Wall clock time and date at job start Tue Mar 31 2020 05:42:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35847 * 116.99890 * 2 1 4 4 C 1.38878 * 119.93415 * 359.97438 * 3 2 1 5 5 C 1.37852 * 120.06435 * 179.97438 * 4 3 2 6 6 C 1.50704 * 120.03151 * 180.02562 * 5 4 3 7 7 C 1.39435 * 119.93368 * 0.02562 * 5 4 3 8 8 C 1.48307 * 120.06312 * 180.02562 * 7 5 4 9 9 C 1.38946 * 119.61487 * 187.63583 * 8 7 5 10 10 C 1.40818 * 118.76372 * 179.97438 * 9 8 7 11 11 C 1.41525 * 120.99231 * 179.97438 * 10 9 8 12 12 H 1.07999 * 119.99864 * 336.91701 * 11 10 9 13 13 C 1.40043 * 120.00432 * 156.91361 * 11 10 9 14 14 N 1.30740 * 119.99682 * 344.77195 * 13 11 10 15 15 Si 1.86796 * 120.00404 * 164.77509 * 13 11 10 16 16 H 1.48502 * 109.47363 * 59.99605 * 15 13 11 17 17 H 1.48491 * 109.47590 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.46769 * 300.00238 * 15 13 11 19 19 C 1.41159 * 118.02562 * 0.02562 * 10 9 8 20 20 C 1.37714 * 119.08611 * 359.97438 * 19 10 9 21 21 N 1.31942 * 121.15770 * 359.74174 * 20 19 10 22 22 C 1.39391 * 119.86925 * 359.73105 * 7 5 4 23 23 C 1.37898 * 119.93098 * 0.52054 * 22 7 5 24 24 C 1.50700 * 119.96762 * 179.75104 * 23 22 7 25 25 H 1.08999 * 109.47036 * 299.99957 * 1 2 3 26 26 H 1.08999 * 109.47259 * 60.00023 * 1 2 3 27 27 H 1.08996 * 109.47346 * 179.97438 * 1 2 3 28 28 H 1.08000 * 119.96777 * 0.02616 * 4 3 2 29 29 H 1.09000 * 109.47174 * 97.32640 * 6 5 4 30 30 H 1.09005 * 109.47010 * 217.32490 * 6 5 4 31 31 H 1.08994 * 109.47159 * 337.32409 * 6 5 4 32 32 H 1.08006 * 120.62120 * 359.95643 * 9 8 7 33 33 H 0.97000 * 119.99693 * 179.97438 * 14 13 11 34 34 H 1.08002 * 120.45869 * 179.97438 * 19 10 9 35 35 H 1.07996 * 119.42775 * 180.02562 * 20 19 10 36 36 H 1.08002 * 120.03795 * 180.29097 * 22 7 5 37 37 H 1.08997 * 109.47177 * 269.72624 * 24 23 22 38 38 H 1.09008 * 109.46642 * 149.72311 * 24 23 22 39 39 H 1.08999 * 109.47034 * 29.73140 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0457 1.2104 0.0000 4 6 1.2880 2.3743 -0.0005 5 6 1.9110 3.6040 0.0000 6 6 1.0880 4.8664 0.0000 7 6 3.3034 3.6785 0.0005 8 6 3.9766 5.0000 0.0017 9 6 5.3551 5.0684 -0.1583 10 6 5.9758 6.3324 -0.1550 11 6 7.3766 6.4569 -0.3136 12 1 8.0234 5.6267 -0.0710 13 6 7.9241 7.6564 -0.7853 14 7 7.1548 8.5463 -1.3559 15 14 9.7535 7.9850 -0.5994 16 1 10.5206 6.9344 -1.3158 17 1 10.0786 9.3149 -1.1745 18 1 10.1158 7.9671 0.8407 19 6 5.1594 7.4717 0.0124 20 6 3.8008 7.3053 0.1640 21 7 3.2543 6.1045 0.1501 22 6 4.0612 2.5086 0.0062 23 6 3.4323 1.2814 0.0004 24 6 4.2509 0.0161 0.0009 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 0.2096 2.3159 -0.0005 29 1 0.9990 5.2421 1.0193 30 1 1.5745 5.6173 -0.6228 31 1 0.0955 4.6531 -0.3966 32 1 5.9399 4.1688 -0.2826 33 1 7.5340 9.3773 -1.6823 34 1 5.5942 8.4603 0.0215 35 1 3.1709 8.1732 0.2921 36 1 5.1398 2.5632 0.0114 37 1 4.4486 -0.2891 -1.0267 38 1 3.7007 -0.7723 0.5147 39 1 5.1952 0.1945 0.5151 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241133825.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:36 Heat of formation + Delta-G solvation = 6.378089 kcal Electronic energy + Delta-G solvation = -21286.039862 eV Core-core repulsion = 18158.239484 eV Total energy + Delta-G solvation = -3127.800377 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.08453 -38.55514 -37.01388 -34.28161 -33.36410 -31.28792 -30.72747 -28.72183 -28.20744 -27.24457 -25.92452 -24.40556 -22.68261 -21.66060 -20.76871 -19.90245 -17.44706 -17.16952 -16.14368 -15.67624 -15.57053 -14.95000 -14.66275 -14.22948 -13.73173 -13.60732 -13.41331 -13.35322 -12.95504 -12.56127 -12.43826 -12.26336 -11.99527 -11.87096 -11.61963 -11.49539 -11.33663 -11.28263 -10.97412 -10.89842 -10.56372 -10.44876 -10.30512 -9.79290 -9.46526 -8.48050 -8.13709 -8.05706 -7.81735 -6.99599 -6.83321 -4.64121 1.52659 1.73263 2.72469 2.90814 2.99359 3.01875 3.22557 3.42096 3.81988 4.16573 4.66077 4.99213 5.07134 5.13115 5.13859 5.27506 5.40752 5.59502 5.61538 5.67284 5.77958 5.87387 5.88695 6.04418 6.16969 6.18753 6.40485 6.50566 6.62305 6.70050 6.74213 6.75048 6.86558 7.06561 7.08547 7.20026 7.26425 7.33566 7.50238 7.65468 7.83119 8.08568 8.41675 8.69988 8.70498 9.52148 10.02966 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.026324 B = 0.004053 C = 0.003554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.398607 B = 6906.563629 C = 7876.603340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.318 6.318 3 C 0.117 3.883 4 C -0.214 4.214 5 C -0.022 4.022 6 C -0.105 4.105 7 C -0.051 4.051 8 C 0.159 3.841 9 C -0.256 4.256 10 C 0.127 3.873 11 C -0.455 4.455 12 H 0.081 0.919 13 C 0.077 3.923 14 N -0.787 5.787 15 Si 0.914 3.086 16 H -0.264 1.264 17 H -0.277 1.277 18 H -0.262 1.262 19 C -0.210 4.210 20 C 0.081 3.919 21 N -0.557 5.557 22 C -0.069 4.069 23 C -0.130 4.130 24 C -0.099 4.099 25 H 0.052 0.948 26 H 0.052 0.948 27 H 0.094 0.906 28 H 0.122 0.878 29 H 0.068 0.932 30 H 0.108 0.892 31 H 0.034 0.966 32 H 0.103 0.897 33 H 0.284 0.716 34 H 0.129 0.871 35 H 0.122 0.878 36 H 0.133 0.867 37 H 0.063 0.937 38 H 0.064 0.936 39 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.442 -9.645 1.608 12.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.232 6.232 3 C 0.072 3.928 4 C -0.233 4.233 5 C -0.023 4.023 6 C -0.161 4.161 7 C -0.052 4.052 8 C 0.025 3.975 9 C -0.279 4.279 10 C 0.119 3.881 11 C -0.486 4.486 12 H 0.099 0.901 13 C -0.143 4.143 14 N -0.412 5.412 15 Si 0.738 3.262 16 H -0.188 1.188 17 H -0.202 1.202 18 H -0.187 1.187 19 C -0.232 4.232 20 C -0.070 4.070 21 N -0.272 5.272 22 C -0.088 4.088 23 C -0.131 4.131 24 C -0.155 4.155 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.112 0.888 28 H 0.140 0.860 29 H 0.087 0.913 30 H 0.126 0.874 31 H 0.053 0.947 32 H 0.121 0.879 33 H 0.095 0.905 34 H 0.147 0.853 35 H 0.139 0.861 36 H 0.151 0.849 37 H 0.081 0.919 38 H 0.083 0.917 39 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -8.270 -9.642 1.585 12.801 hybrid contribution 1.493 0.528 -0.134 1.589 sum -6.776 -9.114 1.451 11.450 Atomic orbital electron populations 1.22970 0.79142 1.03234 1.01265 1.85996 1.20722 1.27348 1.89154 1.18806 0.91684 0.83758 0.98574 1.20989 0.99318 0.91799 1.11172 1.19876 0.93266 0.94631 0.94529 1.21073 0.96078 0.95448 1.03548 1.18607 0.92102 0.91953 1.02556 1.19061 0.90101 0.90321 0.97980 1.21831 0.93692 0.97866 1.14476 1.17761 0.93578 0.90488 0.86285 1.19590 0.91913 0.98717 1.38347 0.90085 1.25976 1.00935 0.95182 0.92167 1.69747 1.38032 1.07582 1.25854 0.86271 0.81675 0.78359 0.79925 1.18817 1.20181 1.18670 1.22323 0.93589 1.00543 1.06734 1.22041 0.93259 0.93710 0.98039 1.67574 1.38716 0.97907 1.23039 1.21006 1.00056 0.90101 0.97590 1.19031 0.90364 0.95808 1.07900 1.20534 0.98688 0.94460 1.01847 0.92912 0.92897 0.88759 0.85979 0.91334 0.87398 0.94709 0.87870 0.90509 0.85334 0.86059 0.84915 0.91857 0.91685 0.91861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 9.81 101.05 0.99 1.27 16 2 O -0.32 -4.42 9.52 -19.26 -0.18 -4.60 16 3 C 0.12 1.86 6.66 -39.12 -0.26 1.60 16 4 C -0.21 -3.43 8.65 -39.49 -0.34 -3.77 16 5 C -0.02 -0.41 5.91 -104.32 -0.62 -1.02 16 6 C -0.11 -1.83 8.54 36.01 0.31 -1.52 16 7 C -0.05 -1.04 5.87 -104.88 -0.62 -1.66 16 8 C 0.16 3.68 6.65 -83.04 -0.55 3.13 16 9 C -0.26 -6.22 9.23 -38.34 -0.35 -6.57 16 10 C 0.13 3.30 5.62 -106.56 -0.60 2.71 16 11 C -0.45 -11.66 9.13 -37.65 -0.34 -12.01 16 12 H 0.08 1.98 7.89 -52.49 -0.41 1.57 16 13 C 0.08 1.86 5.24 -17.34 -0.09 1.76 16 14 N -0.79 -19.53 10.78 55.55 0.60 -18.93 16 15 Si 0.91 17.94 29.59 -169.99 -5.03 12.91 16 16 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16 17 H -0.28 -5.29 7.11 56.52 0.40 -4.89 16 18 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16 19 C -0.21 -5.30 8.80 -38.67 -0.34 -5.64 16 20 C 0.08 1.88 11.15 -17.70 -0.20 1.69 16 21 N -0.56 -12.87 6.20 -9.95 -0.06 -12.94 16 22 C -0.07 -1.25 9.04 -39.28 -0.36 -1.61 16 23 C -0.13 -2.13 5.89 -104.52 -0.62 -2.75 16 24 C -0.10 -1.31 9.79 36.01 0.35 -0.95 16 25 H 0.05 0.48 7.66 -51.93 -0.40 0.08 16 26 H 0.05 0.48 7.65 -51.93 -0.40 0.08 16 27 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.12 1.63 6.27 -52.49 -0.33 1.30 16 29 H 0.07 1.20 8.13 -51.93 -0.42 0.78 16 30 H 0.11 2.13 5.71 -51.93 -0.30 1.83 16 31 H 0.03 0.51 8.03 -51.93 -0.42 0.09 16 32 H 0.10 2.32 6.25 -52.48 -0.33 2.00 16 33 H 0.28 6.40 8.29 -40.82 -0.34 6.06 16 34 H 0.13 3.31 6.08 -52.49 -0.32 2.99 16 35 H 0.12 2.46 8.06 -52.49 -0.42 2.04 16 36 H 0.13 2.31 6.24 -52.49 -0.33 1.98 16 37 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.06 0.82 7.52 -51.92 -0.39 0.43 16 39 H 0.06 0.77 8.08 -51.93 -0.42 0.35 16 LS Contribution 321.51 15.07 4.85 4.85 Total: -1.00 -27.90 321.51 -8.32 -36.22 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: -4.86 Total: 7.84 kcal Atomic # 6 Polarization: -21.71 SS G_CDS: -3.63 Total: -25.34 kcal Atomic # 7 Polarization: -32.41 SS G_CDS: 0.54 Total: -31.87 kcal Atomic # 8 Polarization: -4.42 SS G_CDS: -0.18 Total: -4.60 kcal Atomic # 14 Polarization: 17.94 SS G_CDS: -5.03 Total: 12.91 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -27.90 -8.32 -36.22 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241133825.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.597 kcal (2) G-P(sol) polarization free energy of solvation -27.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.218 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds