Wall clock time and date at job start Tue Mar 31 2020 05:42:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35874 * 116.99964 * 2 1 4 4 C 1.38841 * 119.93080 * 89.99913 * 3 2 1 5 5 C 1.50696 * 119.96947 * 359.97438 * 4 3 2 6 6 C 1.37908 * 120.05916 * 180.02562 * 4 3 2 7 7 C 1.39366 * 119.93805 * 0.22791 * 6 4 3 8 8 C 1.48382 * 120.06357 * 179.75153 * 7 6 4 9 9 C 1.39726 * 120.41401 * 0.02562 * 8 7 6 10 10 N 1.31907 * 121.15169 * 180.02562 * 9 8 7 11 11 C 1.31527 * 122.11862 * 359.97292 * 10 9 8 12 12 C 1.40769 * 120.66884 * 359.97438 * 11 10 9 13 13 C 1.41439 * 120.60253 * 180.02562 * 12 11 10 14 14 H 1.08001 * 120.00273 * 23.41774 * 13 12 11 15 15 C 1.39935 * 120.00119 * 203.40847 * 13 12 11 16 16 N 1.30830 * 119.99996 * 17.41377 * 15 13 12 17 17 Si 1.86802 * 120.00260 * 197.40917 * 15 13 12 18 18 H 1.48497 * 109.47091 * 90.00280 * 17 15 13 19 19 H 1.48494 * 109.47437 * 210.00544 * 17 15 13 20 20 H 1.48500 * 109.47006 * 330.00602 * 17 15 13 21 21 C 1.39153 * 120.41012 * 179.72503 * 8 7 6 22 22 C 1.39372 * 119.87104 * 359.49927 * 7 6 4 23 23 C 1.37905 * 119.93612 * 0.52406 * 22 7 6 24 24 C 1.50701 * 119.96959 * 179.74882 * 23 22 7 25 25 H 1.08995 * 109.47442 * 60.00057 * 1 2 3 26 26 H 1.09012 * 109.46806 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47415 * 299.99538 * 1 2 3 28 28 H 1.09001 * 109.47001 * 270.02147 * 5 4 3 29 29 H 1.08997 * 109.47122 * 30.02129 * 5 4 3 30 30 H 1.09000 * 109.46900 * 150.02428 * 5 4 3 31 31 H 1.08004 * 120.03098 * 179.97438 * 6 4 3 32 32 H 1.08003 * 119.42434 * 359.97438 * 9 8 7 33 33 H 1.08005 * 119.66276 * 180.02562 * 11 10 9 34 34 H 0.96994 * 120.00277 * 179.97438 * 16 15 13 35 35 H 1.07999 * 120.95500 * 359.97438 * 21 8 7 36 36 H 1.08004 * 120.03260 * 180.22809 * 22 7 6 37 37 H 1.09003 * 109.46782 * 269.97920 * 24 23 22 38 38 H 1.08990 * 109.46832 * 29.97863 * 24 23 22 39 39 H 1.09000 * 109.47046 * 149.98561 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0458 1.2107 0.0000 4 6 2.3603 1.8279 1.2032 5 6 2.0166 1.1548 2.5070 6 6 2.9859 3.0569 1.2063 7 6 3.2981 3.6815 0.0002 8 6 3.9663 5.0064 0.0003 9 6 4.2874 5.6365 1.2053 10 7 4.8809 6.8144 1.2224 11 6 5.1998 7.4529 0.1176 12 6 4.9155 6.8935 -1.1425 13 6 5.2595 7.5810 -2.3297 14 1 6.0477 8.3193 -2.3172 15 6 4.5788 7.3046 -3.5207 16 7 3.4263 6.6862 -3.4871 17 14 5.3154 7.8187 -5.1586 18 1 6.1691 6.7227 -5.6831 19 1 4.2242 8.1019 -6.1251 20 1 6.1386 9.0401 -4.9695 21 6 4.2865 5.6338 -1.1997 22 6 2.9863 3.0568 -1.2060 23 6 2.3603 1.8280 -1.2030 24 6 2.0177 1.1545 -2.5069 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0278 -0.0005 27 1 -0.3634 0.5137 0.8900 28 1 1.0182 1.4591 2.8209 29 1 2.0422 0.0731 2.3752 30 1 2.7410 1.4454 3.2679 31 1 3.2299 3.5369 2.1426 32 1 4.0447 5.1511 2.1391 33 1 5.6855 8.4157 0.1778 34 1 2.9543 6.4950 -4.3125 35 1 4.0562 5.1704 -2.1477 36 1 3.2305 3.5368 -2.1423 37 1 1.0193 1.4584 -2.8214 38 1 2.7424 1.4452 -3.2673 39 1 2.0435 0.0728 -2.3749 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241016847.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:46 Heat of formation + Delta-G solvation = -5.286082 kcal Electronic energy + Delta-G solvation = -21441.002756 eV Core-core repulsion = 18312.696582 eV Total energy + Delta-G solvation = -3128.306174 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.01772 -38.45874 -36.87534 -34.17600 -33.38532 -32.40656 -30.44289 -28.78180 -27.88445 -26.70656 -25.73168 -25.45451 -22.59879 -21.90348 -20.31596 -19.85838 -17.50064 -17.33256 -16.20471 -15.78843 -15.50383 -15.21804 -14.61351 -14.30378 -13.65276 -13.60425 -13.41973 -13.20394 -13.07479 -12.75176 -12.56468 -12.47218 -12.06205 -11.78651 -11.77219 -11.62662 -11.36118 -11.32829 -11.17078 -10.94941 -10.83537 -10.59572 -9.91179 -9.71981 -9.44925 -8.93938 -8.27755 -8.17619 -7.92422 -7.20956 -6.91123 -4.57343 1.26517 1.69840 2.60056 2.86033 2.98330 3.01375 3.13238 3.79022 3.79846 4.23924 4.57046 4.98861 5.06989 5.22124 5.26188 5.30984 5.51304 5.55673 5.59561 5.64650 5.69130 5.74274 5.79813 5.83499 5.95578 5.98342 6.06172 6.21198 6.39219 6.44419 6.64739 6.72085 6.74843 6.83844 6.97545 7.06789 7.12269 7.20533 7.61635 7.74050 7.77990 7.84882 8.33237 8.58779 8.61822 9.54271 9.97829 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.018600 B = 0.004950 C = 0.003998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.045173 B = 5655.712425 C = 7001.906575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.334 6.334 3 C 0.068 3.932 4 C -0.100 4.100 5 C -0.108 4.108 6 C -0.115 4.115 7 C -0.003 4.003 8 C -0.094 4.094 9 C -0.023 4.023 10 N -0.470 5.470 11 C -0.016 4.016 12 C 0.061 3.939 13 C -0.449 4.449 14 H 0.085 0.915 15 C 0.075 3.925 16 N -0.790 5.790 17 Si 0.912 3.088 18 H -0.266 1.266 19 H -0.276 1.276 20 H -0.260 1.260 21 C -0.115 4.115 22 C -0.107 4.107 23 C -0.098 4.098 24 C -0.108 4.108 25 H 0.043 0.957 26 H 0.088 0.912 27 H 0.043 0.957 28 H 0.063 0.937 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.128 0.872 32 H 0.122 0.878 33 H 0.127 0.873 34 H 0.284 0.716 35 H 0.133 0.867 36 H 0.133 0.867 37 H 0.064 0.936 38 H 0.066 0.934 39 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.450 -10.643 1.661 12.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.251 6.251 3 C 0.025 3.975 4 C -0.101 4.101 5 C -0.164 4.164 6 C -0.133 4.133 7 C -0.004 4.004 8 C -0.097 4.097 9 C -0.181 4.181 10 N -0.177 5.177 11 C -0.177 4.177 12 C 0.057 3.943 13 C -0.479 4.479 14 H 0.103 0.897 15 C -0.144 4.144 16 N -0.415 5.415 17 Si 0.736 3.264 18 H -0.191 1.191 19 H -0.201 1.201 20 H -0.184 1.184 21 C -0.141 4.141 22 C -0.125 4.125 23 C -0.098 4.098 24 C -0.165 4.165 25 H 0.062 0.938 26 H 0.106 0.894 27 H 0.061 0.939 28 H 0.082 0.918 29 H 0.087 0.913 30 H 0.084 0.916 31 H 0.145 0.855 32 H 0.140 0.860 33 H 0.145 0.855 34 H 0.095 0.905 35 H 0.151 0.849 36 H 0.151 0.849 37 H 0.083 0.917 38 H 0.085 0.915 39 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -5.382 -10.516 2.307 12.036 hybrid contribution -0.209 0.107 -1.666 1.682 sum -5.592 -10.409 0.641 11.833 Atomic orbital electron populations 1.22920 0.80028 1.02424 1.00562 1.85949 1.19153 1.25614 1.94365 1.18247 1.00735 0.86974 0.91588 1.19983 1.00563 0.94840 0.94680 1.20650 1.01315 1.00632 0.93823 1.21005 0.99987 0.94147 0.98114 1.18984 0.95427 0.93490 0.92473 1.19439 1.01283 0.93373 0.95565 1.21786 1.06657 0.94462 0.95192 1.66947 1.09869 1.08209 1.32642 1.22559 1.07600 0.99743 0.87834 1.18474 0.90727 0.91446 0.93686 1.19583 1.16608 1.19590 0.92105 0.89732 1.25973 0.93539 0.93256 1.01610 1.69783 1.10509 1.30730 1.30463 0.86228 0.79673 0.80202 0.80252 1.19088 1.20150 1.18367 1.21860 1.01248 0.94615 0.96333 1.21159 0.98861 0.93786 0.98670 1.20028 1.00258 0.94797 0.94726 1.20661 1.01504 1.00457 0.93891 0.93809 0.89391 0.93859 0.91818 0.91259 0.91554 0.85456 0.86038 0.85529 0.90489 0.84909 0.84945 0.91729 0.91457 0.91295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.37 11.13 101.05 1.12 1.50 16 2 O -0.33 -4.73 8.48 -19.34 -0.16 -4.90 16 3 C 0.07 1.08 5.67 -39.14 -0.22 0.86 16 4 C -0.10 -1.58 5.89 -104.52 -0.62 -2.20 16 5 C -0.11 -1.33 9.79 36.00 0.35 -0.97 16 6 C -0.11 -2.01 9.08 -39.28 -0.36 -2.36 16 7 C 0.00 -0.06 5.88 -104.88 -0.62 -0.67 16 8 C -0.09 -2.18 5.88 -104.82 -0.62 -2.80 16 9 C -0.02 -0.53 10.60 -16.96 -0.18 -0.71 16 10 N -0.47 -11.58 10.32 -12.28 -0.13 -11.70 16 11 C -0.02 -0.41 10.96 -16.73 -0.18 -0.59 16 12 C 0.06 1.58 5.59 -106.71 -0.60 0.98 16 13 C -0.45 -11.29 9.08 -37.73 -0.34 -11.64 16 14 H 0.08 2.02 7.90 -52.49 -0.41 1.61 16 15 C 0.07 1.77 5.18 -17.34 -0.09 1.68 16 16 N -0.79 -19.20 10.92 55.55 0.61 -18.59 16 17 Si 0.91 17.66 29.59 -169.99 -5.03 12.63 16 18 H -0.27 -5.11 7.11 56.52 0.40 -4.70 16 19 H -0.28 -5.25 7.11 56.52 0.40 -4.85 16 20 H -0.26 -4.98 7.11 56.52 0.40 -4.58 16 21 C -0.12 -2.88 8.16 -38.23 -0.31 -3.19 16 22 C -0.11 -2.02 9.08 -39.28 -0.36 -2.38 16 23 C -0.10 -1.62 5.89 -104.52 -0.62 -2.24 16 24 C -0.11 -1.48 9.79 36.01 0.35 -1.13 16 25 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.09 0.71 8.14 -51.92 -0.42 0.29 16 27 H 0.04 0.44 8.14 -51.93 -0.42 0.01 16 28 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.07 0.82 7.52 -51.93 -0.39 0.43 16 30 H 0.07 0.75 8.08 -51.93 -0.42 0.33 16 31 H 0.13 2.06 6.21 -52.48 -0.33 1.73 16 32 H 0.12 2.46 6.20 -52.48 -0.33 2.13 16 33 H 0.13 2.91 8.06 -52.48 -0.42 2.49 16 34 H 0.28 6.26 8.30 -40.82 -0.34 5.92 16 35 H 0.13 3.32 4.44 -52.49 -0.23 3.09 16 36 H 0.13 2.59 6.26 -52.48 -0.33 2.26 16 37 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.07 0.88 8.08 -51.93 -0.42 0.46 16 39 H 0.07 0.88 7.52 -51.93 -0.39 0.49 16 LS Contribution 327.55 15.07 4.94 4.94 Total: -1.00 -27.72 327.55 -7.97 -35.69 By element: Atomic # 1 Polarization: 12.72 SS G_CDS: -4.92 Total: 7.80 kcal Atomic # 6 Polarization: -22.59 SS G_CDS: -3.27 Total: -25.86 kcal Atomic # 7 Polarization: -30.77 SS G_CDS: 0.48 Total: -30.29 kcal Atomic # 8 Polarization: -4.73 SS G_CDS: -0.16 Total: -4.90 kcal Atomic # 14 Polarization: 17.66 SS G_CDS: -5.03 Total: 12.63 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -27.72 -7.97 -35.69 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241016847.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.406 kcal (2) G-P(sol) polarization free energy of solvation -27.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds