Wall clock time and date at job start Tue Mar 31 2020 05:42:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35906 * 116.99731 * 2 1 4 4 C 1.38463 * 119.98833 * 0.23066 * 3 2 1 5 5 C 1.39502 * 119.80124 * 180.25455 * 4 3 2 6 6 C 1.47965 * 120.12116 * 179.76477 * 5 4 3 7 7 C 1.39897 * 119.44982 * 184.72696 * 6 5 4 8 8 C 1.36607 * 119.46493 * 180.29662 * 7 6 5 9 9 C 1.41304 * 118.41301 * 359.44896 * 8 7 6 10 10 C 1.41055 * 120.55377 * 180.26109 * 9 8 7 11 11 H 1.08004 * 120.00178 * 205.26284 * 10 9 8 12 12 C 1.40027 * 120.00397 * 25.25993 * 10 9 8 13 13 N 1.30798 * 119.99705 * 14.34791 * 12 10 9 14 14 Si 1.86792 * 120.00471 * 194.34915 * 12 10 9 15 15 H 1.48502 * 109.46992 * 59.99833 * 14 12 10 16 16 H 1.48497 * 109.47596 * 180.02562 * 14 12 10 17 17 H 1.48500 * 109.46989 * 300.00375 * 14 12 10 18 18 C 1.40950 * 118.89299 * 0.56890 * 9 8 7 19 19 C 1.50699 * 119.79889 * 179.71767 * 18 9 8 20 20 N 1.31261 * 120.39713 * 359.68789 * 18 9 8 21 21 C 1.39657 * 119.76274 * 359.49064 * 5 4 3 22 22 C 1.37950 * 119.96229 * 0.27658 * 21 5 4 23 23 C 1.38322 * 120.20222 * 359.97438 * 22 21 5 24 24 C 1.50700 * 119.87697 * 180.02562 * 23 22 21 25 25 H 1.09004 * 109.46753 * 60.00169 * 1 2 3 26 26 H 1.08999 * 109.46950 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47471 * 300.00714 * 1 2 3 28 28 H 1.08004 * 120.10161 * 0.04165 * 4 3 2 29 29 H 1.07996 * 120.26920 * 0.02562 * 7 6 5 30 30 H 1.08000 * 120.79127 * 179.69210 * 8 7 6 31 31 H 0.96996 * 119.99936 * 180.02562 * 13 12 10 32 32 H 1.09001 * 109.46892 * 269.97452 * 19 18 9 33 33 H 1.08997 * 109.47407 * 29.97705 * 19 18 9 34 34 H 1.09005 * 109.46905 * 149.97706 * 19 18 9 35 35 H 1.07996 * 120.02096 * 180.25402 * 21 5 4 36 36 H 1.08002 * 119.89590 * 180.02562 * 22 21 5 37 37 H 1.09001 * 109.47374 * 90.00050 * 24 23 22 38 38 H 1.09000 * 109.46940 * 209.99966 * 24 23 22 39 39 H 1.09001 * 109.47104 * 330.00331 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2916 2.3720 0.0048 5 6 1.9289 3.6129 -0.0006 6 6 1.1296 4.8581 -0.0007 7 6 1.7794 6.0925 -0.1065 8 6 1.0422 7.2426 -0.1006 9 6 -0.3633 7.1398 0.0015 10 6 -1.1686 8.2979 0.0063 11 1 -2.1413 8.2774 0.4753 12 6 -0.7068 9.4743 -0.5967 13 7 0.3256 9.4363 -1.3989 14 14 -1.5652 11.0979 -0.2558 15 1 -1.5062 11.3932 1.1984 16 1 -0.8885 12.1836 -1.0097 17 1 -2.9839 11.0075 -0.6852 18 6 -0.9469 5.8610 0.1050 19 6 -2.4435 5.7279 0.2213 20 7 -0.1947 4.7853 0.1001 21 6 3.3240 3.6758 0.0000 22 6 4.0661 2.5129 0.0001 23 6 3.4326 1.2832 0.0001 24 6 4.2505 0.0175 0.0008 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 0.2129 2.3171 0.0093 29 1 2.8554 6.1361 -0.1878 30 1 1.5221 8.2072 -0.1761 31 1 0.6457 10.2512 -1.8163 32 1 -2.7290 5.7439 1.2731 33 1 -2.9235 6.5573 -0.2981 34 1 -2.7605 4.7862 -0.2270 35 1 3.8217 4.6343 0.0000 36 1 5.1450 2.5628 0.0009 37 1 4.4473 -0.2875 1.0286 38 1 3.7003 -0.7708 -0.5130 39 1 5.1954 0.1952 -0.5126 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241034827.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:06 Heat of formation + Delta-G solvation = -4.859189 kcal Electronic energy + Delta-G solvation = -21194.979830 eV Core-core repulsion = 18066.692168 eV Total energy + Delta-G solvation = -3128.287662 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.82861 -38.58866 -36.91297 -34.41474 -32.92662 -31.38348 -30.54776 -29.63861 -27.38597 -27.07328 -26.84731 -24.27127 -21.98968 -21.93683 -20.49895 -19.95611 -17.59947 -17.19722 -16.09654 -15.52530 -15.46933 -15.18803 -14.52738 -14.39008 -13.80898 -13.50946 -13.36699 -13.15974 -13.09211 -12.58633 -12.01154 -11.94821 -11.92179 -11.74570 -11.67068 -11.58078 -11.33474 -11.26595 -11.00009 -10.83363 -10.78447 -10.54057 -10.37303 -9.84576 -9.55644 -8.52848 -8.28957 -8.13127 -7.84668 -7.21543 -6.98354 -4.60168 1.53450 1.94615 2.63560 2.88687 2.91482 2.93487 3.12987 3.59223 3.69715 4.17525 4.61077 5.18956 5.21546 5.34433 5.39605 5.42135 5.51666 5.59370 5.66164 5.77756 5.87527 5.92589 6.02105 6.07239 6.23083 6.29534 6.39964 6.57214 6.59889 6.62563 6.69729 6.78908 6.90004 6.93838 6.99571 7.20427 7.21689 7.31382 7.61626 7.71719 7.80250 7.87256 8.26396 8.46724 8.57266 9.52485 9.84593 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.029780 B = 0.003916 C = 0.003506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.995832 B = 7147.584499 C = 7984.157826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.322 6.322 3 C 0.122 3.878 4 C -0.196 4.196 5 C 0.053 3.947 6 C -0.006 4.006 7 C -0.122 4.122 8 C -0.143 4.143 9 C 0.074 3.926 10 C -0.429 4.429 11 H 0.089 0.911 12 C 0.071 3.929 13 N -0.777 5.777 14 Si 0.917 3.083 15 H -0.260 1.260 16 H -0.275 1.275 17 H -0.261 1.261 18 C 0.007 3.993 19 C -0.071 4.071 20 N -0.446 5.446 21 C -0.165 4.165 22 C -0.082 4.082 23 C -0.151 4.151 24 C -0.095 4.095 25 H 0.055 0.945 26 H 0.093 0.907 27 H 0.055 0.945 28 H 0.135 0.865 29 H 0.102 0.898 30 H 0.129 0.871 31 H 0.288 0.712 32 H 0.048 0.952 33 H 0.067 0.933 34 H 0.049 0.951 35 H 0.122 0.878 36 H 0.121 0.879 37 H 0.058 0.942 38 H 0.063 0.937 39 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.337 -8.068 1.510 8.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.236 6.236 3 C 0.078 3.922 4 C -0.216 4.216 5 C 0.052 3.948 6 C -0.139 4.139 7 C -0.143 4.143 8 C -0.168 4.168 9 C 0.069 3.931 10 C -0.458 4.458 11 H 0.107 0.893 12 C -0.150 4.150 13 N -0.401 5.401 14 Si 0.740 3.260 15 H -0.185 1.185 16 H -0.200 1.200 17 H -0.186 1.186 18 C -0.139 4.139 19 C -0.129 4.129 20 N -0.155 5.155 21 C -0.185 4.185 22 C -0.100 4.100 23 C -0.152 4.152 24 C -0.152 4.152 25 H 0.073 0.927 26 H 0.111 0.889 27 H 0.074 0.926 28 H 0.153 0.847 29 H 0.120 0.880 30 H 0.147 0.853 31 H 0.099 0.901 32 H 0.067 0.933 33 H 0.086 0.914 34 H 0.068 0.932 35 H 0.140 0.860 36 H 0.139 0.861 37 H 0.077 0.923 38 H 0.082 0.918 39 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 2.195 -8.910 1.401 9.282 hybrid contribution -0.104 1.923 -0.070 1.928 sum 2.090 -6.986 1.330 7.413 Atomic orbital electron populations 1.22980 0.78844 1.02976 1.01827 1.85971 1.20993 1.27371 1.89229 1.18731 0.91604 0.83934 0.97956 1.21310 1.00527 0.91019 1.08713 1.18459 0.91868 0.91554 0.92892 1.18726 0.89342 0.90617 1.15252 1.21314 0.98857 0.93312 1.00786 1.21369 0.93723 0.97571 1.04117 1.18431 0.92752 0.92840 0.89030 1.19696 1.03028 0.93727 1.29326 0.89319 1.26112 0.94607 1.01598 0.92689 1.69764 1.20483 1.30994 1.18821 0.86201 0.80285 0.79485 0.79989 1.18479 1.20026 1.18574 1.20999 0.94804 0.88234 1.09852 1.20257 0.91256 1.01041 1.00330 1.66704 1.05453 1.33585 1.09710 1.21092 0.93118 0.98154 1.06090 1.20618 0.98971 0.91032 0.99341 1.19063 0.90433 0.95748 1.09949 1.20481 0.98385 0.94886 1.01406 0.92681 0.88906 0.92631 0.84747 0.87954 0.85311 0.90127 0.93298 0.91439 0.93226 0.86045 0.86129 0.92284 0.91836 0.92393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 9.81 101.05 0.99 1.36 16 2 O -0.32 -5.07 9.52 -19.44 -0.19 -5.25 16 3 C 0.12 2.15 6.65 -39.27 -0.26 1.89 16 4 C -0.20 -3.83 8.56 -39.03 -0.33 -4.17 16 5 C 0.05 1.11 5.87 -104.91 -0.62 0.50 16 6 C -0.01 -0.13 6.73 -82.75 -0.56 -0.69 16 7 C -0.12 -2.86 9.37 -39.55 -0.37 -3.23 16 8 C -0.14 -3.58 8.73 -39.01 -0.34 -3.92 16 9 C 0.07 1.89 5.59 -106.64 -0.60 1.29 16 10 C -0.43 -10.40 8.16 -37.84 -0.31 -10.70 16 11 H 0.09 2.01 6.84 -52.48 -0.36 1.65 16 12 C 0.07 1.62 5.23 -17.32 -0.09 1.53 16 13 N -0.78 -18.53 10.83 55.55 0.60 -17.93 16 14 Si 0.92 17.02 29.58 -169.99 -5.03 11.99 16 15 H -0.26 -4.81 7.11 56.52 0.40 -4.41 16 16 H -0.28 -5.01 7.11 56.52 0.40 -4.61 16 17 H -0.26 -4.78 7.11 56.52 0.40 -4.38 16 18 C 0.01 0.17 6.86 -81.81 -0.56 -0.39 16 19 C -0.07 -1.45 9.58 36.01 0.34 -1.10 16 20 N -0.45 -10.90 9.31 -5.39 -0.05 -10.95 16 21 C -0.17 -3.01 9.41 -39.16 -0.37 -3.38 16 22 C -0.08 -1.29 9.68 -39.66 -0.38 -1.68 16 23 C -0.15 -2.44 5.90 -104.36 -0.62 -3.06 16 24 C -0.09 -1.22 9.78 36.01 0.35 -0.86 16 25 H 0.05 0.70 7.67 -51.93 -0.40 0.30 16 26 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 27 H 0.06 0.71 7.65 -51.93 -0.40 0.31 16 28 H 0.13 2.64 5.76 -52.48 -0.30 2.34 16 29 H 0.10 2.11 6.18 -52.49 -0.32 1.78 16 30 H 0.13 3.24 6.18 -52.49 -0.32 2.92 16 31 H 0.29 6.21 8.29 -40.82 -0.34 5.87 16 32 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.07 1.33 6.76 -51.93 -0.35 0.98 16 34 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.12 2.06 6.18 -52.49 -0.32 1.73 16 36 H 0.12 1.54 8.06 -52.49 -0.42 1.11 16 37 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.06 0.81 7.52 -51.93 -0.39 0.42 16 39 H 0.06 0.63 8.08 -51.93 -0.42 0.21 16 LS Contribution 324.20 15.07 4.89 4.89 Total: -1.00 -27.57 324.20 -8.33 -35.90 By element: Atomic # 1 Polarization: 12.80 SS G_CDS: -4.84 Total: 7.96 kcal Atomic # 6 Polarization: -22.89 SS G_CDS: -3.72 Total: -26.61 kcal Atomic # 7 Polarization: -29.43 SS G_CDS: 0.55 Total: -28.87 kcal Atomic # 8 Polarization: -5.07 SS G_CDS: -0.19 Total: -5.25 kcal Atomic # 14 Polarization: 17.02 SS G_CDS: -5.03 Total: 11.99 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -27.57 -8.33 -35.90 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241034827.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.044 kcal (2) G-P(sol) polarization free energy of solvation -27.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds