Wall clock time and date at job start Tue Mar 31 2020 05:42:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35789 * 117.00038 * 2 1 4 4 C 1.38968 * 119.91645 * 269.72340 * 3 2 1 5 5 C 1.50702 * 119.95794 * 359.97438 * 4 3 2 6 6 C 1.37755 * 120.08922 * 179.72193 * 4 3 2 7 7 C 1.39710 * 119.90793 * 0.55529 * 6 4 3 8 8 C 1.47849 * 120.08489 * 179.74567 * 7 6 4 9 9 C 1.39968 * 119.45814 * 359.97438 * 8 7 6 10 10 C 1.36551 * 119.46598 * 180.02562 * 9 8 7 11 11 C 1.41333 * 118.42161 * 359.97438 * 10 9 8 12 12 C 1.41023 * 120.54806 * 179.97438 * 11 10 9 13 13 H 1.08001 * 120.00184 * 330.33988 * 12 11 10 14 14 C 1.39991 * 119.99984 * 150.32988 * 12 11 10 15 15 N 1.30814 * 120.00459 * 161.80755 * 14 12 11 16 16 Si 1.86807 * 119.99810 * 341.80993 * 14 12 11 17 17 H 1.48504 * 109.46909 * 95.40968 * 16 14 12 18 18 H 1.48496 * 109.47195 * 215.40556 * 16 14 12 19 19 H 1.48496 * 109.47175 * 335.40881 * 16 14 12 20 20 C 1.40948 * 118.89925 * 0.02562 * 11 10 9 21 21 N 1.31254 * 120.40992 * 359.71665 * 20 11 10 22 22 C 1.39709 * 119.82985 * 359.72189 * 7 6 4 23 23 C 1.37753 * 119.90725 * 0.02562 * 22 7 6 24 24 C 1.50697 * 119.95616 * 180.02562 * 23 22 7 25 25 H 1.08997 * 109.47139 * 300.00001 * 1 2 3 26 26 H 1.09007 * 109.46983 * 59.99606 * 1 2 3 27 27 H 1.08995 * 109.47370 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47253 * 89.99319 * 5 4 3 29 29 H 1.08990 * 109.47676 * 209.99966 * 5 4 3 30 30 H 1.09001 * 109.46432 * 329.99957 * 5 4 3 31 31 H 1.07999 * 120.04285 * 180.25731 * 6 4 3 32 32 H 1.08003 * 120.26400 * 0.02562 * 9 8 7 33 33 H 1.08000 * 120.79194 * 180.02562 * 10 9 8 34 34 H 0.96991 * 120.00062 * 180.02562 * 15 14 12 35 35 H 1.08006 * 119.79691 * 180.02562 * 20 11 10 36 36 H 1.08000 * 120.05057 * 179.97438 * 22 7 6 37 37 H 1.09001 * 109.46992 * 269.97553 * 24 23 22 38 38 H 1.08998 * 109.47009 * 29.97750 * 24 23 22 39 39 H 1.09004 * 109.47393 * 149.98031 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0455 1.2099 0.0000 4 6 2.3653 1.8248 -1.2045 5 6 2.0280 1.1477 -2.5079 6 6 2.9856 3.0548 -1.2087 7 6 3.3035 3.6787 0.0002 8 6 3.9743 4.9963 0.0003 9 6 4.2869 5.6096 -1.2184 10 6 4.9069 6.8263 -1.2185 11 6 5.2118 7.4260 0.0244 12 6 5.8522 8.6814 0.0766 13 1 6.5238 8.9783 -0.7153 14 6 5.6171 9.5428 1.1548 15 7 6.4465 10.5238 1.4012 16 14 4.1188 9.2911 2.2417 17 1 4.5005 8.4916 3.4335 18 1 3.5963 10.6110 2.6779 19 1 3.0685 8.5708 1.4780 20 6 4.8664 6.7480 1.2108 21 7 4.2664 5.5818 1.1590 22 6 2.9855 3.0547 1.2091 23 6 2.3606 1.8271 1.2047 24 6 2.0166 1.1532 2.5080 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.0309 1.4506 -2.8273 29 1 2.7557 1.4363 -3.2663 30 1 2.0535 0.0664 -2.3728 31 1 3.2300 3.5339 -2.1452 32 1 4.0396 5.1245 -2.1511 33 1 5.1575 7.3190 -2.1463 34 1 6.2838 11.1204 2.1485 35 1 5.0923 7.1932 2.1686 36 1 3.2301 3.5336 2.1457 37 1 2.8493 0.5242 2.8227 38 1 1.8250 1.9099 3.2688 39 1 1.1266 0.5380 2.3752 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241016005.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:29 Heat of formation + Delta-G solvation = -2.737683 kcal Electronic energy + Delta-G solvation = -21185.452125 eV Core-core repulsion = 18057.256458 eV Total energy + Delta-G solvation = -3128.195667 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.99721 -38.73037 -36.88570 -34.19428 -33.41762 -32.06032 -31.34370 -29.64943 -27.95727 -26.45101 -26.36868 -24.95123 -22.50336 -22.12183 -20.45343 -20.02764 -17.90761 -17.38860 -16.40005 -16.05683 -15.52912 -15.33039 -14.62734 -14.18222 -13.70765 -13.63533 -13.49185 -13.21288 -13.04034 -13.00265 -12.84442 -12.61314 -12.43613 -12.11300 -11.84984 -11.78298 -11.41276 -11.17355 -11.09580 -11.05784 -10.72713 -10.60822 -10.16304 -9.73083 -9.56374 -8.75160 -8.57341 -8.28244 -8.26700 -7.36746 -7.28476 -4.73825 1.24196 1.71564 2.42067 2.54975 2.97726 3.07409 3.15609 3.72065 3.76261 4.14475 4.48625 4.97912 5.01054 5.13545 5.24325 5.27466 5.30771 5.46349 5.54132 5.58240 5.66039 5.68036 5.76726 5.78742 5.87225 5.92458 6.05037 6.15917 6.17734 6.25751 6.44815 6.52210 6.63861 6.76099 6.83257 6.98213 7.02990 7.10463 7.33106 7.43590 7.73279 7.78805 7.95017 8.25245 8.38850 9.26520 9.70589 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.029458 B = 0.004006 C = 0.003661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 950.281956 B = 6987.861221 C = 7646.616218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.333 6.333 3 C 0.056 3.944 4 C -0.095 4.095 5 C -0.107 4.107 6 C -0.128 4.128 7 C 0.023 3.977 8 C -0.010 4.010 9 C -0.102 4.102 10 C -0.184 4.184 11 C 0.046 3.954 12 C -0.413 4.413 13 H 0.098 0.902 14 C 0.081 3.919 15 N -0.783 5.783 16 Si 0.912 3.088 17 H -0.261 1.261 18 H -0.284 1.284 19 H -0.245 1.245 20 C -0.026 4.026 21 N -0.434 5.434 22 C -0.106 4.106 23 C -0.097 4.097 24 C -0.106 4.106 25 H 0.043 0.957 26 H 0.042 0.958 27 H 0.087 0.913 28 H 0.062 0.938 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.125 0.875 32 H 0.108 0.892 33 H 0.112 0.888 34 H 0.293 0.707 35 H 0.133 0.867 36 H 0.133 0.867 37 H 0.068 0.932 38 H 0.064 0.936 39 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.351 -12.775 -1.932 15.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.250 6.250 3 C 0.013 3.987 4 C -0.095 4.095 5 C -0.164 4.164 6 C -0.147 4.147 7 C 0.023 3.977 8 C -0.143 4.143 9 C -0.121 4.121 10 C -0.209 4.209 11 C 0.041 3.959 12 C -0.441 4.441 13 H 0.116 0.884 14 C -0.142 4.142 15 N -0.405 5.405 16 Si 0.737 3.263 17 H -0.187 1.187 18 H -0.210 1.210 19 H -0.168 1.168 20 C -0.191 4.191 21 N -0.142 5.142 22 C -0.125 4.125 23 C -0.097 4.097 24 C -0.162 4.162 25 H 0.061 0.939 26 H 0.061 0.939 27 H 0.105 0.895 28 H 0.081 0.919 29 H 0.083 0.917 30 H 0.087 0.913 31 H 0.142 0.858 32 H 0.126 0.874 33 H 0.130 0.870 34 H 0.103 0.897 35 H 0.150 0.850 36 H 0.151 0.849 37 H 0.087 0.913 38 H 0.083 0.917 39 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -9.366 -13.119 -1.078 16.155 hybrid contribution -0.353 0.868 -0.305 0.986 sum -9.719 -12.251 -1.383 15.699 Atomic orbital electron populations 1.22927 0.80367 1.02353 1.00456 1.85970 1.18944 1.25684 1.94355 1.18249 1.01561 0.87357 0.91564 1.19906 1.00379 0.94652 0.94588 1.20645 1.01239 1.00648 0.93870 1.20927 1.01550 0.94513 0.97746 1.18649 0.94378 0.92267 0.92456 1.18776 1.10685 0.95964 0.88919 1.21287 0.98163 0.95487 0.97211 1.21033 1.05366 0.97161 0.97343 1.18699 0.90627 0.94213 0.92379 1.19582 1.20690 0.98192 1.05631 0.88425 1.26314 0.97558 0.93940 0.96349 1.69659 1.32563 1.12840 1.25388 0.86295 0.81949 0.77730 0.80346 1.18661 1.21042 1.16798 1.22461 1.06624 0.92826 0.97225 1.66928 1.08161 1.10184 1.28892 1.21045 0.99024 0.93710 0.98727 1.20040 1.00262 0.94846 0.94587 1.20648 1.01567 1.00049 0.93950 0.93865 0.93926 0.89464 0.91896 0.91651 0.91269 0.85764 0.87382 0.86976 0.89651 0.84991 0.84917 0.91302 0.91742 0.91987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 10.75 101.05 1.09 1.43 16 2 O -0.33 -4.61 8.65 -19.08 -0.17 -4.78 16 3 C 0.06 0.88 5.68 -39.04 -0.22 0.66 16 4 C -0.09 -1.45 5.89 -104.53 -0.62 -2.07 16 5 C -0.11 -1.28 9.78 36.01 0.35 -0.93 16 6 C -0.13 -2.16 9.06 -39.21 -0.36 -2.51 16 7 C 0.02 0.45 5.88 -104.87 -0.62 -0.16 16 8 C -0.01 -0.23 6.74 -82.75 -0.56 -0.78 16 9 C -0.10 -2.12 9.38 -39.54 -0.37 -2.49 16 10 C -0.18 -4.10 9.87 -39.01 -0.39 -4.49 16 11 C 0.05 1.13 5.12 -106.64 -0.55 0.58 16 12 C -0.41 -10.41 9.58 -37.87 -0.36 -10.77 16 13 H 0.10 2.53 8.06 -52.49 -0.42 2.11 16 14 C 0.08 1.97 5.41 -17.33 -0.09 1.88 16 15 N -0.78 -19.22 13.93 55.55 0.77 -18.44 16 16 Si 0.91 19.69 24.52 -169.99 -4.17 15.53 16 17 H -0.26 -5.51 6.71 56.52 0.38 -5.13 16 18 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 19 H -0.24 -5.61 6.86 56.52 0.39 -5.22 16 20 C -0.03 -0.63 8.37 -16.77 -0.14 -0.77 16 21 N -0.43 -10.38 9.38 -9.11 -0.09 -10.46 16 22 C -0.11 -1.95 9.21 -39.21 -0.36 -2.31 16 23 C -0.10 -1.56 5.89 -104.52 -0.62 -2.17 16 24 C -0.11 -1.37 9.78 36.00 0.35 -1.02 16 25 H 0.04 0.43 7.25 -51.93 -0.38 0.05 16 26 H 0.04 0.41 8.14 -51.92 -0.42 -0.01 16 27 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 28 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 29 H 0.06 0.71 8.08 -51.93 -0.42 0.29 16 30 H 0.07 0.80 7.52 -51.93 -0.39 0.41 16 31 H 0.12 1.89 6.14 -52.49 -0.32 1.56 16 32 H 0.11 1.89 6.14 -52.48 -0.32 1.57 16 33 H 0.11 2.27 8.06 -52.49 -0.42 1.84 16 34 H 0.29 6.44 8.30 -40.82 -0.34 6.10 16 35 H 0.13 3.15 4.72 -52.48 -0.25 2.91 16 36 H 0.13 2.49 7.52 -52.49 -0.39 2.10 16 37 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.06 0.78 8.08 -51.93 -0.42 0.36 16 39 H 0.06 0.72 6.30 -51.93 -0.33 0.40 16 LS Contribution 322.28 15.07 4.86 4.86 Total: -1.00 -27.21 322.28 -7.17 -34.38 By element: Atomic # 1 Polarization: 9.77 SS G_CDS: -4.93 Total: 4.84 kcal Atomic # 6 Polarization: -22.47 SS G_CDS: -3.45 Total: -25.92 kcal Atomic # 7 Polarization: -29.59 SS G_CDS: 0.69 Total: -28.90 kcal Atomic # 8 Polarization: -4.61 SS G_CDS: -0.17 Total: -4.78 kcal Atomic # 14 Polarization: 19.69 SS G_CDS: -4.17 Total: 15.53 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -27.21 -7.17 -34.38 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241016005.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.643 kcal (2) G-P(sol) polarization free energy of solvation -27.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds