693 2.4217 33 1 3.1739 -2.4588 4.4172 34 1 4.7416 -3.3592 4.4585 35 1 6.8595 -4.5749 4.5139 36 1 7.8667 -7.1531 4.6192 37 1 7.5514 -3.5249 0.3893 38 1 5.4252 -2.3233 0.3479 39 1 3.8440 -1.4041 0.3092 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240666539.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:33 Heat of formation + Delta-G solvation = -12.985166 kcal Electronic energy + Delta-G solvation = -21075.442516 eV Core-core repulsion = 17946.802485 eV Total energy + Delta-G solvation = -3128.640031 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.15247 -37.99901 -37.26858 -34.22530 -32.93082 -32.16990 -30.48166 -29.45411 -28.78855 -27.50561 -25.46050 -23.54322 -22.98702 -21.06447 -20.56738 -19.66753 -17.68853 -17.22071 -16.58257 -15.83902 -15.41621 -15.05421 -14.82274 -14.52491 -13.89951 -13.43313 -13.23760 -12.96296 -12.81224 -12.61944 -12.46852 -12.27713 -12.09664 -11.96356 -11.79769 -11.58671 -11.47576 -11.28557 -11.12572 -10.93606 -10.69316 -10.17530 -9.85406 -9.61384 -9.59819 -9.19146 -8.89909 -8.71164 -7.73264 -7.21305 -7.00508 -4.53688 1.32773 1.67237 2.69974 2.94154 2.97518 2.99337 3.12116 3.73825 4.13144 4.18485 4.56802 4.60202 4.79024 4.92151 5.03710 5.35757 5.45832 5.50296 5.53633 5.55368 5.63958 5.73448 5.77724 5.92579 5.96145 6.03492 6.13590 6.27104 6.29813 6.57425 6.64727 6.76934 6.84260 7.05603 7.16518 7.20313 7.41546 7.59883 7.71599 7.83927 7.93759 8.05240 8.39454 8.44016 8.61933 8.74191 9.88860 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.034853 B = 0.003474 C = 0.003255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.192817 B = 8058.099926 C = 8599.055764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.176 3.824 3 C -0.134 4.134 4 O -0.556 6.556 5 C -0.161 4.161 6 C 0.053 3.947 7 N -0.476 5.476 8 C 0.066 3.934 9 C -0.019 4.019 10 C -0.209 4.209 11 C -0.072 4.072 12 C -0.172 4.172 13 C 0.120 3.880 14 C -0.442 4.442 15 H 0.084 0.916 16 C 0.073 3.927 17 N -0.774 5.774 18 Si 0.914 3.086 19 H -0.265 1.265 20 H -0.275 1.275 21 H -0.259 1.259 22 C -0.230 4.230 23 C -0.058 4.058 24 C -0.094 4.094 25 H 0.069 0.931 26 H 0.065 0.935 27 H 0.060 0.940 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.070 0.930 31 H 0.378 0.622 32 H 0.143 0.857 33 H 0.152 0.848 34 H 0.093 0.907 35 H 0.120 0.880 36 H 0.286 0.714 37 H 0.096 0.904 38 H 0.093 0.907 39 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.382 7.431 -3.983 11.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.134 3.866 3 C -0.191 4.191 4 O -0.362 6.362 5 C -0.163 4.163 6 C -0.104 4.104 7 N -0.184 5.184 8 C -0.092 4.092 9 C -0.021 4.021 10 C -0.211 4.211 11 C -0.091 4.091 12 C -0.191 4.191 13 C 0.117 3.883 14 C -0.470 4.470 15 H 0.102 0.898 16 C -0.148 4.148 17 N -0.397 5.397 18 Si 0.738 3.262 19 H -0.189 1.189 20 H -0.200 1.200 21 H -0.183 1.183 22 C -0.250 4.250 23 C -0.076 4.076 24 C -0.119 4.119 25 H 0.088 0.912 26 H 0.084 0.916 27 H 0.079 0.921 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.089 0.911 31 H 0.225 0.775 32 H 0.161 0.839 33 H 0.169 0.831 34 H 0.111 0.889 35 H 0.138 0.862 36 H 0.097 0.903 37 H 0.114 0.886 38 H 0.111 0.889 39 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -8.687 7.834 -3.169 12.119 hybrid contribution 0.960 -1.042 -0.384 1.468 sum -7.727 6.792 -3.554 10.884 Atomic orbital electron populations 1.22528 0.95323 1.02740 1.02757 1.19876 0.92271 0.92288 0.82143 1.21737 1.02356 0.92810 1.02180 1.86525 1.77405 1.29138 1.43129 1.21290 0.96724 1.01026 0.97266 1.22342 0.99713 0.99889 0.88479 1.67497 1.14935 1.07421 1.28514 1.22839 0.90287 0.97920 0.98148 1.19996 0.94735 0.94232 0.93151 1.17905 0.95890 1.11003 0.96297 1.20510 0.96398 0.96703 0.95468 1.21000 0.95941 1.03086 0.99038 1.17763 0.91876 0.88391 0.90232 1.19788 0.99826 1.12545 1.14792 0.89802 1.26066 0.99205 0.95538 0.93997 1.69807 1.31999 1.17866 1.20022 0.86203 0.81677 0.78251 0.80103 1.18941 1.20021 1.18325 1.20691 0.98190 1.08330 0.97750 1.20391 0.94434 0.97167 0.95655 1.21419 0.95166 0.96796 0.98530 0.91163 0.91606 0.92065 0.91678 0.91747 0.91121 0.77455 0.83934 0.83127 0.88866 0.86240 0.90255 0.88599 0.88913 0.84825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.66 8.13 37.16 0.30 -1.36 16 2 C 0.18 2.09 1.24 -91.77 -0.11 1.97 16 3 C -0.13 -1.48 8.83 37.16 0.33 -1.16 16 4 O -0.56 -6.93 12.04 -35.23 -0.42 -7.36 16 5 C -0.16 -2.36 4.81 -104.53 -0.50 -2.87 16 6 C 0.05 0.80 10.31 -17.46 -0.18 0.62 16 7 N -0.48 -8.41 10.35 -12.89 -0.13 -8.54 16 8 C 0.07 1.22 10.60 -17.12 -0.18 1.04 16 9 C -0.02 -0.37 5.90 -104.73 -0.62 -0.99 16 10 C -0.21 -4.54 5.90 -104.63 -0.62 -5.16 16 11 C -0.07 -1.63 9.37 -39.66 -0.37 -2.00 16 12 C -0.17 -4.23 8.63 -39.28 -0.34 -4.57 16 13 C 0.12 3.04 5.57 -106.80 -0.60 2.44 16 14 C -0.44 -10.97 9.03 -37.86 -0.34 -11.31 16 15 H 0.08 1.99 7.91 -52.48 -0.42 1.57 16 16 C 0.07 1.70 5.14 -17.33 -0.09 1.61 16 17 N -0.77 -18.69 10.95 55.55 0.61 -18.08 16 18 Si 0.91 17.35 29.60 -169.99 -5.03 12.32 16 19 H -0.26 -4.98 7.11 56.52 0.40 -4.58 16 20 H -0.28 -5.12 7.11 56.52 0.40 -4.72 16 21 H -0.26 -4.87 7.11 56.52 0.40 -4.47 16 22 C -0.23 -5.39 9.73 -39.28 -0.38 -5.77 16 23 C -0.06 -1.27 9.37 -39.66 -0.37 -1.64 16 24 C -0.09 -1.60 8.82 -38.88 -0.34 -1.95 16 25 H 0.07 0.60 6.53 -51.93 -0.34 0.26 16 26 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.38 3.75 9.04 45.56 0.41 4.16 16 32 H 0.14 1.75 6.17 -52.49 -0.32 1.43 16 33 H 0.15 2.65 6.21 -52.49 -0.33 2.32 16 34 H 0.09 1.88 6.20 -52.49 -0.33 1.55 16 35 H 0.12 3.01 6.17 -52.49 -0.32 2.69 16 36 H 0.29 6.24 8.30 -40.82 -0.34 5.90 16 37 H 0.10 2.10 8.06 -52.49 -0.42 1.67 16 38 H 0.09 1.79 6.24 -52.48 -0.33 1.46 16 39 H 0.13 2.24 5.82 -52.48 -0.31 1.94 16 LS Contribution 322.96 15.07 4.87 4.87 Total: -1.00 -27.06 322.96 -8.47 -35.54 By element: Atomic # 1 Polarization: 16.27 SS G_CDS: -3.94 Total: 12.33 kcal Atomic # 6 Polarization: -26.66 SS G_CDS: -4.42 Total: -31.07 kcal Atomic # 7 Polarization: -27.09 SS G_CDS: 0.48 Total: -26.62 kcal Atomic # 8 Polarization: -6.93 SS G_CDS: -0.42 Total: -7.36 kcal Atomic # 14 Polarization: 17.35 SS G_CDS: -5.03 Total: 12.32 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -27.06 -8.47 -35.54 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240666539.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.551 kcal (2) G-P(sol) polarization free energy of solvation -27.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds