Wall clock time and date at job start Tue Mar 31 2020 05:42:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35906 * 116.99571 * 2 1 4 4 C 1.38446 * 119.98288 * 0.25515 * 3 2 1 5 5 C 1.39571 * 119.78794 * 180.23168 * 4 3 2 6 6 C 1.47837 * 120.12269 * 179.76628 * 5 4 3 7 7 N 1.32568 * 119.98663 * 316.12616 * 6 5 4 8 8 C 1.31750 * 121.71857 * 179.97438 * 7 6 5 9 9 C 1.50699 * 119.24972 * 179.97438 * 8 7 6 10 10 C 1.38866 * 121.50073 * 0.25866 * 8 7 6 11 11 C 1.36885 * 119.80242 * 359.46033 * 10 8 7 12 12 C 1.41121 * 118.38966 * 0.51935 * 11 10 8 13 13 C 1.40892 * 120.71892 * 179.72500 * 12 11 10 14 14 H 1.07997 * 120.00002 * 151.62078 * 13 12 11 15 15 C 1.40076 * 119.99611 * 331.62376 * 13 12 11 16 16 N 1.30773 * 120.00110 * 348.26348 * 15 13 12 17 17 Si 1.86798 * 119.99658 * 168.26763 * 15 13 12 18 18 H 1.48495 * 109.47282 * 359.97438 * 17 15 13 19 19 H 1.48494 * 109.47258 * 119.99841 * 17 15 13 20 20 H 1.48504 * 109.46761 * 239.99791 * 17 15 13 21 21 C 1.39706 * 119.75329 * 359.49307 * 5 4 3 22 22 C 1.37925 * 119.96085 * 0.27594 * 21 5 4 23 23 C 1.38332 * 120.20973 * 359.97438 * 22 21 5 24 24 C 1.50699 * 119.87751 * 180.02562 * 23 22 21 25 25 H 1.09004 * 109.46726 * 179.97438 * 1 2 3 26 26 H 1.08989 * 109.47192 * 299.99848 * 1 2 3 27 27 H 1.08999 * 109.47244 * 60.00348 * 1 2 3 28 28 H 1.07998 * 120.10711 * 0.02562 * 4 3 2 29 29 H 1.08997 * 109.47153 * 89.99694 * 9 8 7 30 30 H 1.09004 * 109.46980 * 330.00210 * 9 8 7 31 31 H 1.08999 * 109.47300 * 210.00189 * 9 8 7 32 32 H 1.08010 * 120.09923 * 179.72166 * 10 8 7 33 33 H 1.07999 * 120.80320 * 180.24386 * 11 10 8 34 34 H 0.97003 * 119.99430 * 179.97438 * 16 15 13 35 35 H 1.08010 * 120.02240 * 180.25617 * 21 5 4 36 36 H 1.08003 * 119.89968 * 180.02562 * 22 21 5 37 37 H 1.08998 * 109.47562 * 89.99792 * 24 23 22 38 38 H 1.09002 * 109.46804 * 210.00130 * 24 23 22 39 39 H 1.09004 * 109.46957 * 329.99581 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2915 2.3718 0.0053 5 6 1.9292 3.6133 0.0004 6 6 1.1308 4.8575 0.0009 7 7 0.0734 4.9665 -0.7912 8 6 -0.6623 6.0591 -0.8180 9 6 -1.8523 6.1231 -1.7404 10 6 -0.3629 7.1552 -0.0197 11 6 0.7123 7.1074 0.8261 12 6 1.4959 5.9340 0.8496 13 6 2.6168 5.8339 1.6973 14 1 2.9308 4.8685 2.0656 15 6 3.3239 6.9867 2.0623 16 7 3.0951 8.1169 1.4454 17 14 4.5938 6.9095 3.4300 18 1 4.6633 5.5254 3.9635 19 1 5.9223 7.3015 2.8948 20 1 4.2048 7.8406 4.5196 21 6 3.3249 3.6758 0.0009 22 6 4.0665 2.5128 0.0004 23 6 3.4328 1.2832 0.0000 24 6 4.2504 0.0173 0.0001 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 0.2129 2.3169 0.0099 29 1 -2.7360 5.7548 -1.2195 30 1 -1.6647 5.5056 -2.6189 31 1 -2.0169 7.1552 -2.0501 32 1 -0.9789 8.0413 -0.0631 33 1 0.9576 7.9490 1.4569 34 1 3.5846 8.9153 1.6985 35 1 3.8229 4.6342 0.0013 36 1 5.1454 2.5623 0.0012 37 1 4.4473 -0.2881 1.0277 38 1 3.7000 -0.7707 -0.5140 39 1 5.1953 0.1950 -0.5135 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241033300.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:03 Heat of formation + Delta-G solvation = -3.797343 kcal Electronic energy + Delta-G solvation = -21733.014515 eV Core-core repulsion = 18604.772898 eV Total energy + Delta-G solvation = -3128.241617 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.71500 -38.55999 -36.73532 -34.38147 -32.96856 -31.03956 -30.41243 -29.52327 -27.93878 -27.24213 -26.19516 -24.10568 -21.93783 -21.61922 -20.61162 -20.07177 -17.49987 -17.10614 -15.88775 -15.54566 -15.36716 -14.85533 -14.54093 -14.29500 -13.92210 -13.52547 -13.15204 -13.12556 -13.05652 -12.53177 -12.05709 -11.93115 -11.81110 -11.70317 -11.53938 -11.50739 -11.41935 -11.16352 -11.01243 -10.68456 -10.60858 -10.50219 -10.34430 -9.78332 -9.45854 -8.50006 -8.14647 -8.09526 -7.58858 -7.23229 -6.91168 -4.54752 1.78274 2.15463 2.57337 2.93132 2.97728 3.04059 3.10027 3.69541 3.78427 4.40834 4.52444 5.27072 5.32323 5.43274 5.43878 5.47241 5.56113 5.67258 5.81385 5.92861 5.99169 6.01696 6.08682 6.17934 6.24911 6.29442 6.34785 6.44082 6.48801 6.70378 6.74800 6.86108 6.93728 7.02265 7.13991 7.23789 7.40842 7.45160 7.63322 7.78562 7.86547 7.95939 8.33814 8.55144 8.61619 9.52790 9.95479 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.012052 B = 0.007270 C = 0.004842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2322.652714 B = 3850.345242 C = 5781.409034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.323 6.323 3 C 0.112 3.888 4 C -0.191 4.191 5 C 0.057 3.943 6 C 0.014 3.986 7 N -0.449 5.449 8 C -0.008 4.008 9 C -0.074 4.074 10 C -0.143 4.143 11 C -0.125 4.125 12 C 0.084 3.916 13 C -0.437 4.437 14 H 0.090 0.910 15 C 0.073 3.927 16 N -0.789 5.789 17 Si 0.910 3.090 18 H -0.256 1.256 19 H -0.271 1.271 20 H -0.271 1.271 21 C -0.124 4.124 22 C -0.095 4.095 23 C -0.141 4.141 24 C -0.095 4.095 25 H 0.091 0.909 26 H 0.052 0.948 27 H 0.054 0.946 28 H 0.123 0.877 29 H 0.049 0.951 30 H 0.055 0.945 31 H 0.052 0.948 32 H 0.099 0.901 33 H 0.128 0.872 34 H 0.284 0.716 35 H 0.136 0.864 36 H 0.120 0.880 37 H 0.058 0.942 38 H 0.062 0.938 39 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.625 -7.259 -0.498 7.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.237 6.237 3 C 0.067 3.933 4 C -0.210 4.210 5 C 0.056 3.944 6 C -0.124 4.124 7 N -0.158 5.158 8 C -0.150 4.150 9 C -0.131 4.131 10 C -0.164 4.164 11 C -0.151 4.151 12 C 0.079 3.921 13 C -0.466 4.466 14 H 0.108 0.892 15 C -0.146 4.146 16 N -0.413 5.413 17 Si 0.734 3.266 18 H -0.179 1.179 19 H -0.196 1.196 20 H -0.196 1.196 21 C -0.143 4.143 22 C -0.113 4.113 23 C -0.142 4.142 24 C -0.152 4.152 25 H 0.110 0.890 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.141 0.859 29 H 0.068 0.932 30 H 0.074 0.926 31 H 0.071 0.929 32 H 0.117 0.883 33 H 0.146 0.854 34 H 0.095 0.905 35 H 0.153 0.847 36 H 0.138 0.862 37 H 0.077 0.923 38 H 0.081 0.919 39 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -0.687 -7.879 -1.041 7.978 hybrid contribution 0.461 1.220 1.173 1.754 sum -0.226 -6.660 0.132 6.665 Atomic orbital electron populations 1.22942 0.79195 1.02835 1.01564 1.85965 1.20696 1.27494 1.89520 1.18633 0.91592 0.83698 0.99339 1.21293 0.99641 0.91418 1.08659 1.18206 0.92128 0.90670 0.93427 1.19467 0.97310 0.95419 1.00171 1.66837 1.04245 1.25069 1.19612 1.20269 0.99891 0.91519 1.03324 1.20284 0.94734 1.00507 0.97623 1.21264 0.98575 0.97879 0.98637 1.21441 0.93755 0.99772 1.00128 1.18341 0.92337 0.90876 0.90517 1.19681 1.08878 0.94663 1.23364 0.89163 1.26011 0.97983 0.94576 0.96037 1.69752 1.36043 1.01007 1.34537 0.86198 0.79751 0.80105 0.80584 1.17938 1.19607 1.19567 1.21383 0.93232 0.98657 1.01043 1.20694 0.99114 0.91058 1.00413 1.19090 0.90343 0.95745 1.08982 1.20489 0.98411 0.94908 1.01391 0.89023 0.92941 0.92773 0.85904 0.93200 0.92611 0.92869 0.88303 0.85389 0.90462 0.84660 0.86164 0.92277 0.91923 0.92386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 9.81 101.05 0.99 1.39 16 2 O -0.32 -5.36 9.52 -19.44 -0.19 -5.54 16 3 C 0.11 2.09 6.65 -39.27 -0.26 1.83 16 4 C -0.19 -3.92 8.65 -39.01 -0.34 -4.26 16 5 C 0.06 1.29 5.26 -104.92 -0.55 0.73 16 6 C 0.01 0.35 6.43 -82.24 -0.53 -0.17 16 7 N -0.45 -11.00 10.05 -5.44 -0.05 -11.05 16 8 C -0.01 -0.19 6.79 -82.40 -0.56 -0.74 16 9 C -0.07 -1.32 10.15 36.01 0.37 -0.96 16 10 C -0.14 -3.26 9.64 -39.84 -0.38 -3.65 16 11 C -0.13 -3.12 8.72 -38.98 -0.34 -3.46 16 12 C 0.08 2.15 5.54 -106.41 -0.59 1.56 16 13 C -0.44 -10.79 6.72 -37.89 -0.25 -11.04 16 14 H 0.09 2.21 6.47 -52.49 -0.34 1.87 16 15 C 0.07 1.70 5.26 -17.31 -0.09 1.61 16 16 N -0.79 -18.99 10.91 55.55 0.61 -18.39 16 17 Si 0.91 17.65 29.58 -169.99 -5.03 12.62 16 18 H -0.26 -4.98 7.11 56.52 0.40 -4.58 16 19 H -0.27 -5.17 7.11 56.52 0.40 -4.77 16 20 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 21 C -0.12 -2.61 7.84 -39.15 -0.31 -2.92 16 22 C -0.09 -1.71 9.67 -39.66 -0.38 -2.10 16 23 C -0.14 -2.48 5.90 -104.35 -0.62 -3.10 16 24 C -0.10 -1.34 9.78 36.00 0.35 -0.99 16 25 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 26 H 0.05 0.69 7.65 -51.94 -0.40 0.29 16 27 H 0.05 0.71 7.67 -51.93 -0.40 0.31 16 28 H 0.12 2.47 6.29 -52.49 -0.33 2.14 16 29 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.05 0.84 8.07 -51.93 -0.42 0.42 16 32 H 0.10 1.96 8.06 -52.48 -0.42 1.54 16 33 H 0.13 3.21 6.33 -52.49 -0.33 2.88 16 34 H 0.28 6.21 8.29 -40.82 -0.34 5.87 16 35 H 0.14 2.98 6.74 -52.48 -0.35 2.62 16 36 H 0.12 1.83 8.06 -52.48 -0.42 1.40 16 37 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.06 0.86 7.52 -51.93 -0.39 0.47 16 39 H 0.06 0.71 8.08 -51.93 -0.42 0.29 16 LS Contribution 325.98 15.07 4.91 4.91 Total: -1.00 -27.66 325.98 -8.29 -35.95 By element: Atomic # 1 Polarization: 12.81 SS G_CDS: -5.05 Total: 7.76 kcal Atomic # 6 Polarization: -22.78 SS G_CDS: -3.49 Total: -26.27 kcal Atomic # 7 Polarization: -29.99 SS G_CDS: 0.55 Total: -29.44 kcal Atomic # 8 Polarization: -5.36 SS G_CDS: -0.19 Total: -5.54 kcal Atomic # 14 Polarization: 17.65 SS G_CDS: -5.03 Total: 12.62 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -27.66 -8.29 -35.95 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241033300.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.157 kcal (2) G-P(sol) polarization free energy of solvation -27.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds