Wall clock time and date at job start Tue Mar 31 2020 05:35:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35529 * 117.00109 * 2 1 4 4 C 1.39118 * 120.48579 * 0.21529 * 3 2 1 5 5 C 1.38321 * 118.64047 * 180.22246 * 4 3 2 6 6 C 1.40072 * 119.56893 * 359.52247 * 5 4 3 7 7 C 1.48265 * 119.51796 * 180.25912 * 6 5 4 8 8 C 1.39442 * 120.12428 * 4.99393 * 7 6 5 9 9 C 1.37975 * 119.86525 * 179.97438 * 8 7 6 10 10 C 1.38365 * 120.13117 * 0.02562 * 9 8 7 11 11 C 1.50697 * 119.87197 * 180.02562 * 10 9 8 12 12 C 1.38325 * 120.25926 * 0.02562 * 10 9 8 13 13 C 1.50697 * 119.93717 * 180.02562 * 12 10 9 14 14 C 1.38018 * 120.12440 * 359.74055 * 12 10 9 15 15 N 1.32182 * 120.96567 * 0.27893 * 6 5 4 16 16 C 1.33566 * 121.45977 * 359.97356 * 15 6 5 17 17 C 1.41007 * 119.82847 * 180.02562 * 16 15 6 18 18 H 1.08000 * 119.99764 * 180.02562 * 17 16 15 19 19 C 1.40025 * 120.00326 * 0.02562 * 17 16 15 20 20 N 1.30768 * 119.99893 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 119.99938 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47320 * 0.02562 * 21 19 17 23 23 H 1.48507 * 109.47061 * 120.00070 * 21 19 17 24 24 H 1.48501 * 109.47310 * 239.99921 * 21 19 17 25 25 H 1.09001 * 109.47198 * 59.99400 * 1 2 3 26 26 H 1.08990 * 109.47020 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46508 * 299.99601 * 1 2 3 28 28 H 1.08000 * 120.68058 * 0.02562 * 4 3 2 29 29 H 1.08002 * 120.21872 * 179.80532 * 5 4 3 30 30 H 1.07999 * 120.06867 * 359.96540 * 8 7 6 31 31 H 1.08003 * 119.93164 * 180.02562 * 9 8 7 32 32 H 1.08997 * 109.46888 * 89.99789 * 11 10 9 33 33 H 1.08996 * 109.46933 * 210.00092 * 11 10 9 34 34 H 1.09001 * 109.46947 * 330.00113 * 11 10 9 35 35 H 1.09004 * 109.46567 * 89.99774 * 13 12 10 36 36 H 1.08996 * 109.47325 * 210.00104 * 13 12 10 37 37 H 1.08997 * 109.46869 * 330.00386 * 13 12 10 38 38 H 1.08001 * 120.06246 * 180.25718 * 14 12 10 39 39 H 0.97002 * 120.00375 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0444 1.2076 0.0000 4 6 1.2966 2.3807 0.0045 5 6 1.9639 3.5923 -0.0004 6 6 3.3645 3.6100 0.0005 7 6 4.0787 4.9093 0.0011 8 6 3.3628 6.1013 0.1058 9 6 4.0328 7.3074 0.1063 10 6 5.4123 7.3357 0.0028 11 6 6.1382 8.6563 0.0045 12 6 6.1277 6.1565 -0.1024 13 6 7.6300 6.1957 -0.2143 14 6 5.4686 4.9438 -0.0992 15 7 4.0589 2.4852 0.0004 16 6 3.4556 1.2936 0.0000 17 6 4.2302 0.1153 0.0005 18 1 3.7453 -0.8497 -0.0003 19 6 5.6281 0.1963 0.0019 20 7 6.2153 1.3648 0.0033 21 14 6.6541 -1.3646 0.0032 22 1 5.7561 -2.5473 0.0019 23 1 7.5123 -1.3939 -1.2085 24 1 7.5098 -1.3936 1.2166 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3632 0.5138 0.8901 28 1 0.2172 2.3462 0.0085 29 1 1.4087 4.5187 -0.0002 30 1 2.2860 6.0805 0.1861 31 1 3.4794 8.2313 0.1878 32 1 6.3910 8.9305 1.0287 33 1 7.0513 8.5697 -0.5844 34 1 5.4973 9.4237 -0.4295 35 1 8.0695 6.1608 0.7826 36 1 7.9737 5.3385 -0.7932 37 1 7.9332 7.1162 -0.7130 38 1 6.0285 4.0235 -0.1772 39 1 7.1837 1.4210 0.0039 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240701520.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:13 Heat of formation + Delta-G solvation = 10.854130 kcal Electronic energy + Delta-G solvation = -21501.118560 eV Core-core repulsion = 18373.512279 eV Total energy + Delta-G solvation = -3127.606282 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.29695 -38.58480 -36.66519 -33.94178 -32.81372 -31.68663 -30.43399 -29.49998 -27.13436 -26.64644 -26.33523 -24.68290 -21.93506 -21.68568 -20.84109 -19.35341 -17.47349 -16.71507 -16.08890 -15.31989 -15.04460 -14.77559 -14.57710 -14.42101 -13.91427 -13.49804 -13.05109 -12.80939 -12.59838 -12.51750 -12.44698 -12.41801 -12.07524 -11.62068 -11.45999 -11.39098 -11.26219 -11.15566 -10.69358 -10.51925 -10.35216 -10.35041 -10.29555 -9.79286 -9.45181 -8.30933 -8.11914 -8.07182 -7.76230 -6.84308 -6.45794 -4.41630 1.61327 2.04096 2.75719 2.98631 3.10924 3.16410 3.18967 3.96192 4.34581 4.39210 4.83917 5.21090 5.26807 5.37878 5.48191 5.54802 5.68548 5.69994 5.72149 5.85813 5.87764 5.91642 5.96857 5.99102 6.01939 6.10624 6.22659 6.26076 6.36878 6.61433 6.67646 6.70275 6.85189 7.00069 7.15337 7.23004 7.30531 7.44481 7.58578 7.69537 7.89194 8.18128 8.29402 8.68996 8.97856 9.98873 10.28396 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.014289 B = 0.006021 C = 0.004255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1959.040668 B = 4649.403338 C = 6579.085397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.309 6.309 3 C -0.027 4.027 4 C -0.148 4.148 5 C -0.270 4.270 6 C 0.150 3.850 7 C -0.015 4.015 8 C -0.117 4.117 9 C -0.130 4.130 10 C -0.103 4.103 11 C -0.111 4.111 12 C -0.101 4.101 13 C -0.111 4.111 14 C -0.078 4.078 15 N -0.450 5.450 16 C 0.253 3.747 17 C -0.412 4.412 18 H 0.091 0.909 19 C 0.068 3.932 20 N -0.717 5.717 21 Si 0.909 3.091 22 H -0.260 1.260 23 H -0.273 1.273 24 H -0.273 1.273 25 H 0.040 0.960 26 H 0.083 0.917 27 H 0.040 0.960 28 H 0.104 0.896 29 H 0.100 0.900 30 H 0.119 0.881 31 H 0.113 0.887 32 H 0.063 0.937 33 H 0.065 0.935 34 H 0.058 0.942 35 H 0.064 0.936 36 H 0.065 0.935 37 H 0.062 0.938 38 H 0.154 0.846 39 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.820 7.233 -0.112 7.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.222 6.222 3 C -0.076 4.076 4 C -0.172 4.172 5 C -0.293 4.293 6 C 0.008 3.992 7 C -0.016 4.016 8 C -0.136 4.136 9 C -0.148 4.148 10 C -0.104 4.104 11 C -0.167 4.167 12 C -0.101 4.101 13 C -0.167 4.167 14 C -0.096 4.096 15 N -0.165 5.165 16 C 0.125 3.875 17 C -0.444 4.444 18 H 0.109 0.891 19 C -0.157 4.157 20 N -0.339 5.339 21 Si 0.733 3.267 22 H -0.183 1.183 23 H -0.199 1.199 24 H -0.199 1.199 25 H 0.058 0.942 26 H 0.102 0.898 27 H 0.058 0.942 28 H 0.122 0.878 29 H 0.118 0.882 30 H 0.137 0.863 31 H 0.131 0.869 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.077 0.923 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.081 0.919 38 H 0.171 0.829 39 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 0.372 7.131 -0.112 7.142 hybrid contribution -1.038 -0.453 0.046 1.133 sum -0.666 6.678 -0.067 6.711 Atomic orbital electron populations 1.22761 0.81678 1.01906 0.99955 1.85941 1.18344 1.27857 1.90016 1.20361 0.93707 0.83217 1.10284 1.20870 0.97756 0.92623 1.05980 1.21001 0.94247 0.96224 1.17878 1.19695 0.89430 0.92149 0.97882 1.18771 0.93078 0.91432 0.98332 1.21191 0.99632 0.91751 1.00993 1.20726 0.93569 0.97223 1.03241 1.19667 0.93703 0.94545 1.02452 1.20781 1.00032 0.94214 1.01675 1.19715 0.95659 0.92741 1.01996 1.20785 0.91985 1.02172 1.01800 1.21624 0.94074 0.98130 0.95797 1.68873 1.34764 0.95279 1.17554 1.18140 0.84991 0.92099 0.92274 1.19562 0.90600 0.93009 1.41239 0.89076 1.26045 0.98684 0.97276 0.93676 1.70097 1.10309 1.24533 1.28949 0.86239 0.79777 0.82188 0.78475 1.18330 1.19868 1.19870 0.94165 0.89842 0.94165 0.87813 0.88223 0.86270 0.86905 0.91848 0.91591 0.92301 0.91733 0.91567 0.91949 0.82883 0.91716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.56 9.83 101.05 0.99 1.55 16 2 O -0.31 -7.05 9.61 -18.28 -0.18 -7.23 16 3 C -0.03 -0.68 6.74 -38.06 -0.26 -0.94 16 4 C -0.15 -3.37 9.11 -39.22 -0.36 -3.72 16 5 C -0.27 -6.18 9.45 -38.86 -0.37 -6.55 16 6 C 0.15 3.71 6.73 -82.91 -0.56 3.15 16 7 C -0.02 -0.34 5.87 -104.89 -0.62 -0.95 16 8 C -0.12 -2.16 9.41 -39.23 -0.37 -2.53 16 9 C -0.13 -2.09 9.68 -39.63 -0.38 -2.47 16 10 C -0.10 -1.64 5.89 -104.54 -0.62 -2.25 16 11 C -0.11 -1.31 9.60 36.00 0.35 -0.96 16 12 C -0.10 -1.77 5.87 -104.67 -0.61 -2.39 16 13 C -0.11 -1.58 9.60 36.00 0.35 -1.23 16 14 C -0.08 -1.64 9.22 -39.23 -0.36 -2.01 16 15 N -0.45 -12.28 6.91 -7.56 -0.05 -12.33 16 16 C 0.25 6.98 6.56 -84.86 -0.56 6.42 16 17 C -0.41 -11.13 8.94 -37.86 -0.34 -11.46 16 18 H 0.09 2.40 7.31 -52.49 -0.38 2.01 16 19 C 0.07 1.71 5.50 -17.34 -0.10 1.61 16 20 N -0.72 -18.39 11.12 55.55 0.62 -17.77 16 21 Si 0.91 18.62 29.56 -169.99 -5.02 13.59 16 22 H -0.26 -5.29 7.11 56.52 0.40 -4.89 16 23 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 24 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 25 H 0.04 0.63 7.70 -51.93 -0.40 0.23 16 26 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 27 H 0.04 0.63 7.68 -51.93 -0.40 0.23 16 28 H 0.10 2.01 6.43 -52.49 -0.34 1.68 16 29 H 0.10 1.99 6.19 -52.49 -0.33 1.67 16 30 H 0.12 2.02 6.19 -52.49 -0.32 1.70 16 31 H 0.11 1.49 8.06 -52.48 -0.42 1.06 16 32 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.07 0.71 5.93 -51.93 -0.31 0.41 16 34 H 0.06 0.61 8.08 -51.93 -0.42 0.19 16 35 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.07 0.96 8.09 -51.93 -0.42 0.54 16 37 H 0.06 0.74 5.93 -51.93 -0.31 0.44 16 38 H 0.15 3.57 7.20 -52.49 -0.38 3.19 16 39 H 0.27 6.28 8.30 -40.82 -0.34 5.95 16 LS Contribution 324.03 15.07 4.88 4.88 Total: -1.00 -29.59 324.03 -8.39 -37.98 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: -4.83 Total: 5.61 kcal Atomic # 6 Polarization: -20.93 SS G_CDS: -3.81 Total: -24.74 kcal Atomic # 7 Polarization: -30.66 SS G_CDS: 0.57 Total: -30.10 kcal Atomic # 8 Polarization: -7.05 SS G_CDS: -0.18 Total: -7.23 kcal Atomic # 14 Polarization: 18.62 SS G_CDS: -5.02 Total: 13.59 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -29.59 -8.39 -37.98 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240701520.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.835 kcal (2) G-P(sol) polarization free energy of solvation -29.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.981 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds