Wall clock time and date at job start Tue Mar 31 2020 05:40:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35611 * 117.00116 * 2 1 4 4 C 1.39148 * 119.88118 * 0.02728 * 3 2 1 5 5 C 1.36414 * 120.43930 * 179.97438 * 4 3 2 6 6 C 1.40903 * 120.18367 * 359.97438 * 5 4 3 7 7 C 1.41246 * 120.11861 * 179.97438 * 6 5 4 8 8 H 1.08000 * 119.99856 * 24.49409 * 7 6 5 9 9 C 1.39869 * 120.00433 * 204.49809 * 7 6 5 10 10 N 1.30888 * 119.99551 * 17.83050 * 9 7 6 11 11 Si 1.86793 * 120.00057 * 197.83244 * 9 7 6 12 12 H 1.48503 * 109.47090 * 0.02562 * 11 9 7 13 13 H 1.48499 * 109.47084 * 119.99695 * 11 9 7 14 14 H 1.48499 * 109.47189 * 239.99824 * 11 9 7 15 15 C 1.40620 * 119.76514 * 359.75060 * 6 5 4 16 16 C 1.38589 * 119.56992 * 0.50095 * 15 6 5 17 17 C 1.48340 * 120.09467 * 179.77472 * 16 15 6 18 18 C 1.39429 * 120.08678 * 129.74823 * 17 16 15 19 19 C 1.38037 * 120.02731 * 179.72233 * 18 17 16 20 20 C 1.38211 * 120.19949 * 0.50861 * 19 18 17 21 21 C 1.50704 * 119.91457 * 179.76669 * 20 19 18 22 22 C 1.38976 * 120.17609 * 359.48555 * 20 19 18 23 23 N 1.39688 * 120.01386 * 180.23573 * 22 20 19 24 24 C 1.38716 * 119.96808 * 0.25699 * 22 20 19 25 25 H 1.09000 * 109.47024 * 299.99459 * 1 2 3 26 26 H 1.09001 * 109.46871 * 59.99520 * 1 2 3 27 27 H 1.08995 * 109.47167 * 179.97438 * 1 2 3 28 28 H 1.08003 * 119.78239 * 359.97438 * 4 3 2 29 29 H 1.07994 * 119.90655 * 179.97438 * 5 4 3 30 30 H 0.97001 * 119.99696 * 179.97438 * 10 9 7 31 31 H 1.08000 * 120.21515 * 180.25428 * 15 6 5 32 32 H 1.08002 * 119.98542 * 359.95204 * 18 17 16 33 33 H 1.07998 * 119.90080 * 180.24801 * 19 18 17 34 34 H 1.09002 * 109.47155 * 269.72438 * 21 20 19 35 35 H 1.08996 * 109.46998 * 149.72179 * 21 20 19 36 36 H 1.09001 * 109.46690 * 29.72056 * 21 20 19 37 37 H 0.96999 * 120.00081 * 359.97438 * 23 22 20 38 38 H 0.97001 * 120.00025 * 180.02562 * 23 22 20 39 39 H 1.08004 * 120.09925 * 180.02562 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0447 1.2083 0.0000 4 6 1.2844 2.3737 0.0006 5 6 1.8919 3.5951 0.0011 6 6 3.2979 3.6871 0.0016 7 6 3.9255 4.9525 0.0016 8 1 3.4027 5.8145 0.3891 9 6 5.2239 5.0893 -0.5002 10 7 5.7273 4.1618 -1.2744 11 14 6.2393 6.5956 -0.0653 12 1 5.4473 7.4882 0.8186 13 1 7.4759 6.1723 0.6395 14 1 6.6022 7.3235 -1.3078 15 6 4.0742 2.5145 0.0069 16 6 3.4467 1.2789 0.0010 17 6 4.2542 0.0345 0.0014 18 6 3.9835 -0.9741 0.9253 19 6 4.7320 -2.1339 0.9209 20 6 5.7580 -2.2957 0.0091 21 6 6.5745 -3.5624 0.0134 22 6 6.0350 -1.2958 -0.9156 23 7 7.0696 -1.4650 -1.8388 24 6 5.2839 -0.1296 -0.9210 25 1 -0.3633 0.5137 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 0.2062 2.3109 0.0006 29 1 1.2935 4.4941 0.0011 30 1 6.6276 4.2568 -1.6227 31 1 5.1524 2.5766 0.0115 32 1 3.1855 -0.8494 1.6422 33 1 4.5180 -2.9155 1.6348 34 1 7.4319 -3.4397 0.6752 35 1 6.9231 -3.7734 -0.9975 36 1 5.9590 -4.3901 0.3657 37 1 7.5951 -2.2803 -1.8343 38 1 7.2630 -0.7669 -2.4838 39 1 5.4971 0.6486 -1.6389 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240962184.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:19 Heat of formation + Delta-G solvation = -3.034475 kcal Electronic energy + Delta-G solvation = -21607.134742 eV Core-core repulsion = 18478.926205 eV Total energy + Delta-G solvation = -3128.208537 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.30681 -38.38879 -36.32102 -34.29454 -33.28257 -32.38091 -29.65580 -29.10133 -28.31711 -26.82411 -25.74096 -24.55722 -22.02983 -21.32026 -20.57497 -19.68058 -17.41904 -16.83301 -16.54334 -15.85102 -15.26168 -14.93607 -14.69045 -14.62802 -13.82062 -13.60248 -13.57720 -13.15316 -12.93482 -12.62652 -12.30045 -12.13660 -12.00310 -11.82207 -11.51176 -11.24087 -11.04332 -10.88213 -10.74297 -10.61825 -10.48189 -10.18610 -9.86377 -9.76595 -9.38981 -9.01986 -8.23439 -7.38469 -7.04507 -6.87510 -6.66573 -4.24907 1.88183 2.25788 2.79016 2.94622 3.09818 3.14699 3.20755 3.96263 4.26843 4.35483 4.45572 4.68655 5.30318 5.34145 5.57167 5.65232 5.67276 5.72012 5.74662 5.80177 5.90588 5.97257 6.12207 6.19416 6.25775 6.40364 6.50077 6.69302 6.87493 6.96691 7.09864 7.14650 7.16535 7.35169 7.37311 7.54031 7.57680 7.77120 7.98343 8.00141 8.13553 8.19463 8.46096 8.63971 8.90073 8.96535 10.22764 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.013039 B = 0.006281 C = 0.004478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2146.950404 B = 4456.737729 C = 6251.717385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.321 6.321 3 C 0.015 3.985 4 C -0.171 4.171 5 C -0.188 4.188 6 C 0.084 3.916 7 C -0.463 4.463 8 H 0.077 0.923 9 C 0.076 3.924 10 N -0.798 5.798 11 Si 0.905 3.095 12 H -0.261 1.261 13 H -0.273 1.273 14 H -0.276 1.276 15 C -0.112 4.112 16 C -0.067 4.067 17 C 0.036 3.964 18 C -0.149 4.149 19 C -0.083 4.083 20 C -0.186 4.186 21 C -0.096 4.096 22 C 0.208 3.792 23 N -0.884 5.884 24 C -0.178 4.178 25 H 0.041 0.959 26 H 0.041 0.959 27 H 0.081 0.919 28 H 0.097 0.903 29 H 0.095 0.905 30 H 0.278 0.722 31 H 0.130 0.870 32 H 0.115 0.885 33 H 0.111 0.889 34 H 0.057 0.943 35 H 0.052 0.948 36 H 0.059 0.941 37 H 0.391 0.609 38 H 0.395 0.605 39 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.582 -9.787 0.659 9.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.236 6.236 3 C -0.029 4.029 4 C -0.190 4.190 5 C -0.208 4.208 6 C 0.082 3.918 7 C -0.493 4.493 8 H 0.095 0.905 9 C -0.141 4.141 10 N -0.425 5.425 11 Si 0.729 3.271 12 H -0.185 1.185 13 H -0.198 1.198 14 H -0.201 1.201 15 C -0.132 4.132 16 C -0.068 4.068 17 C 0.035 3.965 18 C -0.169 4.169 19 C -0.101 4.101 20 C -0.190 4.190 21 C -0.153 4.153 22 C 0.105 3.895 23 N -0.425 5.425 24 C -0.200 4.200 25 H 0.060 0.940 26 H 0.060 0.940 27 H 0.099 0.901 28 H 0.115 0.885 29 H 0.113 0.887 30 H 0.089 0.911 31 H 0.148 0.852 32 H 0.134 0.866 33 H 0.129 0.871 34 H 0.076 0.924 35 H 0.071 0.929 36 H 0.078 0.922 37 H 0.219 0.781 38 H 0.223 0.777 39 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 0.840 -10.013 0.552 10.063 hybrid contribution 0.429 0.928 -0.235 1.049 sum 1.269 -9.085 0.317 9.179 Atomic orbital electron populations 1.22716 0.81310 1.01692 1.00209 1.85911 1.18731 1.28171 1.90812 1.18534 0.90795 0.83058 1.10529 1.20354 0.97409 0.92874 1.08391 1.20623 0.94859 0.95108 1.10165 1.17511 0.90568 0.93359 0.90360 1.19454 0.98429 0.94941 1.36498 0.90513 1.25835 0.97957 0.97644 0.92643 1.69830 1.16115 1.33575 1.22942 0.86318 0.79885 0.81649 0.79203 1.18495 1.19781 1.20127 1.21345 0.99990 0.89165 1.02675 1.17953 0.88840 0.92459 1.07519 1.18579 0.92421 0.92815 0.92646 1.20921 1.01229 0.93843 1.00898 1.20570 0.94909 0.97153 0.97508 1.19183 1.02201 0.96927 1.00697 1.20492 0.98962 0.94993 1.00887 1.17447 0.88886 0.93494 0.89630 1.42453 1.37901 1.23254 1.38925 1.20766 0.98935 0.97198 1.03141 0.94002 0.94045 0.90066 0.88463 0.88659 0.91077 0.85225 0.86649 0.87067 0.92443 0.92903 0.92196 0.78071 0.77684 0.85757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.58 9.80 101.05 0.99 1.57 16 2 O -0.32 -6.62 8.81 -18.53 -0.16 -6.78 16 3 C 0.01 0.33 6.62 -38.44 -0.25 0.08 16 4 C -0.17 -3.85 8.95 -39.90 -0.36 -4.21 16 5 C -0.19 -4.56 9.72 -39.23 -0.38 -4.94 16 6 C 0.08 2.22 5.57 -106.85 -0.60 1.63 16 7 C -0.46 -12.17 9.04 -37.83 -0.34 -12.51 16 8 H 0.08 1.95 7.91 -52.49 -0.41 1.53 16 9 C 0.08 1.89 5.13 -17.34 -0.09 1.80 16 10 N -0.80 -20.29 10.96 55.54 0.61 -19.69 16 11 Si 0.90 18.66 29.59 -169.99 -5.03 13.63 16 12 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 13 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 14 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 15 C -0.11 -2.91 8.14 -38.55 -0.31 -3.22 16 16 C -0.07 -1.61 5.48 -104.81 -0.57 -2.18 16 17 C 0.04 0.79 5.27 -104.93 -0.55 0.23 16 18 C -0.15 -2.91 8.77 -39.21 -0.34 -3.25 16 19 C -0.08 -1.39 9.67 -39.66 -0.38 -1.77 16 20 C -0.19 -2.97 5.90 -104.36 -0.62 -3.59 16 21 C -0.10 -1.15 9.57 36.01 0.34 -0.81 16 22 C 0.21 3.57 6.73 -83.83 -0.56 3.01 16 23 N -0.88 -11.78 8.99 32.39 0.29 -11.49 16 24 C -0.18 -3.61 9.35 -39.04 -0.37 -3.98 16 25 H 0.04 0.61 7.65 -51.93 -0.40 0.22 16 26 H 0.04 0.63 7.65 -51.93 -0.40 0.23 16 27 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 28 H 0.10 1.89 6.26 -52.48 -0.33 1.56 16 29 H 0.10 2.16 8.06 -52.49 -0.42 1.74 16 30 H 0.28 6.46 8.30 -40.82 -0.34 6.12 16 31 H 0.13 3.48 6.15 -52.49 -0.32 3.15 16 32 H 0.12 2.23 7.68 -52.49 -0.40 1.83 16 33 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 34 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.05 0.55 6.53 -51.93 -0.34 0.22 16 36 H 0.06 0.64 8.08 -51.93 -0.42 0.22 16 37 H 0.39 4.22 6.81 -40.82 -0.28 3.94 16 38 H 0.40 4.89 8.84 -40.82 -0.36 4.53 16 39 H 0.12 2.64 8.04 -52.48 -0.42 2.21 16 LS Contribution 325.67 15.07 4.91 4.91 Total: -1.00 -28.73 325.67 -8.69 -37.42 By element: Atomic # 1 Polarization: 19.06 SS G_CDS: -4.91 Total: 14.15 kcal Atomic # 6 Polarization: -27.75 SS G_CDS: -4.40 Total: -32.15 kcal Atomic # 7 Polarization: -32.08 SS G_CDS: 0.90 Total: -31.18 kcal Atomic # 8 Polarization: -6.62 SS G_CDS: -0.16 Total: -6.78 kcal Atomic # 14 Polarization: 18.66 SS G_CDS: -5.03 Total: 13.63 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -28.73 -8.69 -37.42 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240962184.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.389 kcal (2) G-P(sol) polarization free energy of solvation -28.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds