Wall clock time and date at job start Tue Mar 31 2020 05:42:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35777 * 117.00348 * 2 1 4 4 C 1.39006 * 119.90674 * 359.97438 * 3 2 1 5 5 C 1.37710 * 120.09930 * 179.74028 * 4 3 2 6 6 C 1.50690 * 120.05242 * 180.30168 * 5 4 3 7 7 C 1.39807 * 119.89863 * 0.55399 * 5 4 3 8 8 C 1.47682 * 120.09436 * 179.72095 * 7 5 4 9 9 N 1.32647 * 119.99375 * 309.20427 * 8 7 5 10 10 C 1.31729 * 121.70655 * 179.97438 * 9 8 7 11 11 C 1.38877 * 121.51580 * 0.02562 * 10 9 8 12 12 C 1.36878 * 119.81716 * 359.97438 * 11 10 9 13 13 C 1.41124 * 118.39717 * 0.25218 * 12 11 10 14 14 C 1.40844 * 120.72108 * 179.75311 * 13 12 11 15 15 H 1.08000 * 120.00398 * 149.07896 * 14 13 12 16 16 C 1.40046 * 119.99791 * 329.07186 * 14 13 12 17 17 N 1.30787 * 120.00297 * 348.75239 * 16 14 13 18 18 Si 1.86799 * 119.99782 * 168.74877 * 16 14 13 19 19 H 1.48507 * 109.46868 * 90.00364 * 18 16 14 20 20 H 1.48498 * 109.47102 * 209.99880 * 18 16 14 21 21 H 1.48492 * 109.47377 * 330.00243 * 18 16 14 22 22 C 1.39764 * 119.81409 * 359.44388 * 7 5 4 23 23 C 1.37754 * 119.90532 * 0.28051 * 22 7 5 24 24 C 1.50696 * 119.95559 * 180.02562 * 23 22 7 25 25 H 1.08994 * 109.47148 * 59.99193 * 1 2 3 26 26 H 1.08998 * 109.47059 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46397 * 299.99506 * 1 2 3 28 28 H 1.08003 * 119.95034 * 359.97438 * 4 3 2 29 29 H 1.09004 * 109.46940 * 264.70757 * 6 5 4 30 30 H 1.09003 * 109.47294 * 24.70412 * 6 5 4 31 31 H 1.08995 * 109.47507 * 144.71171 * 6 5 4 32 32 H 1.08000 * 119.23672 * 179.97438 * 10 9 8 33 33 H 1.08006 * 120.09278 * 179.97438 * 11 10 9 34 34 H 1.07995 * 120.80178 * 179.97438 * 12 11 10 35 35 H 0.96997 * 120.00523 * 179.97438 * 17 16 14 36 36 H 1.07998 * 120.04977 * 180.25266 * 22 7 5 37 37 H 1.09001 * 109.47146 * 89.99871 * 24 23 22 38 38 H 1.09002 * 109.47291 * 210.00063 * 24 23 22 39 39 H 1.09007 * 109.46808 * 329.99719 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0455 1.2097 0.0000 4 6 1.2866 2.3744 -0.0005 5 6 1.9077 3.6034 0.0049 6 6 1.0840 4.8652 0.0111 7 6 3.3037 3.6788 -0.0008 8 6 3.9743 4.9946 -0.0013 9 7 3.6247 5.9167 -0.8884 10 6 4.2000 7.1013 -0.9189 11 6 5.2035 7.4444 -0.0223 12 6 5.6128 6.5398 0.9199 13 6 4.9961 5.2706 0.9443 14 6 5.3829 4.3008 1.8895 15 1 4.6617 3.5845 2.2544 16 6 6.7029 4.2651 2.3561 17 7 7.6256 4.9774 1.7630 18 14 7.1456 3.2003 3.8256 19 1 7.5377 1.8471 3.3561 20 1 8.2792 3.8170 4.5602 21 1 5.9719 3.0901 4.7286 22 6 4.0630 2.5053 -0.0002 23 6 3.4335 1.2800 0.0002 24 6 4.2510 0.0141 0.0014 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3632 0.5138 0.8901 28 1 0.2082 2.3152 -0.0014 29 1 0.9642 5.2260 -1.0105 30 1 0.1038 4.6571 0.4402 31 1 1.5880 5.6253 0.6081 32 1 3.8844 7.8221 -1.6588 33 1 5.6597 8.4223 -0.0683 34 1 6.3920 6.7896 1.6246 35 1 8.5398 4.9531 2.0864 36 1 5.1416 2.5591 -0.0005 37 1 4.4476 -0.2905 1.0294 38 1 3.7009 -0.7743 -0.5123 39 1 5.1961 0.1914 -0.5121 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241133971.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:39 Heat of formation + Delta-G solvation = -2.330260 kcal Electronic energy + Delta-G solvation = -22013.969392 eV Core-core repulsion = 18885.791393 eV Total energy + Delta-G solvation = -3128.178000 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.82420 -38.49363 -36.79930 -34.15736 -33.25006 -31.22918 -30.60340 -28.58732 -28.37562 -27.24020 -25.68381 -24.14860 -22.31815 -21.68500 -20.83177 -19.54763 -17.36386 -17.02529 -15.94217 -15.76336 -15.48376 -15.29896 -14.40359 -14.07249 -13.75052 -13.55712 -13.20536 -13.01093 -12.68488 -12.47266 -12.25915 -12.16674 -11.90499 -11.65081 -11.46563 -11.45121 -11.38811 -11.20260 -11.11396 -10.86891 -10.57167 -10.27582 -10.22180 -9.78665 -9.42706 -8.37494 -8.06694 -7.99200 -7.77795 -7.10677 -6.83848 -4.52222 1.90114 2.02760 2.63907 2.94450 3.00252 3.05591 3.15873 3.64062 3.83246 4.38462 4.57350 5.16430 5.28372 5.30688 5.38327 5.47311 5.54401 5.62125 5.77570 5.88243 5.98023 6.11832 6.16348 6.21954 6.25618 6.33883 6.38136 6.49410 6.61694 6.68171 6.81363 6.91124 6.94926 6.98233 7.05551 7.27711 7.41420 7.50268 7.69536 7.80163 7.90050 7.94032 8.38721 8.61332 8.68128 9.56348 10.02882 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.013742 B = 0.007258 C = 0.005185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2037.112472 B = 3856.712042 C = 5398.826287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.320 6.320 3 C 0.107 3.893 4 C -0.212 4.212 5 C -0.045 4.045 6 C -0.096 4.096 7 C -0.008 4.008 8 C 0.025 3.975 9 N -0.451 5.451 10 C -0.032 4.032 11 C -0.151 4.151 12 C -0.126 4.126 13 C 0.086 3.914 14 C -0.441 4.441 15 H 0.086 0.914 16 C 0.075 3.925 17 N -0.793 5.793 18 Si 0.907 3.093 19 H -0.266 1.266 20 H -0.275 1.275 21 H -0.259 1.259 22 C -0.050 4.050 23 C -0.131 4.131 24 C -0.097 4.097 25 H 0.050 0.950 26 H 0.091 0.909 27 H 0.051 0.949 28 H 0.118 0.882 29 H 0.071 0.929 30 H 0.046 0.954 31 H 0.067 0.933 32 H 0.120 0.880 33 H 0.097 0.903 34 H 0.123 0.877 35 H 0.284 0.716 36 H 0.135 0.865 37 H 0.061 0.939 38 H 0.061 0.939 39 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.160 -5.669 -0.415 9.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.234 6.234 3 C 0.062 3.938 4 C -0.230 4.230 5 C -0.046 4.046 6 C -0.153 4.153 7 C -0.009 4.009 8 C -0.114 4.114 9 N -0.159 5.159 10 C -0.193 4.193 11 C -0.172 4.172 12 C -0.152 4.152 13 C 0.082 3.918 14 C -0.471 4.471 15 H 0.104 0.896 16 C -0.143 4.143 17 N -0.418 5.418 18 Si 0.731 3.269 19 H -0.191 1.191 20 H -0.200 1.200 21 H -0.183 1.183 22 C -0.069 4.069 23 C -0.132 4.132 24 C -0.154 4.154 25 H 0.069 0.931 26 H 0.110 0.890 27 H 0.069 0.931 28 H 0.136 0.864 29 H 0.090 0.910 30 H 0.065 0.935 31 H 0.086 0.914 32 H 0.137 0.863 33 H 0.116 0.884 34 H 0.141 0.859 35 H 0.095 0.905 36 H 0.153 0.847 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -7.457 -5.988 -1.004 9.616 hybrid contribution 0.849 0.091 1.262 1.524 sum -6.608 -5.897 0.259 8.861 Atomic orbital electron populations 1.22922 0.79534 1.02936 1.01083 1.85968 1.20392 1.27611 1.89436 1.18777 0.91621 0.83520 0.99861 1.20805 0.98862 0.91802 1.11569 1.19756 0.93376 0.94038 0.97393 1.20609 0.97104 0.95108 1.02454 1.18212 0.91054 0.91799 0.99814 1.19448 1.02463 0.92637 0.96805 1.67118 1.25910 1.01270 1.21565 1.21664 1.00148 0.94728 1.02710 1.21425 0.98656 0.99177 0.97929 1.21358 1.01654 0.92594 0.99607 1.18349 0.90124 0.92431 0.90910 1.19508 0.95111 1.13117 1.19351 0.89617 1.25951 0.96217 0.95370 0.96797 1.69744 1.02780 1.33586 1.35684 0.86292 0.79091 0.80300 0.81180 1.19054 1.20022 1.18261 1.21087 1.00420 0.89678 0.95729 1.19054 0.90188 0.95889 1.08024 1.20514 0.98646 0.94537 1.01699 0.93104 0.89021 0.93072 0.86423 0.91028 0.93486 0.91446 0.86271 0.88444 0.85903 0.90537 0.84673 0.92019 0.91966 0.92014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 9.81 101.05 0.99 1.34 16 2 O -0.32 -5.03 9.52 -19.04 -0.18 -5.21 16 3 C 0.11 1.92 6.67 -39.02 -0.26 1.66 16 4 C -0.21 -3.75 8.65 -39.49 -0.34 -4.09 16 5 C -0.04 -0.89 5.91 -104.23 -0.62 -1.51 16 6 C -0.10 -1.75 8.80 36.00 0.32 -1.43 16 7 C -0.01 -0.17 5.06 -104.88 -0.53 -0.70 16 8 C 0.02 0.61 5.41 -82.25 -0.44 0.16 16 9 N -0.45 -10.79 8.99 -9.18 -0.08 -10.88 16 10 C -0.03 -0.72 11.16 -17.36 -0.19 -0.91 16 11 C -0.15 -3.41 10.03 -39.84 -0.40 -3.81 16 12 C -0.13 -3.13 8.70 -38.98 -0.34 -3.47 16 13 C 0.09 2.21 5.52 -106.41 -0.59 1.62 16 14 C -0.44 -11.01 7.00 -37.92 -0.27 -11.27 16 15 H 0.09 2.13 6.87 -52.49 -0.36 1.77 16 16 C 0.08 1.78 5.25 -17.32 -0.09 1.69 16 17 N -0.79 -19.36 11.06 55.55 0.61 -18.74 16 18 Si 0.91 18.01 29.58 -169.99 -5.03 12.98 16 19 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 20 H -0.28 -5.34 7.11 56.52 0.40 -4.93 16 21 H -0.26 -5.17 7.11 56.52 0.40 -4.76 16 22 C -0.05 -1.07 7.73 -39.19 -0.30 -1.37 16 23 C -0.13 -2.48 5.89 -104.53 -0.62 -3.10 16 24 C -0.10 -1.55 9.78 36.00 0.35 -1.20 16 25 H 0.05 0.53 7.65 -51.93 -0.40 0.13 16 26 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.05 0.54 7.65 -51.93 -0.40 0.14 16 28 H 0.12 1.74 6.28 -52.48 -0.33 1.41 16 29 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 30 H 0.05 0.71 8.05 -51.93 -0.42 0.29 16 31 H 0.07 1.35 7.09 -51.93 -0.37 0.99 16 32 H 0.12 2.33 8.06 -52.49 -0.42 1.91 16 33 H 0.10 1.90 8.06 -52.48 -0.42 1.48 16 34 H 0.12 3.10 6.51 -52.49 -0.34 2.75 16 35 H 0.28 6.32 8.30 -40.82 -0.34 5.99 16 36 H 0.14 3.01 7.32 -52.49 -0.38 2.62 16 37 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.06 0.92 7.52 -51.93 -0.39 0.53 16 39 H 0.06 0.93 8.08 -51.92 -0.42 0.51 16 LS Contribution 323.68 15.07 4.88 4.88 Total: -1.00 -27.44 323.68 -8.18 -35.62 By element: Atomic # 1 Polarization: 12.82 SS G_CDS: -5.05 Total: 7.77 kcal Atomic # 6 Polarization: -23.09 SS G_CDS: -3.33 Total: -26.41 kcal Atomic # 7 Polarization: -30.15 SS G_CDS: 0.53 Total: -29.62 kcal Atomic # 8 Polarization: -5.03 SS G_CDS: -0.18 Total: -5.21 kcal Atomic # 14 Polarization: 18.01 SS G_CDS: -5.03 Total: 12.98 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -27.44 -8.18 -35.62 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241133971.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.287 kcal (2) G-P(sol) polarization free energy of solvation -27.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds