Wall clock time and date at job start Tue Mar 31 2020 06:08:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53008 * 109.47037 * 2 1 4 4 O 1.42901 * 109.47432 * 239.99842 * 2 1 3 5 5 C 1.50703 * 109.47423 * 119.99988 * 2 1 3 6 6 C 1.38310 * 120.35945 * 330.02137 * 5 2 1 7 7 N 1.31885 * 121.02951 * 179.97438 * 6 5 2 8 8 C 1.31746 * 121.84910 * 0.04581 * 7 6 5 9 9 C 1.39291 * 120.60165 * 359.95687 * 8 7 6 10 10 C 1.48406 * 120.53727 * 180.29053 * 9 8 7 11 11 C 1.39733 * 119.99829 * 179.44409 * 10 9 8 12 12 C 1.38392 * 120.37561 * 179.76662 * 11 10 9 13 13 C 1.37717 * 120.37913 * 0.51618 * 12 11 10 14 14 C 1.40751 * 119.99207 * 359.74214 * 13 12 11 15 15 C 1.41424 * 120.18822 * 180.02562 * 14 13 12 16 16 H 1.07996 * 119.99943 * 150.18220 * 15 14 13 17 17 C 1.39936 * 119.99941 * 330.18039 * 15 14 13 18 18 N 1.30825 * 120.00122 * 161.73521 * 17 15 14 19 19 Si 1.86799 * 119.99938 * 341.72773 * 17 15 14 20 20 H 1.48500 * 109.46733 * 95.41615 * 19 17 15 21 21 H 1.48491 * 109.47187 * 215.41620 * 19 17 15 22 22 H 1.48502 * 109.47498 * 335.41939 * 19 17 15 23 23 C 1.38725 * 120.00023 * 359.72875 * 10 9 8 24 24 C 1.38415 * 120.36152 * 150.00420 * 5 2 1 25 25 H 1.08999 * 109.47034 * 300.00025 * 1 2 3 26 26 H 1.08996 * 109.47538 * 60.00017 * 1 2 3 27 27 H 1.09004 * 109.47008 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46831 * 179.97438 * 3 2 1 29 29 H 1.08997 * 109.46866 * 299.99800 * 3 2 1 30 30 H 1.08997 * 109.46725 * 60.00042 * 3 2 1 31 31 H 0.96703 * 114.00051 * 179.97438 * 4 2 1 32 32 H 1.08003 * 119.48230 * 359.97438 * 6 5 2 33 33 H 1.08004 * 119.69865 * 179.97438 * 8 7 6 34 34 H 1.07993 * 119.80626 * 0.02621 * 11 10 9 35 35 H 1.08003 * 119.80598 * 180.23919 * 12 11 10 36 36 H 1.08001 * 120.00458 * 179.72330 * 13 12 11 37 37 H 0.96990 * 120.00268 * 179.97438 * 18 17 15 38 38 H 1.08002 * 120.18610 * 359.97438 * 23 10 9 39 39 H 1.07998 * 120.84276 * 359.97438 * 24 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 2.0064 -0.6737 -1.1667 5 6 2.0324 -0.7104 1.2305 6 6 1.2908 -0.6958 2.3979 7 7 1.7176 -1.3134 3.4822 8 6 2.8611 -1.9673 3.5052 9 6 3.6658 -2.0287 2.3699 10 6 4.9506 -2.7710 2.3955 11 6 5.7435 -2.8350 1.2467 12 6 6.9453 -3.5211 1.2633 13 6 7.3683 -4.1574 2.4090 14 6 6.5795 -4.1076 3.5736 15 6 7.0102 -4.7591 4.7527 16 1 6.7256 -4.3702 5.7192 17 6 7.8049 -5.9076 4.6670 18 7 8.4941 -6.3052 5.7055 19 14 7.8817 -6.8733 3.0698 20 1 9.0641 -6.4373 2.2842 21 1 7.9954 -8.3225 3.3725 22 1 6.6466 -6.6274 2.2828 23 6 5.3615 -3.4063 3.5583 24 6 3.2408 -1.3849 1.2045 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 3.1300 1.4425 0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6766 1.9563 0.8900 31 1 2.9704 -0.7115 -1.2330 32 1 0.3475 -0.1704 2.4218 33 1 3.1773 -2.4605 4.4125 34 1 5.4186 -2.3428 0.3421 35 1 7.5528 -3.5614 0.3712 36 1 8.3051 -4.6948 2.4139 37 1 9.0447 -7.1015 5.6462 38 1 4.7490 -3.3623 4.4467 39 1 3.8399 -1.4131 0.3064 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240667113.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:35 Heat of formation + Delta-G solvation = -26.029196 kcal Electronic energy + Delta-G solvation = -21233.548969 eV Core-core repulsion = 18104.343307 eV Total energy + Delta-G solvation = -3129.205663 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.64178 -39.63323 -38.63221 -35.76546 -34.27141 -33.89970 -32.22155 -31.68608 -29.82010 -28.26178 -27.22508 -25.18285 -24.61890 -22.88092 -22.04346 -21.19457 -19.40981 -18.61983 -17.77895 -17.42379 -17.33675 -16.42921 -16.14633 -15.60681 -15.39820 -15.16577 -15.03193 -14.61612 -14.39319 -14.33063 -13.91466 -13.61586 -13.44794 -13.26293 -13.06397 -12.88339 -12.78323 -12.66650 -12.58393 -12.30633 -11.91455 -11.66588 -11.54694 -11.33126 -11.13394 -10.88976 -10.37232 -10.18471 -9.57725 -8.95314 -8.91147 -6.54014 -0.28997 0.19507 0.77204 1.09422 1.25360 1.39784 1.48147 2.10339 2.51894 2.85431 3.25293 3.38645 3.52098 3.58073 3.71759 3.87481 3.96626 4.01433 4.10726 4.24136 4.45444 4.48885 4.57071 4.70195 4.77166 4.83452 4.87285 4.91342 4.98065 5.00777 5.10310 5.18237 5.26047 5.27020 5.36778 5.55509 5.65702 5.76436 5.85586 5.93507 6.19799 6.35663 6.69340 6.73732 6.79302 6.95140 8.17177 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.030324 B = 0.003957 C = 0.003676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.135924 B = 7073.803533 C = 7614.653322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.176 3.824 3 C -0.171 4.171 4 O -0.567 6.567 5 C -0.155 4.155 6 C 0.089 3.911 7 N -0.497 5.497 8 C 0.083 3.917 9 C -0.085 4.085 10 C -0.025 4.025 11 C -0.209 4.209 12 C -0.081 4.081 13 C -0.245 4.245 14 C 0.073 3.927 15 C -0.489 4.489 16 H 0.055 0.945 17 C 0.048 3.952 18 N -0.851 5.851 19 Si 0.965 3.035 20 H -0.254 1.254 21 H -0.278 1.278 22 H -0.254 1.254 23 C -0.205 4.205 24 C -0.066 4.066 25 H 0.093 0.907 26 H 0.078 0.922 27 H 0.054 0.946 28 H 0.059 0.941 29 H 0.081 0.919 30 H 0.075 0.925 31 H 0.387 0.613 32 H 0.184 0.816 33 H 0.150 0.850 34 H 0.138 0.862 35 H 0.135 0.865 36 H 0.099 0.901 37 H 0.294 0.706 38 H 0.103 0.897 39 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.627 11.919 -13.829 21.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.135 3.865 3 C -0.228 4.228 4 O -0.375 6.375 5 C -0.157 4.157 6 C -0.068 4.068 7 N -0.205 5.205 8 C -0.073 4.073 9 C -0.087 4.087 10 C -0.026 4.026 11 C -0.228 4.228 12 C -0.099 4.099 13 C -0.264 4.264 14 C 0.071 3.929 15 C -0.518 4.518 16 H 0.073 0.927 17 C -0.166 4.166 18 N -0.477 5.477 19 Si 0.788 3.212 20 H -0.179 1.179 21 H -0.205 1.205 22 H -0.178 1.178 23 C -0.225 4.225 24 C -0.092 4.092 25 H 0.112 0.888 26 H 0.097 0.903 27 H 0.073 0.927 28 H 0.078 0.922 29 H 0.100 0.900 30 H 0.094 0.906 31 H 0.237 0.763 32 H 0.201 0.799 33 H 0.167 0.833 34 H 0.156 0.844 35 H 0.153 0.847 36 H 0.116 0.884 37 H 0.104 0.896 38 H 0.121 0.879 39 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -12.608 11.721 -12.975 21.556 hybrid contribution 1.708 -0.855 -0.098 1.913 sum -10.900 10.866 -13.073 20.194 Atomic orbital electron populations 1.21899 0.90842 1.03006 1.04153 1.20052 0.95679 0.90495 0.80285 1.22469 1.01873 0.94502 1.03971 1.86574 1.28095 1.79781 1.43087 1.21714 0.95452 1.00049 0.98529 1.23194 1.00087 0.96058 0.87428 1.67690 1.14477 1.08383 1.29943 1.22975 0.90098 0.96079 0.98139 1.19930 0.94979 0.98475 0.95281 1.18536 0.92911 0.96770 0.94377 1.20923 0.96665 1.07361 0.97839 1.20972 0.96171 0.95719 0.97031 1.21276 1.00889 1.08580 0.95690 1.17780 0.90997 0.91664 0.92509 1.19471 1.28216 1.10555 0.93578 0.92665 1.26807 0.90903 0.97895 1.01012 1.69721 1.20949 1.23334 1.33703 0.85495 0.80899 0.76459 0.78322 1.17931 1.20508 1.17813 1.21268 0.97114 1.06246 0.97828 1.21613 0.95488 0.94311 0.97742 0.88838 0.90312 0.92657 0.92156 0.90027 0.90616 0.76324 0.79921 0.83270 0.84403 0.84701 0.88373 0.89588 0.87868 0.82714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.97 8.16 71.98 0.59 -1.39 16 2 C 0.18 2.94 1.27 -11.54 -0.01 2.93 16 3 C -0.17 -2.24 8.80 71.98 0.63 -1.60 16 4 O -0.57 -10.41 12.72 -148.98 -1.90 -12.31 16 5 C -0.16 -3.47 4.85 -19.80 -0.10 -3.57 16 6 C 0.09 2.16 10.30 84.70 0.87 3.03 16 7 N -0.50 -15.42 10.35 -194.96 -2.02 -17.44 16 8 C 0.08 2.84 10.60 84.96 0.90 3.74 16 9 C -0.08 -2.83 5.89 -19.95 -0.12 -2.95 16 10 C -0.03 -0.98 5.87 -20.09 -0.12 -1.10 16 11 C -0.21 -7.42 9.45 22.67 0.21 -7.20 16 12 C -0.08 -3.09 10.01 22.18 0.22 -2.87 16 13 C -0.25 -11.27 7.17 22.76 0.16 -11.11 16 14 C 0.07 3.70 5.10 -21.32 -0.11 3.59 16 15 C -0.49 -27.58 9.57 23.47 0.22 -27.35 16 16 H 0.06 3.36 8.06 -2.91 -0.02 3.34 16 17 C 0.05 2.59 5.40 85.25 0.46 3.05 16 18 N -0.85 -46.99 13.93 21.82 0.30 -46.69 16 19 Si 0.96 42.67 24.52 68.60 1.68 44.35 16 20 H -0.25 -10.46 6.71 99.48 0.67 -9.80 16 21 H -0.28 -11.62 7.11 99.48 0.71 -10.91 16 22 H -0.25 -11.51 6.86 99.48 0.68 -10.82 16 23 C -0.21 -9.45 9.18 22.95 0.21 -9.24 16 24 C -0.07 -1.72 8.78 22.68 0.20 -1.52 16 25 H 0.09 0.91 6.53 -2.39 -0.02 0.90 16 26 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 27 H 0.05 0.91 8.14 -2.38 -0.02 0.89 16 28 H 0.06 0.81 8.14 -2.38 -0.02 0.79 16 29 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.39 4.98 7.39 -74.05 -0.55 4.44 16 32 H 0.18 3.09 6.17 -2.91 -0.02 3.07 16 33 H 0.15 5.24 6.22 -2.91 -0.02 5.22 16 34 H 0.14 3.71 6.25 -2.91 -0.02 3.69 16 35 H 0.14 4.11 8.06 -2.91 -0.02 4.09 16 36 H 0.10 4.51 4.72 -2.91 -0.01 4.50 16 37 H 0.29 14.54 8.30 -92.72 -0.77 13.77 16 38 H 0.10 4.64 6.22 -2.91 -0.02 4.62 16 39 H 0.16 3.19 4.85 -2.91 -0.01 3.17 16 Total: -1.00 -64.78 316.05 2.79 -61.99 By element: Atomic # 1 Polarization: 23.17 SS G_CDS: 0.48 Total: 23.65 kcal Atomic # 6 Polarization: -57.79 SS G_CDS: 4.23 Total: -53.56 kcal Atomic # 7 Polarization: -62.41 SS G_CDS: -1.71 Total: -64.13 kcal Atomic # 8 Polarization: -10.41 SS G_CDS: -1.90 Total: -12.31 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 1.68 Total: 44.35 kcal Total: -64.78 2.79 -61.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240667113.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.962 kcal (2) G-P(sol) polarization free energy of solvation -64.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds