Wall clock time and date at job start Tue Mar 31 2020 05:42:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35830 * 117.00022 * 2 1 4 4 C 1.38905 * 119.92929 * 0.24873 * 3 2 1 5 5 C 1.37835 * 120.06857 * 180.25957 * 4 3 2 6 6 C 1.50701 * 120.03359 * 179.76631 * 5 4 3 7 7 C 1.39478 * 119.93045 * 359.74791 * 5 4 3 8 8 C 1.48224 * 120.06898 * 179.97438 * 7 5 4 9 9 C 1.39963 * 119.61012 * 130.32683 * 8 7 5 10 10 C 1.38664 * 119.45942 * 179.97438 * 9 8 7 11 11 C 1.38314 * 118.69582 * 0.02562 * 10 9 8 12 12 C 1.40675 * 119.19677 * 359.97438 * 11 10 9 13 13 C 1.41364 * 119.76578 * 180.02562 * 12 11 10 14 14 H 1.08007 * 119.99740 * 340.20534 * 13 12 11 15 15 C 1.40008 * 120.00350 * 160.21382 * 13 12 11 16 16 N 1.30753 * 120.00340 * 163.71848 * 15 13 12 17 17 Si 1.86801 * 119.99687 * 343.71953 * 15 13 12 18 18 H 1.48497 * 109.47301 * 85.56082 * 17 15 13 19 19 H 1.48503 * 109.47136 * 205.55852 * 17 15 13 20 20 H 1.48504 * 109.47194 * 325.55657 * 17 15 13 21 21 N 1.32246 * 119.61354 * 310.05478 * 8 7 5 22 22 C 1.39447 * 119.86335 * 359.97438 * 7 5 4 23 23 C 1.37876 * 119.92839 * 0.02562 * 22 7 5 24 24 C 1.50699 * 119.96609 * 179.97438 * 23 22 7 25 25 H 1.09003 * 109.46857 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46859 * 300.00345 * 1 2 3 27 27 H 1.09000 * 109.47055 * 60.00414 * 1 2 3 28 28 H 1.07999 * 119.96583 * 0.02562 * 4 3 2 29 29 H 1.08995 * 109.47275 * 264.53569 * 6 5 4 30 30 H 1.09003 * 109.46929 * 24.54003 * 6 5 4 31 31 H 1.08999 * 109.46841 * 144.53247 * 6 5 4 32 32 H 1.07993 * 120.27110 * 0.02613 * 9 8 7 33 33 H 1.07998 * 120.65236 * 180.02562 * 10 9 8 34 34 H 1.07999 * 120.40172 * 180.02562 * 11 10 9 35 35 H 0.96996 * 119.99746 * 179.97438 * 16 15 13 36 36 H 1.07997 * 120.03723 * 180.02562 * 22 7 5 37 37 H 1.08994 * 109.47095 * 90.00114 * 24 23 22 38 38 H 1.08998 * 109.46958 * 329.99964 * 24 23 22 39 39 H 1.09000 * 109.46822 * 210.00040 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0456 1.2103 0.0000 4 6 1.2877 2.3743 0.0052 5 6 1.9104 3.6039 -0.0002 6 6 1.0873 4.8663 0.0002 7 6 3.3032 3.6786 -0.0056 8 6 3.9761 4.9993 -0.0119 9 6 4.9951 5.2607 0.9112 10 6 5.6228 6.4971 0.9021 11 6 5.2188 7.4402 -0.0254 12 6 4.1886 7.1181 -0.9276 13 6 3.7666 8.0727 -1.8809 14 1 3.9832 9.1199 -1.7290 15 6 3.0677 7.6609 -3.0221 16 7 2.4055 8.5350 -3.7341 17 14 3.0814 5.8626 -3.5273 18 1 2.0115 5.1354 -2.7981 19 1 2.8435 5.7573 -4.9894 20 1 4.4001 5.2654 -3.1962 21 7 3.6102 5.9149 -0.8933 22 6 4.0613 2.5082 -0.0049 23 6 3.4325 1.2813 0.0005 24 6 4.2509 0.0159 0.0006 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 0.2093 2.3158 0.0097 29 1 0.9667 5.2217 -1.0231 30 1 0.1075 4.6610 0.4315 31 1 1.5924 5.6291 0.5927 32 1 5.2907 4.5054 1.6242 33 1 6.4117 6.7193 1.6055 34 1 5.6891 8.4119 -0.0572 35 1 1.9216 8.2497 -4.5249 36 1 5.1399 2.5628 -0.0087 37 1 4.4521 -0.2866 1.0282 38 1 5.1936 0.1929 -0.5172 39 1 3.6990 -0.7738 -0.5093 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241134441.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:41 Heat of formation + Delta-G solvation = -5.525981 kcal Electronic energy + Delta-G solvation = -21893.908553 eV Core-core repulsion = 18765.591976 eV Total energy + Delta-G solvation = -3128.316577 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.16869 -38.72162 -37.16767 -33.80386 -33.51892 -31.48727 -31.11522 -28.97710 -28.79001 -27.47668 -25.67452 -24.51640 -22.78585 -21.80696 -20.90354 -19.86329 -17.66748 -17.28800 -16.24611 -15.87032 -15.72859 -14.90280 -14.70538 -14.42543 -14.01093 -13.82839 -13.48990 -13.04349 -12.89738 -12.78873 -12.61983 -12.47578 -12.03639 -11.98256 -11.71546 -11.56207 -11.51562 -11.21915 -10.85031 -10.70625 -10.60736 -10.58538 -10.24513 -10.07971 -9.26403 -8.64335 -8.41542 -8.09272 -7.88207 -7.36779 -6.94411 -4.68778 1.51432 1.62773 2.51969 2.63864 3.35428 3.39550 3.46909 3.54730 3.99540 4.30451 4.51096 4.93469 4.98995 5.05482 5.10995 5.16127 5.36974 5.46204 5.47800 5.58025 5.70811 5.78479 5.81007 5.91113 6.01115 6.08560 6.23161 6.28751 6.31047 6.47711 6.52144 6.55902 6.60345 6.77801 6.93654 7.01847 7.05507 7.16218 7.33557 7.48144 7.56121 7.81737 8.12814 8.52306 8.59581 9.53300 10.00079 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.018267 B = 0.006083 C = 0.005235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1532.490804 B = 4601.796087 C = 5347.257608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.318 6.318 3 C 0.122 3.878 4 C -0.211 4.211 5 C -0.017 4.017 6 C -0.109 4.109 7 C -0.058 4.058 8 C 0.204 3.796 9 C -0.292 4.292 10 C -0.051 4.051 11 C -0.254 4.254 12 C 0.249 3.751 13 C -0.420 4.420 14 H 0.096 0.904 15 C 0.094 3.906 16 N -0.799 5.799 17 Si 0.970 3.030 18 H -0.259 1.259 19 H -0.322 1.322 20 H -0.270 1.270 21 N -0.549 5.549 22 C -0.063 4.063 23 C -0.131 4.131 24 C -0.098 4.098 25 H 0.095 0.905 26 H 0.053 0.947 27 H 0.054 0.946 28 H 0.125 0.875 29 H 0.085 0.915 30 H 0.051 0.949 31 H 0.072 0.928 32 H 0.103 0.897 33 H 0.104 0.896 34 H 0.107 0.893 35 H 0.288 0.712 36 H 0.130 0.870 37 H 0.063 0.937 38 H 0.062 0.938 39 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.345 -13.496 5.998 14.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.231 6.231 3 C 0.077 3.923 4 C -0.230 4.230 5 C -0.018 4.018 6 C -0.166 4.166 7 C -0.059 4.059 8 C 0.063 3.937 9 C -0.315 4.315 10 C -0.074 4.074 11 C -0.277 4.277 12 C 0.125 3.875 13 C -0.451 4.451 14 H 0.114 0.886 15 C -0.129 4.129 16 N -0.422 5.422 17 Si 0.802 3.198 18 H -0.184 1.184 19 H -0.253 1.253 20 H -0.196 1.196 21 N -0.267 5.267 22 C -0.082 4.082 23 C -0.132 4.132 24 C -0.155 4.155 25 H 0.114 0.886 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.143 0.857 29 H 0.104 0.896 30 H 0.070 0.930 31 H 0.091 0.909 32 H 0.121 0.879 33 H 0.122 0.878 34 H 0.125 0.875 35 H 0.098 0.902 36 H 0.148 0.852 37 H 0.082 0.918 38 H 0.081 0.919 39 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -3.048 -13.648 5.215 14.925 hybrid contribution 0.374 -0.165 0.331 0.526 sum -2.674 -13.813 5.546 15.123 Atomic orbital electron populations 1.23000 0.78943 1.03375 1.01397 1.85993 1.20892 1.27196 1.89040 1.18796 0.91659 0.83791 0.98016 1.20967 0.99538 0.91621 1.10835 1.19779 0.93044 0.94632 0.94308 1.20836 0.97240 0.94507 1.03976 1.18576 0.92197 0.92012 1.03088 1.19291 0.91677 0.91001 0.91764 1.21126 1.04916 0.99056 1.06448 1.20907 0.96995 0.93358 0.96180 1.21745 1.03042 1.00441 1.02441 1.18545 0.88285 0.88648 0.92034 1.19422 1.28370 0.95243 1.02016 0.88588 1.26234 0.90086 1.01657 0.94914 1.69667 1.20540 1.38039 1.13933 0.85135 0.81534 0.80479 0.72700 1.18438 1.25320 1.19586 1.67320 1.30852 1.03319 1.25195 1.20889 0.99661 0.89992 0.97661 1.19028 0.90421 0.95790 1.07958 1.20528 0.98676 0.94441 1.01817 0.88631 0.92810 0.92766 0.85672 0.89643 0.93024 0.90895 0.87922 0.87825 0.87467 0.90219 0.85242 0.91822 0.91903 0.91558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 9.81 101.05 0.99 1.27 16 2 O -0.32 -4.36 9.52 -19.21 -0.18 -4.54 16 3 C 0.12 1.94 6.66 -39.10 -0.26 1.67 16 4 C -0.21 -3.43 8.65 -39.48 -0.34 -3.78 16 5 C -0.02 -0.32 5.90 -104.31 -0.62 -0.93 16 6 C -0.11 -2.06 8.76 36.01 0.32 -1.74 16 7 C -0.06 -1.16 5.59 -104.88 -0.59 -1.75 16 8 C 0.20 4.59 5.39 -82.94 -0.45 4.14 16 9 C -0.29 -6.09 9.54 -38.78 -0.37 -6.45 16 10 C -0.05 -1.04 10.15 -39.40 -0.40 -1.44 16 11 C -0.25 -5.85 9.83 -38.63 -0.38 -6.23 16 12 C 0.25 6.38 6.03 -85.01 -0.51 5.87 16 13 C -0.42 -11.34 9.64 -37.73 -0.36 -11.71 16 14 H 0.10 2.64 8.06 -52.48 -0.42 2.22 16 15 C 0.09 2.51 5.50 -17.35 -0.10 2.41 16 16 N -0.80 -21.30 13.92 55.55 0.77 -20.53 16 17 Si 0.97 23.99 25.45 -169.99 -4.33 19.67 16 18 H -0.26 -6.36 5.83 56.52 0.33 -6.03 16 19 H -0.32 -7.73 7.11 56.52 0.40 -7.33 16 20 H -0.27 -7.06 7.07 56.52 0.40 -6.66 16 21 N -0.55 -13.70 4.51 -7.69 -0.03 -13.74 16 22 C -0.06 -1.11 9.12 -39.26 -0.36 -1.47 16 23 C -0.13 -2.09 5.89 -104.52 -0.62 -2.70 16 24 C -0.10 -1.23 9.79 36.01 0.35 -0.88 16 25 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 26 H 0.05 0.48 7.64 -51.93 -0.40 0.08 16 27 H 0.05 0.51 7.67 -51.93 -0.40 0.11 16 28 H 0.13 1.71 6.28 -52.49 -0.33 1.38 16 29 H 0.09 1.79 6.87 -51.93 -0.36 1.43 16 30 H 0.05 0.79 8.05 -51.93 -0.42 0.38 16 31 H 0.07 1.49 7.05 -51.93 -0.37 1.12 16 32 H 0.10 1.89 8.02 -52.49 -0.42 1.47 16 33 H 0.10 1.78 8.06 -52.49 -0.42 1.36 16 34 H 0.11 2.29 8.06 -52.49 -0.42 1.87 16 35 H 0.29 7.02 8.29 -40.82 -0.34 6.68 16 36 H 0.13 2.09 8.02 -52.49 -0.42 1.67 16 37 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.06 0.72 8.08 -51.93 -0.42 0.30 16 39 H 0.07 0.81 7.51 -51.93 -0.39 0.42 16 LS Contribution 323.61 15.07 4.88 4.88 Total: -1.00 -29.14 323.61 -7.82 -36.96 By element: Atomic # 1 Polarization: 6.25 SS G_CDS: -5.24 Total: 1.01 kcal Atomic # 6 Polarization: -20.03 SS G_CDS: -3.69 Total: -23.72 kcal Atomic # 7 Polarization: -35.00 SS G_CDS: 0.74 Total: -34.26 kcal Atomic # 8 Polarization: -4.36 SS G_CDS: -0.18 Total: -4.54 kcal Atomic # 14 Polarization: 23.99 SS G_CDS: -4.33 Total: 19.67 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -29.14 -7.82 -36.96 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241134441.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.434 kcal (2) G-P(sol) polarization free energy of solvation -29.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds