Wall clock time and date at job start Tue Mar 31 2020 06:08:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53008 * 109.47037 * 2 1 4 4 O 1.42901 * 109.47432 * 239.99842 * 2 1 3 5 5 C 1.50703 * 109.47423 * 119.99988 * 2 1 3 6 6 C 1.38310 * 120.35945 * 330.02137 * 5 2 1 7 7 N 1.31885 * 121.02951 * 179.97438 * 6 5 2 8 8 C 1.31746 * 121.84910 * 0.04581 * 7 6 5 9 9 C 1.39291 * 120.60165 * 359.95687 * 8 7 6 10 10 C 1.48406 * 120.53727 * 180.29053 * 9 8 7 11 11 C 1.39733 * 119.99829 * 179.44409 * 10 9 8 12 12 C 1.38392 * 120.37561 * 179.76662 * 11 10 9 13 13 C 1.37717 * 120.37913 * 0.51618 * 12 11 10 14 14 C 1.40751 * 119.99207 * 359.74214 * 13 12 11 15 15 C 1.41424 * 120.18822 * 180.02562 * 14 13 12 16 16 H 1.07996 * 119.99943 * 150.18220 * 15 14 13 17 17 C 1.39936 * 119.99941 * 330.18039 * 15 14 13 18 18 N 1.30825 * 120.00122 * 161.73521 * 17 15 14 19 19 Si 1.86799 * 119.99938 * 341.72773 * 17 15 14 20 20 H 1.48500 * 109.46733 * 95.41615 * 19 17 15 21 21 H 1.48491 * 109.47187 * 215.41620 * 19 17 15 22 22 H 1.48502 * 109.47498 * 335.41939 * 19 17 15 23 23 C 1.38725 * 120.00023 * 359.72875 * 10 9 8 24 24 C 1.38415 * 120.36152 * 150.00420 * 5 2 1 25 25 H 1.08999 * 109.47034 * 300.00025 * 1 2 3 26 26 H 1.08996 * 109.47538 * 60.00017 * 1 2 3 27 27 H 1.09004 * 109.47008 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46831 * 179.97438 * 3 2 1 29 29 H 1.08997 * 109.46866 * 299.99800 * 3 2 1 30 30 H 1.08997 * 109.46725 * 60.00042 * 3 2 1 31 31 H 0.96703 * 114.00051 * 179.97438 * 4 2 1 32 32 H 1.08003 * 119.48230 * 359.97438 * 6 5 2 33 33 H 1.08004 * 119.69865 * 179.97438 * 8 7 6 34 34 H 1.07993 * 119.80626 * 0.02621 * 11 10 9 35 35 H 1.08003 * 119.80598 * 180.23919 * 12 11 10 36 36 H 1.08001 * 120.00458 * 179.72330 * 13 12 11 37 37 H 0.96990 * 120.00268 * 179.97438 * 18 17 15 38 38 H 1.08002 * 120.18610 * 359.97438 * 23 10 9 39 39 H 1.07998 * 120.84276 * 359.97438 * 24 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 2.0064 -0.6737 -1.1667 5 6 2.0324 -0.7104 1.2305 6 6 1.2908 -0.6958 2.3979 7 7 1.7176 -1.3134 3.4822 8 6 2.8611 -1.9673 3.5052 9 6 3.6658 -2.0287 2.3699 10 6 4.9506 -2.7710 2.3955 11 6 5.7435 -2.8350 1.2467 12 6 6.9453 -3.5211 1.2633 13 6 7.3683 -4.1574 2.4090 14 6 6.5795 -4.1076 3.5736 15 6 7.0102 -4.7591 4.7527 16 1 6.7256 -4.3702 5.7192 17 6 7.8049 -5.9076 4.6670 18 7 8.4941 -6.3052 5.7055 19 14 7.8817 -6.8733 3.0698 20 1 9.0641 -6.4373 2.2842 21 1 7.9954 -8.3225 3.3725 22 1 6.6466 -6.6274 2.2828 23 6 5.3615 -3.4063 3.5583 24 6 3.2408 -1.3849 1.2045 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 3.1300 1.4425 0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6766 1.9563 0.8900 31 1 2.9704 -0.7115 -1.2330 32 1 0.3475 -0.1704 2.4218 33 1 3.1773 -2.4605 4.4125 34 1 5.4186 -2.3428 0.3421 35 1 7.5528 -3.5614 0.3712 36 1 8.3051 -4.6948 2.4139 37 1 9.0447 -7.1015 5.6462 38 1 4.7490 -3.3623 4.4467 39 1 3.8399 -1.4131 0.3064 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240667113.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:35 Heat of formation + Delta-G solvation = -8.187968 kcal Electronic energy + Delta-G solvation = -21232.775316 eV Core-core repulsion = 18104.343307 eV Total energy + Delta-G solvation = -3128.432009 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.48941 -38.20536 -37.48034 -34.03103 -33.14424 -32.59513 -30.68472 -30.35651 -28.47142 -27.53768 -25.46619 -23.91290 -23.34352 -21.53956 -20.38160 -20.05600 -18.03456 -17.11823 -16.60348 -16.15161 -15.83409 -15.23280 -14.68252 -14.46882 -14.10781 -13.91598 -13.62505 -13.22177 -13.03198 -12.78957 -12.70797 -12.48883 -12.33042 -12.11777 -12.02633 -11.83852 -11.60361 -11.20494 -10.94741 -10.91276 -10.62492 -10.37761 -9.93111 -9.76625 -9.66104 -9.27867 -9.13693 -8.97187 -7.81851 -7.38124 -7.02795 -4.58887 1.02697 1.37252 2.50300 2.67744 3.05028 3.16204 3.26090 3.88767 3.92309 4.10280 4.37524 4.47920 4.59213 4.71455 4.78416 5.01890 5.14361 5.18993 5.31718 5.35176 5.48349 5.51389 5.58910 5.71581 5.81268 5.85656 5.94083 5.99081 6.07452 6.26746 6.31644 6.39336 6.56350 6.82511 6.86412 7.02462 7.26587 7.42307 7.43992 7.57915 7.73831 7.93241 8.15870 8.25502 8.51729 8.70015 9.99478 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.030324 B = 0.003957 C = 0.003676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.135924 B = 7073.803533 C = 7614.653322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.175 3.825 3 C -0.174 4.174 4 O -0.555 6.555 5 C -0.164 4.164 6 C 0.084 3.916 7 N -0.479 5.479 8 C 0.097 3.903 9 C -0.058 4.058 10 C -0.029 4.029 11 C -0.227 4.227 12 C -0.078 4.078 13 C -0.229 4.229 14 C 0.091 3.909 15 C -0.447 4.447 16 H 0.092 0.908 17 C 0.085 3.915 18 N -0.805 5.805 19 Si 0.910 3.090 20 H -0.270 1.270 21 H -0.290 1.290 22 H -0.244 1.244 23 C -0.185 4.185 24 C -0.072 4.072 25 H 0.074 0.926 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.060 0.940 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.376 0.624 32 H 0.151 0.849 33 H 0.162 0.838 34 H 0.096 0.904 35 H 0.097 0.903 36 H 0.102 0.898 37 H 0.286 0.714 38 H 0.106 0.894 39 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.999 9.982 -9.862 17.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.133 3.867 3 C -0.231 4.231 4 O -0.362 6.362 5 C -0.166 4.166 6 C -0.073 4.073 7 N -0.186 5.186 8 C -0.060 4.060 9 C -0.060 4.060 10 C -0.030 4.030 11 C -0.246 4.246 12 C -0.097 4.097 13 C -0.249 4.249 14 C 0.088 3.912 15 C -0.476 4.476 16 H 0.110 0.890 17 C -0.135 4.135 18 N -0.429 5.429 19 Si 0.737 3.263 20 H -0.196 1.196 21 H -0.217 1.217 22 H -0.167 1.167 23 C -0.204 4.204 24 C -0.097 4.097 25 H 0.093 0.907 26 H 0.085 0.915 27 H 0.085 0.915 28 H 0.079 0.921 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.225 0.775 32 H 0.168 0.832 33 H 0.179 0.821 34 H 0.114 0.886 35 H 0.115 0.885 36 H 0.120 0.880 37 H 0.097 0.903 38 H 0.124 0.876 39 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -10.993 9.778 -9.010 17.252 hybrid contribution 1.470 -0.538 -1.174 1.957 sum -9.522 9.240 -10.184 16.726 Atomic orbital electron populations 1.21821 0.91967 1.03254 1.02548 1.19914 0.94831 0.90041 0.81870 1.22489 1.01911 0.95789 1.02930 1.86572 1.26951 1.79567 1.43060 1.21361 0.96473 1.01169 0.97589 1.22553 0.99231 0.97504 0.88036 1.67658 1.14803 1.07676 1.28479 1.23053 0.89341 0.95394 0.98186 1.20062 0.95578 0.96561 0.93785 1.18252 0.91767 0.97858 0.95106 1.20361 0.97854 1.09481 0.96891 1.20534 0.95451 0.96939 0.96747 1.21142 1.00908 1.07673 0.95137 1.17645 0.89964 0.91155 0.92416 1.19497 1.25414 1.08506 0.94150 0.88983 1.26150 0.91458 0.97647 0.98207 1.69687 1.19207 1.22070 1.31933 0.86323 0.81098 0.77197 0.81720 1.19597 1.21695 1.16723 1.21132 0.97347 1.05408 0.96496 1.21355 0.94784 0.95422 0.98184 0.90718 0.91479 0.91498 0.92051 0.91366 0.91279 0.77512 0.83186 0.82136 0.88641 0.88492 0.88047 0.90335 0.87564 0.85013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.26 8.16 37.15 0.30 -0.95 16 2 C 0.17 1.84 1.27 -91.77 -0.12 1.72 16 3 C -0.17 -1.53 8.80 37.16 0.33 -1.20 16 4 O -0.55 -6.30 12.72 -35.23 -0.45 -6.74 16 5 C -0.16 -2.13 4.85 -104.53 -0.51 -2.64 16 6 C 0.08 1.14 10.30 -17.50 -0.18 0.96 16 7 N -0.48 -7.75 10.35 -12.97 -0.13 -7.88 16 8 C 0.10 1.66 10.60 -17.20 -0.18 1.48 16 9 C -0.06 -1.01 5.89 -104.75 -0.62 -1.63 16 10 C -0.03 -0.58 5.87 -104.97 -0.62 -1.20 16 11 C -0.23 -4.42 9.45 -38.97 -0.37 -4.78 16 12 C -0.08 -1.61 10.01 -39.71 -0.40 -2.01 16 13 C -0.23 -5.32 7.17 -38.82 -0.28 -5.60 16 14 C 0.09 2.23 5.10 -106.86 -0.55 1.68 16 15 C -0.45 -11.74 9.57 -37.73 -0.36 -12.10 16 16 H 0.09 2.52 8.06 -52.49 -0.42 2.09 16 17 C 0.08 2.17 5.40 -17.34 -0.09 2.07 16 18 N -0.81 -21.02 13.93 55.55 0.77 -20.24 16 19 Si 0.91 20.30 24.52 -169.99 -4.17 16.14 16 20 H -0.27 -5.82 6.71 56.52 0.38 -5.44 16 21 H -0.29 -6.25 7.11 56.52 0.40 -5.85 16 22 H -0.24 -5.60 6.86 56.52 0.39 -5.21 16 23 C -0.18 -4.10 9.18 -38.53 -0.35 -4.46 16 24 C -0.07 -1.06 8.78 -38.95 -0.34 -1.41 16 25 H 0.07 0.54 6.53 -51.93 -0.34 0.20 16 26 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 29 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.38 3.31 7.39 45.56 0.34 3.65 16 32 H 0.15 1.59 6.17 -52.48 -0.32 1.27 16 33 H 0.16 2.65 6.22 -52.48 -0.33 2.33 16 34 H 0.10 1.57 6.25 -52.49 -0.33 1.24 16 35 H 0.10 1.71 8.06 -52.48 -0.42 1.29 16 36 H 0.10 2.35 4.72 -52.49 -0.25 2.10 16 37 H 0.29 6.76 8.30 -40.82 -0.34 6.42 16 38 H 0.11 2.20 6.22 -52.49 -0.33 1.88 16 39 H 0.13 1.69 4.85 -52.49 -0.25 1.44 16 LS Contribution 316.05 15.07 4.76 4.76 Total: -1.00 -28.40 316.05 -7.48 -35.88 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: -3.94 Total: 8.16 kcal Atomic # 6 Polarization: -25.74 SS G_CDS: -4.33 Total: -30.07 kcal Atomic # 7 Polarization: -28.77 SS G_CDS: 0.64 Total: -28.13 kcal Atomic # 8 Polarization: -6.30 SS G_CDS: -0.45 Total: -6.74 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -4.17 Total: 16.14 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -28.40 -7.48 -35.88 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240667113.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.692 kcal (2) G-P(sol) polarization free energy of solvation -28.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds