Wall clock time and date at job start Tue Mar 31 2020 05:40:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35596 * 116.99816 * 2 1 4 4 C 1.38513 * 120.08658 * 0.02562 * 3 2 1 5 5 C 1.38034 * 120.31046 * 180.02562 * 4 3 2 6 6 C 1.39925 * 120.46918 * 359.97438 * 5 4 3 7 7 C 1.48379 * 119.91725 * 180.02562 * 6 5 4 8 8 C 1.39423 * 120.08342 * 179.72412 * 7 6 5 9 9 C 1.38036 * 120.02276 * 179.71904 * 8 7 6 10 10 C 1.38219 * 120.20192 * 0.55306 * 9 8 7 11 11 C 1.50698 * 119.91416 * 179.69576 * 10 9 8 12 12 C 1.38968 * 120.17116 * 359.72525 * 10 9 8 13 13 N 1.39695 * 120.01379 * 179.97438 * 12 10 9 14 14 C 1.38721 * 119.97364 * 359.97438 * 12 10 9 15 15 C 1.38615 * 120.16270 * 359.97438 * 6 5 4 16 16 C 1.40524 * 119.68785 * 0.02562 * 15 6 5 17 17 C 1.41188 * 120.22865 * 179.97438 * 16 15 6 18 18 H 1.08000 * 119.99768 * 154.47436 * 17 16 15 19 19 C 1.39901 * 119.99872 * 334.47039 * 17 16 15 20 20 N 1.30868 * 120.00427 * 343.17193 * 19 17 16 21 21 Si 1.86801 * 119.99693 * 163.16923 * 19 17 16 22 22 H 1.48501 * 109.47122 * 90.00191 * 21 19 17 23 23 H 1.48507 * 109.47304 * 209.99974 * 21 19 17 24 24 H 1.48500 * 109.47344 * 329.99706 * 21 19 17 25 25 H 1.08997 * 109.47321 * 60.00455 * 1 2 3 26 26 H 1.09004 * 109.47017 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47490 * 299.99688 * 1 2 3 28 28 H 1.08000 * 119.84649 * 359.74388 * 4 3 2 29 29 H 1.08000 * 119.76186 * 179.97438 * 5 4 3 30 30 H 1.07994 * 119.98598 * 359.97438 * 8 7 6 31 31 H 1.07998 * 119.89896 * 180.25195 * 9 8 7 32 32 H 1.09004 * 109.47775 * 270.02576 * 11 10 9 33 33 H 1.09008 * 109.47083 * 30.02748 * 11 10 9 34 34 H 1.09004 * 109.47133 * 150.02368 * 11 10 9 35 35 H 0.97002 * 119.99791 * 180.02562 * 13 12 10 36 36 H 0.96997 * 120.00016 * 0.02562 * 13 12 10 37 37 H 1.07991 * 120.10117 * 179.97438 * 14 12 10 38 38 H 1.07999 * 120.15692 * 180.02562 * 15 6 5 39 39 H 0.97003 * 120.00814 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0446 1.2082 0.0000 4 6 1.2919 2.3710 0.0005 5 6 1.9137 3.6033 0.0000 6 6 3.3100 3.6935 -0.0005 7 6 3.9657 5.0246 -0.0005 8 6 5.3567 5.1185 0.0047 9 6 5.9653 6.3574 -0.0011 10 6 5.1998 7.5082 -0.0007 11 6 5.8710 8.8574 -0.0002 12 6 3.8126 7.4242 -0.0001 13 7 3.0420 8.5894 0.0009 14 6 3.1934 6.1829 -0.0005 15 6 4.0823 2.5424 0.0000 16 6 3.4563 1.2843 0.0005 17 6 4.2318 0.1045 0.0005 18 1 3.8232 -0.8103 0.4039 19 6 5.5294 0.1203 -0.5221 20 7 5.9110 1.1038 -1.2966 21 14 6.7174 -1.2624 -0.1145 22 1 6.5892 -2.3401 -1.1281 23 1 8.1072 -0.7391 -0.1215 24 1 6.4004 -1.8071 1.2301 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 0.2134 2.3132 -0.0032 29 1 1.3182 4.5043 0.0000 30 1 5.9582 4.2216 0.0092 31 1 7.0430 6.4278 -0.0011 32 1 6.0333 9.1822 1.0276 33 1 6.8295 8.7866 -0.5145 34 1 5.2358 9.5794 -0.5134 35 1 2.0738 8.5306 0.0017 36 1 3.4752 9.4573 0.0008 37 1 2.1156 6.1152 0.0004 38 1 5.1600 2.6121 0.0000 39 1 6.8108 1.1151 -1.6587 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240961802.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:06 Heat of formation + Delta-G solvation = -1.023438 kcal Electronic energy + Delta-G solvation = -21312.965596 eV Core-core repulsion = 18184.844264 eV Total energy + Delta-G solvation = -3128.121332 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.27847 -38.48448 -36.27182 -34.25666 -33.58138 -32.16550 -29.92747 -28.94081 -28.46126 -26.68056 -25.51882 -24.87853 -22.21663 -21.42304 -20.51304 -19.47931 -17.54506 -16.74705 -16.49385 -16.06651 -15.19796 -15.03489 -14.66757 -14.52455 -13.84672 -13.70945 -13.55572 -13.14711 -12.93802 -12.73039 -12.33102 -12.16433 -12.01019 -11.68369 -11.43936 -11.26416 -11.10324 -10.97572 -10.63134 -10.56879 -10.50966 -10.37561 -9.79031 -9.75020 -9.35544 -9.14157 -8.29119 -7.49007 -7.18421 -6.76413 -6.48890 -4.22514 1.66655 2.16521 2.80200 3.06065 3.12540 3.17176 3.25902 3.99992 4.13362 4.37983 4.50309 4.79867 5.23227 5.27950 5.53563 5.62479 5.69236 5.74840 5.77143 5.83216 5.91954 5.97767 6.01248 6.12071 6.16251 6.30575 6.38972 6.57255 6.75461 6.86923 7.02290 7.11304 7.19723 7.26808 7.41012 7.49133 7.67255 7.73942 7.87574 7.99932 8.04678 8.21639 8.39249 8.70704 8.86678 9.06278 10.25569 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.015223 B = 0.005366 C = 0.004020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1838.898325 B = 5216.370275 C = 6962.923646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.311 6.311 3 C 0.021 3.979 4 C -0.182 4.182 5 C -0.188 4.188 6 C -0.075 4.075 7 C 0.036 3.964 8 C -0.164 4.164 9 C -0.075 4.075 10 C -0.189 4.189 11 C -0.097 4.097 12 C 0.210 3.790 13 N -0.885 5.885 14 C -0.197 4.197 15 C -0.119 4.119 16 C 0.092 3.908 17 C -0.446 4.446 18 H 0.082 0.918 19 C 0.073 3.927 20 N -0.798 5.798 21 Si 0.908 3.092 22 H -0.271 1.271 23 H -0.277 1.277 24 H -0.261 1.261 25 H 0.040 0.960 26 H 0.081 0.919 27 H 0.039 0.961 28 H 0.097 0.903 29 H 0.094 0.906 30 H 0.127 0.873 31 H 0.114 0.886 32 H 0.057 0.943 33 H 0.060 0.940 34 H 0.052 0.948 35 H 0.393 0.607 36 H 0.392 0.608 37 H 0.118 0.882 38 H 0.134 0.866 39 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.370 9.673 1.810 10.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.225 6.225 3 C -0.023 4.023 4 C -0.201 4.201 5 C -0.207 4.207 6 C -0.075 4.075 7 C 0.035 3.965 8 C -0.184 4.184 9 C -0.093 4.093 10 C -0.194 4.194 11 C -0.154 4.154 12 C 0.108 3.892 13 N -0.427 5.427 14 C -0.220 4.220 15 C -0.139 4.139 16 C 0.090 3.910 17 C -0.476 4.476 18 H 0.100 0.900 19 C -0.143 4.143 20 N -0.424 5.424 21 Si 0.732 3.268 22 H -0.196 1.196 23 H -0.202 1.202 24 H -0.185 1.185 25 H 0.059 0.941 26 H 0.100 0.900 27 H 0.058 0.942 28 H 0.115 0.885 29 H 0.112 0.888 30 H 0.145 0.855 31 H 0.132 0.868 32 H 0.076 0.924 33 H 0.079 0.921 34 H 0.071 0.929 35 H 0.220 0.780 36 H 0.221 0.779 37 H 0.136 0.864 38 H 0.151 0.849 39 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -2.037 9.510 1.664 9.867 hybrid contribution -0.060 -0.106 -0.019 0.123 sum -2.097 9.403 1.645 9.774 Atomic orbital electron populations 1.22742 0.81734 1.01757 0.99946 1.85959 1.18235 1.28320 1.90005 1.19362 0.92430 0.82592 1.07954 1.20544 0.97415 0.92784 1.09360 1.20179 0.93171 0.95295 1.12102 1.18456 0.92800 0.91122 1.05126 1.18792 0.92577 0.92261 0.92883 1.21166 0.94306 0.97469 1.05457 1.20647 0.98662 0.91632 0.98382 1.19195 0.91496 0.95493 1.13185 1.20494 0.99841 0.93964 1.01055 1.17427 0.90117 0.86665 0.95039 1.42446 1.08091 1.05461 1.86673 1.20607 0.99372 0.90296 1.11698 1.21298 0.99718 0.89563 1.03297 1.16989 0.87274 0.93985 0.92790 1.19380 0.97027 0.96649 1.34540 0.89992 1.25865 0.98753 0.96927 0.92767 1.69823 1.19352 1.30754 1.22487 0.86320 0.79095 0.81195 0.80174 1.19593 1.20163 1.18506 0.94127 0.90017 0.94200 0.88457 0.88797 0.85538 0.86813 0.92436 0.92065 0.92941 0.77960 0.77946 0.86401 0.84891 0.90894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.59 9.81 101.05 0.99 1.58 16 2 O -0.31 -7.24 9.77 -18.49 -0.18 -7.42 16 3 C 0.02 0.53 6.72 -38.29 -0.26 0.27 16 4 C -0.18 -4.11 9.01 -39.55 -0.36 -4.46 16 5 C -0.19 -4.21 9.42 -39.03 -0.37 -4.58 16 6 C -0.07 -1.76 5.87 -104.95 -0.62 -2.38 16 7 C 0.04 0.75 5.87 -104.92 -0.62 0.13 16 8 C -0.16 -3.26 9.42 -39.21 -0.37 -3.63 16 9 C -0.07 -1.26 9.68 -39.66 -0.38 -1.64 16 10 C -0.19 -2.92 5.90 -104.36 -0.62 -3.54 16 11 C -0.10 -1.11 9.56 36.00 0.34 -0.77 16 12 C 0.21 3.32 6.73 -83.83 -0.56 2.75 16 13 N -0.89 -10.33 8.99 32.39 0.29 -10.04 16 14 C -0.20 -3.60 9.27 -39.04 -0.36 -3.96 16 15 C -0.12 -3.08 8.05 -38.58 -0.31 -3.39 16 16 C 0.09 2.49 5.57 -106.72 -0.59 1.90 16 17 C -0.45 -12.07 8.71 -37.84 -0.33 -12.40 16 18 H 0.08 2.20 7.65 -52.49 -0.40 1.80 16 19 C 0.07 1.86 5.15 -17.34 -0.09 1.77 16 20 N -0.80 -20.54 10.96 55.55 0.61 -19.93 16 21 Si 0.91 18.97 29.59 -169.99 -5.03 13.94 16 22 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 23 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 24 H -0.26 -5.44 7.11 56.52 0.40 -5.04 16 25 H 0.04 0.65 7.65 -51.93 -0.40 0.25 16 26 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 27 H 0.04 0.63 7.66 -51.93 -0.40 0.23 16 28 H 0.10 1.90 6.27 -52.49 -0.33 1.57 16 29 H 0.09 1.85 6.17 -52.49 -0.32 1.53 16 30 H 0.13 2.63 6.18 -52.49 -0.32 2.30 16 31 H 0.11 1.64 8.06 -52.49 -0.42 1.21 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.06 0.65 8.08 -51.92 -0.42 0.23 16 34 H 0.05 0.52 6.53 -51.93 -0.34 0.18 16 35 H 0.39 3.94 8.84 -40.82 -0.36 3.58 16 36 H 0.39 3.72 6.81 -40.82 -0.28 3.45 16 37 H 0.12 2.01 6.18 -52.49 -0.32 1.69 16 38 H 0.13 3.47 4.31 -52.49 -0.23 3.25 16 39 H 0.28 6.58 8.30 -40.82 -0.34 6.24 16 LS Contribution 320.35 15.07 4.83 4.83 Total: -1.00 -29.49 320.35 -8.51 -38.00 By element: Atomic # 1 Polarization: 17.50 SS G_CDS: -4.52 Total: 12.97 kcal Atomic # 6 Polarization: -27.85 SS G_CDS: -4.50 Total: -32.35 kcal Atomic # 7 Polarization: -30.87 SS G_CDS: 0.90 Total: -29.97 kcal Atomic # 8 Polarization: -7.24 SS G_CDS: -0.18 Total: -7.42 kcal Atomic # 14 Polarization: 18.97 SS G_CDS: -5.03 Total: 13.94 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -29.49 -8.51 -38.00 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240961802.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.972 kcal (2) G-P(sol) polarization free energy of solvation -29.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds