Wall clock time and date at job start Tue Mar 31 2020 05:42:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35849 * 117.00188 * 2 1 4 4 C 1.38859 * 119.93347 * 270.23201 * 3 2 1 5 5 C 1.50693 * 119.96629 * 0.02562 * 4 3 2 6 6 C 1.37879 * 120.06586 * 180.23148 * 4 3 2 7 7 C 1.39410 * 119.93306 * 359.51368 * 6 4 3 8 8 C 1.48322 * 120.06227 * 180.23601 * 7 6 4 9 9 C 1.40064 * 120.82943 * 359.97438 * 8 7 6 10 10 C 1.38471 * 119.42496 * 180.02562 * 9 8 7 11 11 N 1.31497 * 121.15000 * 0.02562 * 10 9 8 12 12 C 1.33661 * 121.80009 * 0.02562 * 11 10 9 13 13 C 1.41426 * 119.77994 * 180.02562 * 12 11 10 14 14 H 1.07994 * 120.00362 * 179.97438 * 13 12 11 15 15 C 1.40037 * 119.99708 * 359.97438 * 13 12 11 16 16 N 1.30737 * 120.00192 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 119.99496 * 180.02562 * 15 13 12 18 18 H 1.48494 * 109.47450 * 59.99927 * 17 15 13 19 19 H 1.48507 * 109.46683 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47333 * 299.99687 * 17 15 13 21 21 C 1.39353 * 120.82150 * 179.72507 * 8 7 6 22 22 C 1.39401 * 119.86885 * 0.25456 * 7 6 4 23 23 C 1.37887 * 119.93546 * 359.97438 * 22 7 6 24 24 C 1.50694 * 119.96759 * 179.97438 * 23 22 7 25 25 H 1.09001 * 109.46836 * 299.99689 * 1 2 3 26 26 H 1.09000 * 109.47144 * 60.00169 * 1 2 3 27 27 H 1.08996 * 109.47098 * 180.02562 * 1 2 3 28 28 H 1.09011 * 109.47351 * 270.22963 * 5 4 3 29 29 H 1.09001 * 109.47376 * 30.22924 * 5 4 3 30 30 H 1.09003 * 109.47330 * 150.23461 * 5 4 3 31 31 H 1.08002 * 120.03631 * 179.79582 * 6 4 3 32 32 H 1.08004 * 120.28747 * 0.02937 * 9 8 7 33 33 H 1.07999 * 119.43135 * 179.97438 * 10 9 8 34 34 H 0.96996 * 120.00079 * 180.02562 * 16 15 13 35 35 H 1.08005 * 120.58420 * 359.97438 * 21 8 7 36 36 H 1.07998 * 120.03590 * 180.02562 * 22 7 6 37 37 H 1.09000 * 109.47498 * 90.00246 * 24 23 22 38 38 H 1.09002 * 109.47436 * 209.99967 * 24 23 22 39 39 H 1.09000 * 109.47346 * 329.99724 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0458 1.2104 0.0000 4 6 2.3560 1.8300 -1.2033 5 6 2.0077 1.1593 -2.5071 6 6 2.9863 3.0563 -1.2066 7 6 3.3030 3.6788 0.0000 8 6 3.9763 5.0004 -0.0002 9 6 4.3029 5.6395 -1.2029 10 6 4.9318 6.8727 -1.1691 11 7 5.2281 7.4541 -0.0274 12 6 4.9391 6.8866 1.1477 13 6 5.2767 7.5503 2.3501 14 1 5.0446 7.0954 3.3016 15 6 5.9121 8.7975 2.3068 16 7 6.1927 9.3486 1.1549 17 14 6.3587 9.6738 3.8949 18 1 7.2872 8.8253 4.6843 19 1 7.0178 10.9663 3.5785 20 1 5.1265 9.9261 4.6844 21 6 4.2949 5.6395 1.1965 22 6 2.9859 3.0566 1.2064 23 6 2.3598 1.8280 1.2033 24 6 2.0173 1.1545 2.5071 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 2.8376 0.5274 -2.8238 29 1 1.1154 0.5475 -2.3739 30 1 1.8181 1.9178 -3.2667 31 1 3.2303 3.5362 -2.1428 32 1 4.0663 5.1744 -2.1486 33 1 5.1841 7.3654 -2.0965 34 1 6.6331 10.2122 1.1249 35 1 4.0556 5.1814 2.1448 36 1 3.2296 3.5366 2.1426 37 1 1.0191 1.4586 2.8220 38 1 2.0427 0.0728 2.3750 39 1 2.7423 1.4447 3.2675 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241017450.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:59 Heat of formation + Delta-G solvation = 7.006482 kcal Electronic energy + Delta-G solvation = -21120.948144 eV Core-core repulsion = 17993.175016 eV Total energy + Delta-G solvation = -3127.773128 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.11202 -38.33560 -36.93928 -33.75078 -33.49772 -32.32736 -30.08237 -29.04378 -28.01752 -26.74494 -25.87125 -25.49024 -22.73343 -21.67350 -20.30463 -20.06577 -17.59318 -17.25270 -16.34694 -15.70052 -15.53376 -14.94379 -14.42800 -14.22310 -13.64932 -13.53232 -13.46320 -13.23366 -13.08535 -12.93660 -12.56235 -12.37913 -12.32792 -11.94349 -11.86298 -11.49141 -11.39485 -11.27491 -11.11045 -10.83510 -10.69046 -10.40656 -9.96357 -9.71356 -9.46994 -8.92774 -8.38348 -7.70273 -7.61217 -7.40968 -6.43495 -4.56667 1.19070 1.59069 2.73570 2.89790 3.06594 3.08638 3.16810 3.77215 3.92094 4.19868 4.75438 4.88749 4.96645 5.11492 5.17834 5.21477 5.41551 5.49866 5.55639 5.62941 5.65046 5.71662 5.73530 5.85805 5.88526 5.90746 6.03730 6.13485 6.29264 6.45684 6.60064 6.62588 6.66318 6.78192 6.94551 6.99549 7.12003 7.28675 7.47301 7.64992 7.69504 7.96439 8.18050 8.61366 8.86973 10.07277 10.28565 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.027279 B = 0.003825 C = 0.003393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.175329 B = 7318.962936 C = 8251.353169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.333 6.333 3 C 0.071 3.929 4 C -0.101 4.101 5 C -0.106 4.106 6 C -0.108 4.108 7 C -0.012 4.012 8 C -0.003 4.003 9 C -0.303 4.303 10 C 0.124 3.876 11 N -0.482 5.482 12 C 0.254 3.746 13 C -0.432 4.432 14 H 0.083 0.917 15 C 0.069 3.931 16 N -0.715 5.715 17 Si 0.908 3.092 18 H -0.264 1.264 19 H -0.277 1.277 20 H -0.264 1.264 21 C -0.251 4.251 22 C -0.108 4.108 23 C -0.099 4.099 24 C -0.109 4.109 25 H 0.044 0.956 26 H 0.044 0.956 27 H 0.089 0.911 28 H 0.069 0.931 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.129 0.871 32 H 0.097 0.903 33 H 0.120 0.880 34 H 0.274 0.726 35 H 0.103 0.897 36 H 0.131 0.869 37 H 0.064 0.936 38 H 0.069 0.931 39 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.350 -12.522 -1.671 15.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.250 6.250 3 C 0.028 3.972 4 C -0.101 4.101 5 C -0.162 4.162 6 C -0.126 4.126 7 C -0.012 4.012 8 C -0.009 4.009 9 C -0.326 4.326 10 C -0.041 4.041 11 N -0.195 5.195 12 C 0.130 3.870 13 C -0.463 4.463 14 H 0.101 0.899 15 C -0.156 4.156 16 N -0.336 5.336 17 Si 0.732 3.268 18 H -0.189 1.189 19 H -0.202 1.202 20 H -0.189 1.189 21 C -0.274 4.274 22 C -0.126 4.126 23 C -0.100 4.100 24 C -0.166 4.166 25 H 0.062 0.938 26 H 0.062 0.938 27 H 0.107 0.893 28 H 0.088 0.912 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.147 0.853 32 H 0.115 0.885 33 H 0.137 0.863 34 H 0.085 0.915 35 H 0.121 0.879 36 H 0.148 0.852 37 H 0.083 0.917 38 H 0.088 0.912 39 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -7.751 -11.675 -1.732 14.120 hybrid contribution -0.362 -0.207 0.600 0.731 sum -8.113 -11.882 -1.132 14.432 Atomic orbital electron populations 1.22942 0.80000 1.02559 1.00580 1.85980 1.19164 1.25496 1.94368 1.18280 1.00459 0.86926 0.91573 1.20025 1.00512 0.94851 0.94761 1.20655 1.01723 1.00120 0.93742 1.21048 0.99153 0.94130 0.98298 1.19085 0.95684 0.93913 0.92494 1.18572 0.96795 0.91302 0.94266 1.21335 1.14895 1.00558 0.95861 1.22456 0.93410 0.91325 0.96878 1.68730 1.21046 1.33204 0.96538 1.18542 0.88372 0.88167 0.91936 1.19593 1.32384 1.01728 0.92607 0.89854 1.26066 0.94618 0.97558 0.97401 1.70119 1.24512 1.13461 1.25554 0.86388 0.79624 0.78791 0.82027 1.18897 1.20182 1.18906 1.21875 1.10418 0.99406 0.95732 1.21111 0.99051 0.93956 0.98461 1.20034 1.00360 0.94768 0.94797 1.20669 1.01470 1.00630 0.93802 0.93761 0.93767 0.89281 0.91192 0.91834 0.91698 0.85321 0.88478 0.86259 0.91505 0.87940 0.85158 0.91708 0.91189 0.91390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.75 101.05 1.09 1.42 16 2 O -0.33 -4.47 8.66 -19.27 -0.17 -4.64 16 3 C 0.07 1.08 5.67 -39.12 -0.22 0.86 16 4 C -0.10 -1.53 5.89 -104.53 -0.62 -2.14 16 5 C -0.11 -1.25 9.78 36.00 0.35 -0.90 16 6 C -0.11 -1.83 9.09 -39.28 -0.36 -2.19 16 7 C -0.01 -0.22 5.88 -104.88 -0.62 -0.84 16 8 C 0.00 -0.08 5.91 -104.65 -0.62 -0.69 16 9 C -0.30 -6.75 9.51 -38.81 -0.37 -7.12 16 10 C 0.12 3.00 11.17 -17.61 -0.20 2.81 16 11 N -0.48 -13.30 7.85 -11.21 -0.09 -13.39 16 12 C 0.25 6.93 6.55 -85.02 -0.56 6.37 16 13 C -0.43 -11.48 9.14 -37.70 -0.34 -11.82 16 14 H 0.08 2.05 7.85 -52.49 -0.41 1.64 16 15 C 0.07 1.75 5.50 -17.34 -0.10 1.65 16 16 N -0.72 -19.01 11.46 55.55 0.64 -18.37 16 17 Si 0.91 18.44 29.56 -169.99 -5.02 13.42 16 18 H -0.26 -5.29 7.11 56.52 0.40 -4.89 16 19 H -0.28 -5.49 7.11 56.52 0.40 -5.08 16 20 H -0.26 -5.29 7.11 56.52 0.40 -4.88 16 21 C -0.25 -6.12 9.22 -38.33 -0.35 -6.48 16 22 C -0.11 -1.88 9.09 -39.28 -0.36 -2.24 16 23 C -0.10 -1.53 5.89 -104.53 -0.62 -2.14 16 24 C -0.11 -1.34 9.79 36.00 0.35 -0.99 16 25 H 0.04 0.42 8.14 -51.93 -0.42 -0.01 16 26 H 0.04 0.41 7.22 -51.93 -0.38 0.04 16 27 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.07 0.78 8.14 -51.92 -0.42 0.36 16 29 H 0.06 0.68 6.28 -51.93 -0.33 0.36 16 30 H 0.06 0.69 8.08 -51.93 -0.42 0.27 16 31 H 0.13 2.04 6.28 -52.49 -0.33 1.71 16 32 H 0.10 1.88 6.32 -52.48 -0.33 1.54 16 33 H 0.12 2.54 8.06 -52.49 -0.42 2.12 16 34 H 0.27 6.59 8.29 -40.82 -0.34 6.25 16 35 H 0.10 2.29 6.33 -52.48 -0.33 1.96 16 36 H 0.13 2.22 6.28 -52.49 -0.33 1.89 16 37 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.07 0.82 7.52 -51.93 -0.39 0.43 16 39 H 0.07 0.78 8.08 -51.93 -0.42 0.36 16 LS Contribution 326.83 15.07 4.93 4.93 Total: -1.00 -29.77 326.83 -8.16 -37.93 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: -4.91 Total: 4.57 kcal Atomic # 6 Polarization: -20.92 SS G_CDS: -3.53 Total: -24.45 kcal Atomic # 7 Polarization: -32.30 SS G_CDS: 0.55 Total: -31.76 kcal Atomic # 8 Polarization: -4.47 SS G_CDS: -0.17 Total: -4.64 kcal Atomic # 14 Polarization: 18.44 SS G_CDS: -5.02 Total: 13.42 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -29.77 -8.16 -37.93 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241017450.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.934 kcal (2) G-P(sol) polarization free energy of solvation -29.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.928 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds