Wall clock time and date at job start Tue Mar 31 2020 05:42:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35793 * 117.00033 * 2 1 4 4 C 1.38997 * 119.90796 * 359.97438 * 3 2 1 5 5 C 1.37732 * 120.08440 * 179.71863 * 4 3 2 6 6 C 1.50700 * 120.04513 * 180.27764 * 5 4 3 7 7 C 1.39729 * 119.91296 * 0.55762 * 5 4 3 8 8 C 1.47838 * 120.08846 * 179.73959 * 7 5 4 9 9 C 1.39975 * 119.45327 * 130.37783 * 8 7 5 10 10 C 1.36557 * 119.46305 * 180.26245 * 9 8 7 11 11 C 1.41326 * 118.42236 * 359.47267 * 10 9 8 12 12 C 1.41024 * 120.55281 * 180.25793 * 11 10 9 13 13 H 1.08001 * 120.00553 * 207.22760 * 12 11 10 14 14 C 1.39998 * 119.99748 * 27.22817 * 12 11 10 15 15 N 1.30815 * 120.00066 * 16.04740 * 14 12 11 16 16 Si 1.86797 * 120.00227 * 196.04521 * 14 12 11 17 17 H 1.48499 * 109.47056 * 89.99727 * 16 14 12 18 18 H 1.48497 * 109.47332 * 210.00298 * 16 14 12 19 19 H 1.48506 * 109.46893 * 330.00284 * 16 14 12 20 20 C 1.40960 * 118.90189 * 0.27876 * 11 10 9 21 21 N 1.31260 * 120.40504 * 359.97438 * 20 11 10 22 22 C 1.39698 * 119.82523 * 359.46902 * 7 5 4 23 23 C 1.37777 * 119.90740 * 0.25112 * 22 7 5 24 24 C 1.50697 * 119.95611 * 180.02562 * 23 22 7 25 25 H 1.09000 * 109.46940 * 299.99874 * 1 2 3 26 26 H 1.08995 * 109.47159 * 60.00367 * 1 2 3 27 27 H 1.09004 * 109.46642 * 180.02562 * 1 2 3 28 28 H 1.07996 * 119.95951 * 0.02562 * 4 3 2 29 29 H 1.09008 * 109.47149 * 264.85568 * 6 5 4 30 30 H 1.09000 * 109.47088 * 24.84732 * 6 5 4 31 31 H 1.08991 * 109.47477 * 144.85547 * 6 5 4 32 32 H 1.08004 * 120.26978 * 0.03444 * 9 8 7 33 33 H 1.08002 * 120.79152 * 179.75513 * 10 9 8 34 34 H 0.96999 * 120.00062 * 180.02562 * 15 14 12 35 35 H 1.07996 * 119.79659 * 179.97438 * 20 11 10 36 36 H 1.07993 * 120.05042 * 180.23300 * 22 7 5 37 37 H 1.08999 * 109.46940 * 89.99710 * 24 23 22 38 38 H 1.08996 * 109.47010 * 209.99898 * 24 23 22 39 39 H 1.09002 * 109.46862 * 330.00298 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0455 1.2099 0.0000 4 6 1.2866 2.3744 -0.0005 5 6 1.9081 3.6035 0.0053 6 6 1.0844 4.8655 0.0110 7 6 3.3033 3.6789 0.0000 8 6 3.9744 4.9962 0.0004 9 6 4.9941 5.2488 0.9255 10 6 5.6104 6.4674 0.9297 11 6 5.1989 7.4326 -0.0171 12 6 5.8085 8.7037 -0.0563 13 1 5.2580 9.5555 -0.4275 14 6 7.1274 8.8613 0.3858 15 7 7.8964 7.8138 0.5364 16 14 7.7893 10.5674 0.7606 17 1 7.5348 10.8948 2.1865 18 1 9.2506 10.6001 0.4982 19 1 7.1085 11.5636 -0.1051 20 6 4.1686 7.1040 -0.9212 21 7 3.6031 5.9201 -0.8822 22 6 4.0625 2.5062 0.0000 23 6 3.4332 1.2805 0.0000 24 6 4.2510 0.0148 0.0006 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 0.2082 2.3154 -0.0005 29 1 0.9632 5.2249 -1.0109 30 1 0.1048 4.6581 0.4417 31 1 1.5893 5.6263 0.6062 32 1 5.2884 4.4875 1.6328 33 1 6.3969 6.6867 1.6366 34 1 8.8101 7.9230 0.8431 35 1 3.8424 7.8308 -1.6504 36 1 5.1410 2.5602 -0.0003 37 1 4.4478 -0.2901 1.0284 38 1 3.7009 -0.7735 -0.5133 39 1 5.1960 0.1925 -0.5129 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241133406.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:34 Heat of formation + Delta-G solvation = -5.241741 kcal Electronic energy + Delta-G solvation = -21183.977905 eV Core-core repulsion = 18055.673654 eV Total energy + Delta-G solvation = -3128.304251 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.00077 -38.50905 -37.02324 -34.23517 -33.37324 -31.14246 -30.66847 -28.85018 -28.75820 -27.48207 -25.54460 -24.18165 -22.28821 -21.88837 -20.91801 -19.83346 -17.44313 -17.20358 -16.11415 -15.80761 -15.64160 -15.34260 -14.53160 -14.06710 -13.82099 -13.71122 -13.37166 -13.14689 -12.83786 -12.54390 -12.41818 -12.34648 -11.94837 -11.75122 -11.68643 -11.61073 -11.41498 -11.34193 -11.22912 -10.84192 -10.58661 -10.47722 -10.42108 -9.87825 -9.46245 -8.37497 -8.29416 -8.14239 -7.82848 -7.20991 -6.95034 -4.54801 1.71280 1.75950 2.60304 2.94196 2.97843 3.00361 3.12570 3.46666 3.77792 4.12467 4.52966 5.01534 5.09754 5.15800 5.21422 5.34044 5.42050 5.56320 5.59300 5.68670 5.82663 5.88468 5.96094 6.07636 6.11358 6.19068 6.25899 6.39991 6.58500 6.65772 6.69391 6.73944 6.80646 6.90123 7.01750 7.15797 7.20359 7.28116 7.60668 7.74692 7.81025 7.88739 8.35078 8.56892 8.64459 9.56741 9.95855 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.035135 B = 0.003652 C = 0.003384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.735870 B = 7665.370576 C = 8271.886169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.319 6.319 3 C 0.106 3.894 4 C -0.205 4.205 5 C -0.039 4.039 6 C -0.098 4.098 7 C -0.015 4.015 8 C 0.006 3.994 9 C -0.124 4.124 10 C -0.138 4.138 11 C 0.071 3.929 12 C -0.445 4.445 13 H 0.085 0.915 14 C 0.073 3.927 15 N -0.784 5.784 16 Si 0.914 3.086 17 H -0.266 1.266 18 H -0.276 1.276 19 H -0.260 1.260 20 C -0.020 4.020 21 N -0.446 5.446 22 C -0.080 4.080 23 C -0.124 4.124 24 C -0.099 4.099 25 H 0.051 0.949 26 H 0.052 0.948 27 H 0.093 0.907 28 H 0.121 0.879 29 H 0.074 0.926 30 H 0.047 0.953 31 H 0.069 0.931 32 H 0.098 0.902 33 H 0.123 0.877 34 H 0.285 0.715 35 H 0.128 0.872 36 H 0.126 0.874 37 H 0.062 0.938 38 H 0.064 0.936 39 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.759 -9.200 1.299 12.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.233 6.233 3 C 0.061 3.939 4 C -0.224 4.224 5 C -0.040 4.040 6 C -0.155 4.155 7 C -0.016 4.016 8 C -0.129 4.129 9 C -0.144 4.144 10 C -0.164 4.164 11 C 0.066 3.934 12 C -0.474 4.474 13 H 0.103 0.897 14 C -0.146 4.146 15 N -0.408 5.408 16 Si 0.738 3.262 17 H -0.191 1.191 18 H -0.201 1.201 19 H -0.183 1.183 20 C -0.184 4.184 21 N -0.153 5.153 22 C -0.098 4.098 23 C -0.125 4.125 24 C -0.156 4.156 25 H 0.070 0.930 26 H 0.070 0.930 27 H 0.112 0.888 28 H 0.139 0.861 29 H 0.093 0.907 30 H 0.066 0.934 31 H 0.088 0.912 32 H 0.116 0.884 33 H 0.140 0.860 34 H 0.096 0.904 35 H 0.145 0.855 36 H 0.144 0.856 37 H 0.081 0.919 38 H 0.083 0.917 39 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -8.078 -9.668 0.778 12.622 hybrid contribution 0.945 1.128 0.774 1.663 sum -7.133 -8.539 1.552 11.234 Atomic orbital electron populations 1.22952 0.79267 1.03148 1.01185 1.85973 1.20604 1.27398 1.89360 1.18765 0.91613 0.83682 0.99832 1.20909 0.99148 0.91782 1.10576 1.19773 0.93320 0.94178 0.96718 1.20645 0.97057 0.94927 1.02858 1.18438 0.91595 0.91878 0.99702 1.18684 1.00789 0.93082 1.00381 1.21269 0.96592 0.97507 0.99078 1.21253 1.01567 0.93650 0.99898 1.18576 0.91473 0.93674 0.89677 1.19588 0.96934 0.95075 1.35815 0.89712 1.26023 0.96919 0.99144 0.92532 1.69786 1.07674 1.31767 1.31597 0.86202 0.78256 0.81756 0.79974 1.19086 1.20116 1.18342 1.22472 1.01254 0.93457 1.01196 1.67100 1.26143 1.01584 1.20512 1.20977 0.99603 0.90186 0.99084 1.19024 0.90349 0.95756 1.07352 1.20534 0.98697 0.94592 1.01730 0.92993 0.92966 0.88841 0.86136 0.90703 0.93405 0.91171 0.88414 0.85966 0.90391 0.85478 0.85597 0.91941 0.91702 0.91962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 9.81 101.05 0.99 1.28 16 2 O -0.32 -4.48 9.52 -19.09 -0.18 -4.66 16 3 C 0.11 1.70 6.67 -39.04 -0.26 1.44 16 4 C -0.21 -3.29 8.65 -39.49 -0.34 -3.63 16 5 C -0.04 -0.72 5.90 -104.25 -0.62 -1.33 16 6 C -0.10 -1.69 8.75 36.01 0.32 -1.37 16 7 C -0.02 -0.31 5.59 -104.87 -0.59 -0.89 16 8 C 0.01 0.14 5.40 -82.76 -0.45 -0.31 16 9 C -0.12 -2.88 9.43 -39.54 -0.37 -3.25 16 10 C -0.14 -3.47 8.71 -39.01 -0.34 -3.81 16 11 C 0.07 1.80 5.56 -106.64 -0.59 1.21 16 12 C -0.44 -11.10 9.05 -37.87 -0.34 -11.44 16 13 H 0.08 2.00 7.90 -52.49 -0.41 1.59 16 14 C 0.07 1.74 5.17 -17.33 -0.09 1.65 16 15 N -0.78 -19.23 11.06 55.55 0.61 -18.61 16 16 Si 0.91 17.59 29.59 -169.99 -5.03 12.56 16 17 H -0.27 -5.07 7.11 56.52 0.40 -4.67 16 18 H -0.28 -5.22 7.11 56.52 0.40 -4.82 16 19 H -0.26 -4.93 7.11 56.52 0.40 -4.53 16 20 C -0.02 -0.49 10.97 -16.77 -0.18 -0.67 16 21 N -0.45 -10.68 8.87 -9.11 -0.08 -10.76 16 22 C -0.08 -1.46 9.11 -39.20 -0.36 -1.81 16 23 C -0.12 -2.05 5.89 -104.53 -0.62 -2.66 16 24 C -0.10 -1.32 9.78 36.00 0.35 -0.97 16 25 H 0.05 0.47 7.65 -51.93 -0.40 0.08 16 26 H 0.05 0.48 7.65 -51.93 -0.40 0.08 16 27 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.12 1.60 6.28 -52.49 -0.33 1.27 16 29 H 0.07 1.30 8.14 -51.92 -0.42 0.88 16 30 H 0.05 0.67 8.05 -51.93 -0.42 0.26 16 31 H 0.07 1.35 7.05 -51.93 -0.37 0.98 16 32 H 0.10 2.05 8.01 -52.48 -0.42 1.63 16 33 H 0.12 3.11 6.40 -52.49 -0.34 2.77 16 34 H 0.29 6.33 8.30 -40.82 -0.34 5.99 16 35 H 0.13 2.88 8.06 -52.49 -0.42 2.46 16 36 H 0.13 2.22 8.01 -52.49 -0.42 1.80 16 37 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.06 0.83 7.52 -51.93 -0.39 0.44 16 39 H 0.06 0.77 8.08 -51.93 -0.42 0.35 16 LS Contribution 328.18 15.07 4.95 4.95 Total: -1.00 -27.59 328.18 -8.35 -35.95 By element: Atomic # 1 Polarization: 12.29 SS G_CDS: -5.13 Total: 7.16 kcal Atomic # 6 Polarization: -23.09 SS G_CDS: -3.49 Total: -26.57 kcal Atomic # 7 Polarization: -29.90 SS G_CDS: 0.53 Total: -29.37 kcal Atomic # 8 Polarization: -4.48 SS G_CDS: -0.18 Total: -4.66 kcal Atomic # 14 Polarization: 17.59 SS G_CDS: -5.03 Total: 12.56 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -27.59 -8.35 -35.95 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241133406.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.704 kcal (2) G-P(sol) polarization free energy of solvation -27.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds