Wall clock time and date at job start Tue Mar 31 2020 05:42:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35832 * 116.99751 * 2 1 4 4 C 1.38879 * 119.92863 * 90.00371 * 3 2 1 5 5 C 1.50707 * 119.96709 * 0.02562 * 4 3 2 6 6 C 1.37853 * 120.07280 * 179.97438 * 4 3 2 7 7 C 1.39463 * 119.92536 * 0.02562 * 6 4 3 8 8 C 1.48227 * 120.07055 * 179.97438 * 7 6 4 9 9 C 1.39955 * 119.61427 * 169.12278 * 8 7 6 10 10 C 1.38666 * 119.46337 * 180.02562 * 9 8 7 11 11 C 1.38315 * 118.69149 * 0.27346 * 10 9 8 12 12 C 1.40678 * 119.19961 * 359.44421 * 11 10 9 13 13 C 1.41359 * 119.76603 * 180.29580 * 12 11 10 14 14 H 1.07995 * 120.00109 * 8.36896 * 13 12 11 15 15 C 1.40014 * 119.99937 * 188.36801 * 13 12 11 16 16 N 1.30749 * 119.99601 * 8.06465 * 15 13 12 17 17 Si 1.86796 * 120.00074 * 188.06300 * 15 13 12 18 18 H 1.48502 * 109.47213 * 84.98382 * 17 15 13 19 19 H 1.48495 * 109.47224 * 204.98588 * 17 15 13 20 20 H 1.48495 * 109.47237 * 324.98493 * 17 15 13 21 21 N 1.32254 * 119.60994 * 349.10534 * 8 7 6 22 22 C 1.39470 * 119.86441 * 0.25567 * 7 6 4 23 23 C 1.37851 * 119.92318 * 359.49044 * 22 7 6 24 24 C 1.50699 * 119.96059 * 180.25114 * 23 22 7 25 25 H 1.09005 * 109.46492 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47223 * 299.99459 * 1 2 3 27 27 H 1.08992 * 109.47376 * 60.00115 * 1 2 3 28 28 H 1.09000 * 109.46788 * 269.98111 * 5 4 3 29 29 H 1.08998 * 109.46902 * 29.97691 * 5 4 3 30 30 H 1.08998 * 109.46930 * 149.97840 * 5 4 3 31 31 H 1.07999 * 120.03779 * 180.02562 * 6 4 3 32 32 H 1.08003 * 120.27063 * 359.97438 * 9 8 7 33 33 H 1.07997 * 120.65414 * 180.02562 * 10 9 8 34 34 H 1.08004 * 120.39534 * 179.72743 * 11 10 9 35 35 H 0.97001 * 119.99532 * 179.97438 * 16 15 13 36 36 H 1.08000 * 120.03446 * 179.72237 * 22 7 6 37 37 H 1.09003 * 109.47467 * 270.23688 * 24 23 22 38 38 H 1.09006 * 109.47279 * 30.23523 * 24 23 22 39 39 H 1.09002 * 109.47079 * 150.23422 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0456 1.2103 0.0000 4 6 2.3602 1.8276 1.2036 5 6 2.0176 1.1538 2.5074 6 6 2.9864 3.0557 1.2071 7 6 3.3036 3.6784 0.0001 8 6 3.9765 4.9991 0.0001 9 6 4.4949 5.5111 -1.1948 10 6 5.1242 6.7468 -1.1911 11 6 5.2255 7.4368 0.0033 12 6 4.6793 6.8725 1.1704 13 6 4.7705 7.5703 2.3964 14 1 5.1346 8.5869 2.4133 15 6 4.3887 6.9434 3.5887 16 7 4.0988 5.6685 3.5932 17 14 4.2937 7.9286 5.1729 18 1 2.9686 8.5928 5.2641 19 1 4.4722 7.0189 6.3330 20 1 5.3646 8.9572 5.1812 21 7 4.0795 5.6800 1.1292 22 6 2.9810 3.0585 -1.2069 23 6 2.3595 1.8281 -1.2035 24 6 2.0157 1.1550 -2.5073 25 1 -0.3632 -1.0278 0.0005 26 1 -0.3634 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 1.0193 1.4578 2.8221 29 1 2.0432 0.0722 2.3750 30 1 2.7426 1.4441 3.2678 31 1 3.2312 3.5351 2.1434 32 1 4.4063 4.9481 -2.1122 33 1 5.5309 7.1603 -2.1022 34 1 5.7141 8.3994 0.0385 35 1 3.8347 5.2342 4.4194 36 1 3.2213 3.5403 -2.1432 37 1 1.0172 1.4593 -2.8211 38 1 2.7400 1.4455 -3.2683 39 1 2.0413 0.0733 -2.3755 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241015744.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:24 Heat of formation + Delta-G solvation = 5.763676 kcal Electronic energy + Delta-G solvation = -21561.049631 eV Core-core repulsion = 18433.222611 eV Total energy + Delta-G solvation = -3127.827020 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.87769 -38.29146 -36.71432 -33.73012 -33.24600 -31.85532 -30.50674 -29.02812 -27.81306 -26.49825 -25.92677 -25.22484 -22.62170 -21.53782 -20.24736 -19.76637 -17.47229 -17.29695 -16.03428 -15.58671 -15.43526 -14.81164 -14.46299 -14.10241 -13.55752 -13.43416 -13.31582 -13.23176 -12.94882 -12.53564 -12.45002 -12.40929 -12.14988 -11.84035 -11.61694 -11.34150 -11.13277 -11.02246 -10.97279 -10.74004 -10.72583 -10.46587 -9.97490 -9.62028 -9.40684 -8.62344 -8.11943 -8.06279 -7.65652 -7.18345 -6.53646 -4.55450 1.38988 1.86689 2.74118 2.97138 3.06469 3.08808 3.17086 3.88427 3.91215 4.34034 4.77402 5.10733 5.14661 5.29322 5.34358 5.37150 5.57443 5.66106 5.73705 5.79089 5.85144 5.87160 5.89719 5.98858 6.05459 6.11856 6.20606 6.40608 6.43997 6.55717 6.66946 6.74183 6.85012 6.96428 7.08616 7.22732 7.29173 7.38809 7.54561 7.67914 7.85876 7.98325 8.18164 8.61598 8.85811 9.98161 10.24734 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.017948 B = 0.005262 C = 0.004148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1559.656655 B = 5319.682192 C = 6749.131915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.335 6.335 3 C 0.076 3.924 4 C -0.111 4.111 5 C -0.106 4.106 6 C -0.073 4.073 7 C -0.013 4.013 8 C 0.175 3.825 9 C -0.299 4.299 10 C -0.059 4.059 11 C -0.272 4.272 12 C 0.260 3.740 13 C -0.435 4.435 14 H 0.084 0.916 15 C 0.075 3.925 16 N -0.722 5.722 17 Si 0.908 3.092 18 H -0.268 1.268 19 H -0.277 1.277 20 H -0.262 1.262 21 N -0.470 5.470 22 C -0.105 4.105 23 C -0.112 4.112 24 C -0.105 4.105 25 H 0.087 0.913 26 H 0.043 0.957 27 H 0.042 0.958 28 H 0.062 0.938 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.156 0.844 32 H 0.098 0.902 33 H 0.098 0.902 34 H 0.100 0.900 35 H 0.274 0.726 36 H 0.126 0.874 37 H 0.061 0.939 38 H 0.064 0.936 39 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.797 -8.234 -4.125 10.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.252 6.252 3 C 0.033 3.967 4 C -0.112 4.112 5 C -0.163 4.163 6 C -0.091 4.091 7 C -0.014 4.014 8 C 0.030 3.970 9 C -0.322 4.322 10 C -0.083 4.083 11 C -0.295 4.295 12 C 0.135 3.865 13 C -0.466 4.466 14 H 0.102 0.898 15 C -0.150 4.150 16 N -0.344 5.344 17 Si 0.732 3.268 18 H -0.193 1.193 19 H -0.202 1.202 20 H -0.187 1.187 21 N -0.183 5.183 22 C -0.124 4.124 23 C -0.113 4.113 24 C -0.162 4.162 25 H 0.105 0.895 26 H 0.062 0.938 27 H 0.061 0.939 28 H 0.080 0.920 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.174 0.826 32 H 0.116 0.884 33 H 0.116 0.884 34 H 0.118 0.882 35 H 0.085 0.915 36 H 0.144 0.856 37 H 0.080 0.920 38 H 0.083 0.917 39 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -6.090 -8.886 -3.169 11.229 hybrid contribution 0.196 1.066 -0.189 1.100 sum -5.894 -7.820 -3.358 10.352 Atomic orbital electron populations 1.22904 0.80064 1.02344 1.00534 1.85926 1.19108 1.25773 1.94381 1.18327 1.00051 0.86653 0.91696 1.20130 1.01198 0.95251 0.94585 1.20633 1.01438 1.00123 0.94067 1.21520 0.95102 0.92473 1.00037 1.18870 0.96677 0.93313 0.92564 1.19679 0.94591 0.92478 0.90221 1.21209 1.13707 0.99601 0.97676 1.20794 0.96653 0.94307 0.96579 1.21808 1.10865 1.02361 0.94428 1.18485 0.87720 0.88193 0.92153 1.19561 1.37161 0.99836 0.90043 0.89768 1.25992 0.93424 0.94817 1.00777 1.69994 1.26772 1.09699 1.27893 0.86344 0.79753 0.80344 0.80390 1.19301 1.20172 1.18656 1.68642 1.18364 1.07705 1.23579 1.21009 0.99356 0.94033 0.97983 1.19895 1.01794 0.95004 0.94603 1.20617 1.01115 1.00569 0.93853 0.89461 0.93797 0.93922 0.91974 0.91565 0.91279 0.82633 0.88414 0.88432 0.88216 0.91482 0.85629 0.92024 0.91750 0.91353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.41 11.13 101.05 1.12 1.53 16 2 O -0.33 -5.00 8.48 -19.21 -0.16 -5.16 16 3 C 0.08 1.29 5.67 -39.11 -0.22 1.07 16 4 C -0.11 -2.00 5.89 -104.52 -0.62 -2.62 16 5 C -0.11 -1.59 9.79 36.01 0.35 -1.23 16 6 C -0.07 -1.52 9.21 -39.27 -0.36 -1.89 16 7 C -0.01 -0.29 5.86 -104.88 -0.62 -0.90 16 8 C 0.17 4.28 6.70 -82.94 -0.56 3.72 16 9 C -0.30 -6.75 9.45 -38.78 -0.37 -7.12 16 10 C -0.06 -1.33 10.15 -39.40 -0.40 -1.73 16 11 C -0.27 -6.64 9.83 -38.63 -0.38 -7.02 16 12 C 0.26 7.04 6.51 -85.01 -0.55 6.48 16 13 C -0.43 -11.43 9.13 -37.73 -0.34 -11.78 16 14 H 0.08 2.07 7.86 -52.49 -0.41 1.66 16 15 C 0.08 1.86 5.46 -17.35 -0.09 1.77 16 16 N -0.72 -18.44 11.47 55.55 0.64 -17.80 16 17 Si 0.91 18.27 29.57 -169.99 -5.03 13.24 16 18 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 19 H -0.28 -5.44 7.11 56.52 0.40 -5.03 16 20 H -0.26 -5.20 7.11 56.52 0.40 -4.80 16 21 N -0.47 -12.70 7.11 -7.69 -0.05 -12.76 16 22 C -0.10 -1.92 9.03 -39.26 -0.35 -2.28 16 23 C -0.11 -1.86 5.89 -104.53 -0.62 -2.48 16 24 C -0.10 -1.35 9.78 36.01 0.35 -0.99 16 25 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.07 0.92 7.52 -51.93 -0.39 0.53 16 30 H 0.07 1.02 8.08 -51.93 -0.42 0.61 16 31 H 0.16 3.59 7.45 -52.49 -0.39 3.20 16 32 H 0.10 1.93 6.32 -52.48 -0.33 1.60 16 33 H 0.10 1.84 8.06 -52.49 -0.42 1.42 16 34 H 0.10 2.24 8.06 -52.48 -0.42 1.81 16 35 H 0.27 6.34 8.29 -40.82 -0.34 6.00 16 36 H 0.13 2.11 6.31 -52.49 -0.33 1.78 16 37 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 38 H 0.06 0.75 8.09 -51.93 -0.42 0.33 16 39 H 0.07 0.85 7.52 -51.93 -0.39 0.45 16 LS Contribution 331.70 15.07 5.00 5.00 Total: -1.00 -28.79 331.70 -8.44 -37.23 By element: Atomic # 1 Polarization: 10.89 SS G_CDS: -5.18 Total: 5.71 kcal Atomic # 6 Polarization: -21.81 SS G_CDS: -3.65 Total: -25.46 kcal Atomic # 7 Polarization: -31.14 SS G_CDS: 0.58 Total: -30.56 kcal Atomic # 8 Polarization: -5.00 SS G_CDS: -0.16 Total: -5.16 kcal Atomic # 14 Polarization: 18.27 SS G_CDS: -5.03 Total: 13.24 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -28.79 -8.44 -37.23 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241015744.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.996 kcal (2) G-P(sol) polarization free energy of solvation -28.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.232 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds