Wall clock time and date at job start Tue Mar 31 2020 05:40:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38214 * 119.91132 * 2 1 4 4 C 1.38042 * 120.20001 * 179.97438 * 3 2 1 5 5 C 1.39422 * 120.02379 * 359.97438 * 4 3 2 6 6 C 1.48371 * 120.08170 * 179.97438 * 5 4 3 7 7 C 1.39379 * 120.06223 * 179.72395 * 6 5 4 8 8 C 1.37902 * 119.93473 * 179.72115 * 7 6 5 9 9 C 1.38833 * 120.06367 * 0.55196 * 8 7 6 10 10 O 1.35874 * 119.93908 * 179.74353 * 9 8 7 11 11 C 1.42899 * 116.99338 * 359.97438 * 10 9 8 12 12 C 1.50709 * 109.46837 * 179.97438 * 11 10 9 13 13 H 1.07996 * 119.99709 * 0.02562 * 12 11 10 14 14 C 1.37881 * 119.99601 * 180.02562 * 12 11 10 15 15 N 1.31517 * 119.99445 * 180.02562 * 14 12 11 16 16 Si 1.86797 * 120.00413 * 0.02562 * 14 12 11 17 17 H 1.48500 * 109.46908 * 89.99962 * 16 14 12 18 18 H 1.48494 * 109.47283 * 209.99639 * 16 14 12 19 19 H 1.48504 * 109.47008 * 330.00009 * 16 14 12 20 20 C 1.38832 * 120.12992 * 359.72637 * 9 8 7 21 21 C 1.37904 * 120.06663 * 359.97438 * 20 9 8 22 22 C 1.39208 * 119.83097 * 0.02562 * 5 4 3 23 23 C 1.38724 * 119.79885 * 359.74893 * 22 5 4 24 24 N 1.39684 * 120.01691 * 180.25718 * 23 22 5 25 25 H 1.09002 * 109.47152 * 90.00075 * 1 2 3 26 26 H 1.09001 * 109.46980 * 330.00175 * 1 2 3 27 27 H 1.09004 * 109.47113 * 210.00156 * 1 2 3 28 28 H 1.08000 * 119.90216 * 0.02562 * 3 2 1 29 29 H 1.07999 * 119.99049 * 179.97438 * 4 3 2 30 30 H 1.08000 * 120.02658 * 359.97438 * 7 6 5 31 31 H 1.07999 * 119.96776 * 180.27576 * 8 7 6 32 32 H 1.08996 * 109.47944 * 299.99688 * 11 10 9 33 33 H 1.09002 * 109.47489 * 60.00277 * 11 10 9 34 34 H 0.96996 * 120.00100 * 180.02562 * 15 14 12 35 35 H 1.08003 * 119.96902 * 179.97438 * 20 9 8 36 36 H 1.08002 * 120.03480 * 180.02562 * 21 20 9 37 37 H 1.07998 * 120.09969 * 180.02562 * 22 5 4 38 38 H 0.97000 * 120.00479 * 180.23056 * 24 23 22 39 39 H 0.97006 * 119.99918 * 0.22459 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1962 1.1980 0.0000 4 6 3.5766 1.2050 0.0005 5 6 4.2803 0.0014 0.0016 6 6 5.7640 0.0074 0.0016 7 6 6.4671 -1.1961 0.0085 8 6 7.8461 -1.1875 0.0027 9 6 8.5341 0.0183 0.0015 10 8 9.8928 0.0238 0.0010 11 6 10.5466 -1.2468 0.0023 12 6 12.0399 -1.0434 0.0009 13 1 12.4486 -0.0438 -0.0004 14 6 12.8840 -2.1336 0.0013 15 7 14.1872 -1.9561 0.0006 16 14 12.1769 -3.8626 0.0028 17 1 11.9889 -4.3217 -1.3969 18 1 13.1121 -4.7792 0.7029 19 1 10.8676 -3.8613 0.7035 20 6 7.8365 1.2187 0.0005 21 6 6.4575 1.2163 0.0001 22 6 3.5873 -1.2059 0.0016 23 6 2.2001 -1.2045 0.0058 24 7 1.5001 -2.4133 0.0113 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 0.8900 0.5138 27 1 -0.3633 -0.8900 0.5139 28 1 1.6532 2.1316 0.0004 29 1 4.1118 2.1431 0.0001 30 1 5.9323 -2.1344 0.0143 31 1 8.3914 -2.1198 0.0035 32 1 10.2563 -1.8040 0.8930 33 1 10.2556 -1.8061 -0.8869 34 1 14.7811 -2.7229 0.0005 35 1 8.3744 2.1552 0.0000 36 1 5.9153 2.1504 -0.0011 37 1 4.1280 -2.1408 0.0029 38 1 0.5301 -2.4122 0.0108 39 1 1.9841 -3.2540 0.0154 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240964173.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:21 Heat of formation + Delta-G solvation = 2.852269 kcal Electronic energy + Delta-G solvation = -20426.291035 eV Core-core repulsion = 17298.337767 eV Total energy + Delta-G solvation = -3127.953268 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.05826 -39.18006 -37.01798 -34.65298 -33.05904 -32.68975 -30.95655 -29.75990 -28.99288 -28.23496 -25.94648 -23.58439 -22.85334 -21.84963 -21.21668 -20.17756 -18.00050 -17.22944 -17.01197 -16.59749 -15.68851 -15.30877 -14.88574 -14.84041 -14.38271 -14.17651 -14.03296 -13.76227 -13.73844 -13.03310 -12.81824 -12.80825 -12.61070 -12.20651 -12.15162 -11.82352 -11.37842 -11.26984 -11.12814 -10.97695 -10.78126 -10.46840 -10.21647 -9.99649 -9.37375 -8.93493 -8.78498 -8.71212 -7.74571 -7.23718 -6.26129 -4.28243 0.89690 1.55481 1.64735 2.16667 3.15381 3.21968 3.22929 3.67385 3.74724 4.12838 4.22319 4.27686 4.68316 4.70007 4.95324 5.00689 5.04349 5.13431 5.15151 5.36576 5.38597 5.48323 5.52421 5.58378 5.73338 5.84468 5.94274 5.98313 6.19392 6.27528 6.31161 6.44736 6.47858 6.58252 6.69328 6.74278 6.82904 6.95682 7.09863 7.33850 7.35913 7.55394 7.96621 8.48466 8.83388 9.29615 10.86204 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.032172 B = 0.003068 C = 0.002806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.115343 B = 9124.849040 C = 9974.513939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.179 4.179 3 C -0.069 4.069 4 C -0.173 4.173 5 C 0.023 3.977 6 C -0.115 4.115 7 C -0.062 4.062 8 C -0.217 4.217 9 C 0.158 3.842 10 O -0.300 6.300 11 C 0.167 3.833 12 C -0.529 4.529 13 H 0.087 0.913 14 C 0.078 3.922 15 N -0.887 5.887 16 Si 0.873 3.127 17 H -0.271 1.271 18 H -0.279 1.279 19 H -0.265 1.265 20 C -0.166 4.166 21 C -0.064 4.064 22 C -0.196 4.196 23 C 0.219 3.781 24 N -0.881 5.881 25 H 0.062 0.938 26 H 0.064 0.936 27 H 0.055 0.945 28 H 0.119 0.881 29 H 0.122 0.878 30 H 0.121 0.879 31 H 0.130 0.870 32 H 0.020 0.980 33 H 0.015 0.985 34 H 0.270 0.730 35 H 0.131 0.869 36 H 0.127 0.873 37 H 0.122 0.878 38 H 0.396 0.604 39 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.287 1.422 0.023 27.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.183 4.183 3 C -0.088 4.088 4 C -0.193 4.193 5 C 0.023 3.977 6 C -0.115 4.115 7 C -0.080 4.080 8 C -0.236 4.236 9 C 0.109 3.891 10 O -0.212 6.212 11 C 0.093 3.907 12 C -0.567 4.567 13 H 0.105 0.895 14 C -0.125 4.125 15 N -0.525 5.525 16 Si 0.699 3.301 17 H -0.196 1.196 18 H -0.204 1.204 19 H -0.189 1.189 20 C -0.184 4.184 21 C -0.082 4.082 22 C -0.218 4.218 23 C 0.115 3.885 24 N -0.422 5.422 25 H 0.080 0.920 26 H 0.083 0.917 27 H 0.074 0.926 28 H 0.137 0.863 29 H 0.139 0.861 30 H 0.139 0.861 31 H 0.148 0.852 32 H 0.037 0.963 33 H 0.033 0.967 34 H 0.080 0.920 35 H 0.149 0.851 36 H 0.145 0.855 37 H 0.139 0.861 38 H 0.225 0.775 39 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -26.910 1.512 0.027 26.953 hybrid contribution -0.342 -1.639 -0.006 1.674 sum -27.252 -0.128 0.021 27.252 Atomic orbital electron populations 1.20555 0.91741 1.02006 1.01563 1.19319 0.95471 0.91897 1.11658 1.20670 0.93845 0.96618 0.97631 1.20962 0.93787 0.97376 1.07144 1.18480 0.91458 0.92593 0.95207 1.18524 0.91272 0.93426 1.08274 1.20942 0.93193 0.97208 0.96669 1.21325 0.94939 0.98005 1.09319 1.19430 0.84547 0.93628 0.91458 1.86166 1.13837 1.35562 1.85652 1.21031 0.93901 0.79874 0.95880 1.20775 0.86760 0.96464 1.52713 0.89524 1.24707 0.94654 0.98907 0.94263 1.69850 1.02116 1.31346 1.49138 0.86886 0.79626 0.84500 0.79048 1.19602 1.20408 1.18943 1.20386 0.93420 0.96679 1.07942 1.20936 0.92946 0.97226 0.97079 1.20593 0.91689 0.98156 1.11364 1.17447 0.90913 0.86066 0.94038 1.42531 1.08838 1.05135 1.85647 0.91957 0.91708 0.92581 0.86277 0.86052 0.86145 0.85225 0.96257 0.96723 0.92020 0.85132 0.85478 0.86063 0.77519 0.77559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.72 9.57 36.01 0.34 -0.37 16 2 C -0.18 -1.79 5.90 -104.36 -0.62 -2.41 16 3 C -0.07 -0.71 9.68 -39.66 -0.38 -1.09 16 4 C -0.17 -2.01 9.42 -39.21 -0.37 -2.38 16 5 C 0.02 0.31 5.87 -104.92 -0.62 -0.31 16 6 C -0.11 -1.68 5.88 -104.88 -0.62 -2.29 16 7 C -0.06 -0.95 9.42 -39.28 -0.37 -1.32 16 8 C -0.22 -3.88 9.02 -39.48 -0.36 -4.24 16 9 C 0.16 3.09 6.69 -39.14 -0.26 2.83 16 10 O -0.30 -7.05 10.12 -19.34 -0.20 -7.25 16 11 C 0.17 4.12 3.56 36.01 0.13 4.25 16 12 C -0.53 -15.32 9.99 -34.43 -0.34 -15.66 16 13 H 0.09 2.73 8.06 -52.49 -0.42 2.31 16 14 C 0.08 2.23 5.47 -17.82 -0.10 2.13 16 15 N -0.89 -26.65 13.96 55.43 0.77 -25.88 16 16 Si 0.87 20.60 27.47 -169.99 -4.67 15.93 16 17 H -0.27 -6.23 7.11 56.52 0.40 -5.82 16 18 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 19 H -0.26 -5.92 6.54 56.52 0.37 -5.55 16 20 C -0.17 -2.76 9.97 -39.48 -0.39 -3.15 16 21 C -0.06 -0.92 9.42 -39.28 -0.37 -1.29 16 22 C -0.20 -2.34 9.27 -39.04 -0.36 -2.71 16 23 C 0.22 2.31 6.73 -83.83 -0.56 1.74 16 24 N -0.88 -6.54 8.99 32.39 0.29 -6.25 16 25 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.06 0.40 8.08 -51.93 -0.42 -0.02 16 27 H 0.06 0.33 6.52 -51.93 -0.34 -0.01 16 28 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 29 H 0.12 1.23 6.19 -52.49 -0.33 0.91 16 30 H 0.12 1.54 6.20 -52.49 -0.33 1.21 16 31 H 0.13 2.33 6.28 -52.49 -0.33 2.00 16 32 H 0.02 0.47 6.72 -51.93 -0.35 0.12 16 33 H 0.02 0.36 7.08 -51.93 -0.37 -0.01 16 34 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 35 H 0.13 1.99 8.06 -52.48 -0.42 1.57 16 36 H 0.13 1.45 6.19 -52.49 -0.33 1.12 16 37 H 0.12 1.33 6.20 -52.49 -0.33 1.00 16 38 H 0.40 2.22 6.80 -40.82 -0.28 1.94 16 39 H 0.40 2.41 8.84 -40.82 -0.36 2.05 16 LS Contribution 322.87 15.07 4.87 4.87 Total: -1.00 -31.65 322.87 -8.78 -40.44 By element: Atomic # 1 Polarization: 9.01 SS G_CDS: -4.60 Total: 4.41 kcal Atomic # 6 Polarization: -21.02 SS G_CDS: -5.25 Total: -26.27 kcal Atomic # 7 Polarization: -33.19 SS G_CDS: 1.06 Total: -32.13 kcal Atomic # 8 Polarization: -7.05 SS G_CDS: -0.20 Total: -7.25 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -4.67 Total: 15.93 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -31.65 -8.78 -40.44 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240964173.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.291 kcal (2) G-P(sol) polarization free energy of solvation -31.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.439 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds