Wall clock time and date at job start Tue Mar 31 2020 05:42:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35800 * 116.99827 * 2 1 4 4 C 1.39003 * 119.91241 * 359.97438 * 3 2 1 5 5 C 1.37732 * 120.08907 * 180.02562 * 4 3 2 6 6 C 1.50700 * 120.04137 * 179.97438 * 5 4 3 7 7 C 1.39740 * 119.90899 * 359.95031 * 5 4 3 8 8 C 1.47859 * 120.08732 * 180.02562 * 7 5 4 9 9 C 1.40337 * 120.34522 * 55.75533 * 8 7 5 10 10 C 1.36630 * 118.59836 * 179.77374 * 9 8 7 11 11 C 1.40903 * 119.26368 * 0.50120 * 10 9 8 12 12 C 1.40934 * 119.67460 * 179.71952 * 11 10 9 13 13 H 1.08002 * 120.00534 * 0.02562 * 12 11 10 14 14 C 1.40076 * 119.99867 * 180.02562 * 12 11 10 15 15 N 1.30733 * 120.00240 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 120.00143 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.47229 * 59.99722 * 16 14 12 18 18 H 1.48498 * 109.47387 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.46859 * 299.99956 * 16 14 12 20 20 N 1.33797 * 120.64851 * 359.73630 * 11 10 9 21 21 C 1.31175 * 121.50682 * 0.02562 * 20 11 10 22 22 C 1.39710 * 119.82681 * 0.04724 * 7 5 4 23 23 C 1.37773 * 119.90634 * 359.97438 * 22 7 5 24 24 C 1.50702 * 119.95288 * 180.02562 * 23 22 7 25 25 H 1.09000 * 109.47464 * 300.00152 * 1 2 3 26 26 H 1.09003 * 109.47076 * 60.00271 * 1 2 3 27 27 H 1.09008 * 109.47234 * 180.02562 * 1 2 3 28 28 H 1.07995 * 119.95324 * 0.02562 * 4 3 2 29 29 H 1.09004 * 109.47112 * 95.35386 * 6 5 4 30 30 H 1.08994 * 109.46882 * 215.34918 * 6 5 4 31 31 H 1.08996 * 109.47255 * 335.35818 * 6 5 4 32 32 H 1.08000 * 120.70301 * 0.02562 * 9 8 7 33 33 H 1.08003 * 120.36479 * 180.25997 * 10 9 8 34 34 H 0.96995 * 120.00704 * 179.97438 * 15 14 12 35 35 H 1.07996 * 119.65812 * 179.97438 * 21 20 11 36 36 H 1.07997 * 120.04379 * 180.24982 * 22 7 5 37 37 H 1.09004 * 109.46958 * 90.00024 * 24 23 22 38 38 H 1.09000 * 109.47027 * 209.99622 * 24 23 22 39 39 H 1.08999 * 109.47333 * 330.00205 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0455 1.2100 0.0000 4 6 1.2866 2.3746 -0.0005 5 6 1.9081 3.6037 -0.0011 6 6 1.0843 4.8657 -0.0022 7 6 3.3034 3.6790 0.0000 8 6 3.9747 4.9964 0.0000 9 6 3.6886 5.9380 1.0005 10 6 4.3329 7.1423 0.9688 11 6 5.2514 7.4050 -0.0670 12 6 5.9165 8.6467 -0.1114 13 1 5.7216 9.3913 0.6462 14 6 6.8305 8.9153 -1.1384 15 7 7.0662 8.0143 -2.0559 16 14 7.7127 10.5608 -1.1970 17 1 8.5056 10.7419 0.0455 18 1 8.6191 10.5950 -2.3727 19 1 6.7141 11.6540 -1.3106 20 7 5.4980 6.4873 -1.0089 21 6 4.8988 5.3204 -1.0027 22 6 4.0626 2.5062 0.0006 23 6 3.4333 1.2806 0.0006 24 6 4.2511 0.0148 0.0019 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 0.2083 2.3155 -0.0005 29 1 0.9655 5.2230 1.0207 30 1 1.5878 5.6276 -0.5971 31 1 0.1037 4.6590 -0.4310 32 1 2.9771 5.7137 1.7815 33 1 4.1375 7.8862 1.7270 34 1 7.6988 8.2003 -2.7672 35 1 5.1201 4.6020 -1.7780 36 1 5.1412 2.5602 0.0055 37 1 4.4475 -0.2899 1.0299 38 1 3.7011 -0.7736 -0.5120 39 1 5.1962 0.1923 -0.5113 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241135740.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:52 Heat of formation + Delta-G solvation = 4.045382 kcal Electronic energy + Delta-G solvation = -21195.267697 eV Core-core repulsion = 18067.366166 eV Total energy + Delta-G solvation = -3127.901531 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.00751 -38.39404 -37.04753 -33.93765 -33.36470 -31.20439 -30.57130 -28.88950 -28.64814 -27.45620 -25.57189 -24.20945 -22.28501 -21.74244 -20.97268 -19.73883 -17.55868 -17.21870 -16.09465 -15.65687 -15.59522 -15.27367 -14.32644 -14.19721 -13.91043 -13.72839 -13.34711 -12.94153 -12.89885 -12.56872 -12.43131 -12.27378 -12.01486 -11.89529 -11.64333 -11.59974 -11.27009 -11.22881 -11.08256 -10.76131 -10.52460 -10.51721 -10.34284 -9.96344 -9.41427 -8.40398 -8.25576 -7.93814 -7.60079 -7.16053 -6.47858 -4.57882 1.72011 1.76170 2.71241 3.03412 3.05252 3.06369 3.14682 3.45921 3.87132 4.13827 4.67146 4.99108 5.07982 5.13483 5.20689 5.39681 5.42946 5.53556 5.66278 5.83700 5.87069 5.91261 5.95340 6.01856 6.02465 6.06716 6.17441 6.19698 6.41709 6.62895 6.64379 6.76604 6.80008 6.86317 7.03776 7.14776 7.20158 7.35801 7.55007 7.66711 7.78268 7.98075 8.14313 8.56370 8.85069 10.05014 10.21753 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.034631 B = 0.003638 C = 0.003423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.335038 B = 7694.776128 C = 8177.222197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.320 6.320 3 C 0.099 3.901 4 C -0.201 4.201 5 C -0.060 4.060 6 C -0.107 4.107 7 C -0.010 4.010 8 C -0.269 4.269 9 C -0.034 4.034 10 C -0.274 4.274 11 C 0.255 3.745 12 C -0.420 4.420 13 H 0.084 0.916 14 C 0.066 3.934 15 N -0.706 5.706 16 Si 0.909 3.091 17 H -0.264 1.264 18 H -0.276 1.276 19 H -0.264 1.264 20 N -0.488 5.488 21 C 0.151 3.849 22 C -0.086 4.086 23 C -0.120 4.120 24 C -0.100 4.100 25 H 0.051 0.949 26 H 0.051 0.949 27 H 0.093 0.907 28 H 0.119 0.881 29 H 0.065 0.935 30 H 0.076 0.924 31 H 0.052 0.948 32 H 0.093 0.907 33 H 0.098 0.902 34 H 0.275 0.725 35 H 0.118 0.882 36 H 0.126 0.874 37 H 0.061 0.939 38 H 0.064 0.936 39 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.404 -9.867 2.235 13.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.234 6.234 3 C 0.055 3.945 4 C -0.220 4.220 5 C -0.061 4.061 6 C -0.163 4.163 7 C -0.012 4.012 8 C -0.274 4.274 9 C -0.057 4.057 10 C -0.297 4.297 11 C 0.131 3.869 12 C -0.450 4.450 13 H 0.103 0.897 14 C -0.160 4.160 15 N -0.327 5.327 16 Si 0.733 3.267 17 H -0.188 1.188 18 H -0.201 1.201 19 H -0.188 1.188 20 N -0.200 5.200 21 C -0.016 4.016 22 C -0.104 4.104 23 C -0.121 4.121 24 C -0.157 4.157 25 H 0.069 0.931 26 H 0.070 0.930 27 H 0.111 0.889 28 H 0.137 0.863 29 H 0.083 0.917 30 H 0.095 0.905 31 H 0.071 0.929 32 H 0.112 0.888 33 H 0.116 0.884 34 H 0.087 0.913 35 H 0.135 0.865 36 H 0.144 0.856 37 H 0.080 0.920 38 H 0.083 0.917 39 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -7.565 -9.825 1.389 12.478 hybrid contribution -0.588 0.622 0.675 1.090 sum -8.153 -9.203 2.064 12.467 Atomic orbital electron populations 1.22942 0.79336 1.03128 1.01103 1.85976 1.20532 1.27426 1.89461 1.18752 0.91630 0.83660 1.00506 1.20900 0.99038 0.91870 1.10151 1.19820 0.93560 0.94008 0.98668 1.20749 0.97930 0.95518 1.02123 1.18677 0.91293 0.92984 0.98199 1.18915 1.09726 0.94871 1.03900 1.20555 0.96465 0.92956 0.95736 1.21388 1.06204 0.98333 1.03779 1.18611 0.88916 0.92379 0.87004 1.19639 1.18141 0.98820 1.08449 0.89738 1.26140 0.96587 0.98401 0.94914 1.70119 1.23044 1.32163 1.07327 0.86359 0.79621 0.81909 0.78819 1.18823 1.20099 1.18837 1.68795 1.24972 1.00775 1.25416 1.22707 0.90366 0.94361 0.94207 1.21071 0.99654 0.90252 0.99452 1.19088 0.90332 0.95882 1.06778 1.20547 0.98736 0.94658 1.01713 0.93065 0.93026 0.88860 0.86310 0.91661 0.90521 0.92899 0.88846 0.88384 0.91326 0.86451 0.85635 0.91985 0.91731 0.91911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 9.81 101.05 0.99 1.28 16 2 O -0.32 -4.43 9.52 -19.11 -0.18 -4.61 16 3 C 0.10 1.55 6.67 -39.03 -0.26 1.29 16 4 C -0.20 -3.10 8.65 -39.48 -0.34 -3.44 16 5 C -0.06 -1.04 5.88 -104.25 -0.61 -1.65 16 6 C -0.11 -1.68 8.57 36.01 0.31 -1.37 16 7 C -0.01 -0.20 5.43 -104.85 -0.57 -0.77 16 8 C -0.27 -5.86 4.55 -104.45 -0.48 -6.34 16 9 C -0.03 -0.73 8.33 -39.37 -0.33 -1.06 16 10 C -0.27 -6.57 9.76 -39.15 -0.38 -6.95 16 11 C 0.25 6.81 6.55 -84.98 -0.56 6.25 16 12 C -0.42 -10.97 9.12 -37.87 -0.35 -11.32 16 13 H 0.08 2.05 7.85 -52.49 -0.41 1.63 16 14 C 0.07 1.64 5.50 -17.33 -0.10 1.55 16 15 N -0.71 -18.43 11.44 55.55 0.64 -17.79 16 16 Si 0.91 18.09 29.56 -169.99 -5.02 13.07 16 17 H -0.26 -5.18 7.11 56.52 0.40 -4.77 16 18 H -0.28 -5.36 7.11 56.52 0.40 -4.96 16 19 H -0.26 -5.17 7.11 56.52 0.40 -4.77 16 20 N -0.49 -13.23 7.83 -10.84 -0.08 -13.31 16 21 C 0.15 3.63 10.80 -17.11 -0.18 3.45 16 22 C -0.09 -1.52 9.27 -39.20 -0.36 -1.89 16 23 C -0.12 -1.94 5.89 -104.52 -0.62 -2.55 16 24 C -0.10 -1.32 9.78 36.01 0.35 -0.97 16 25 H 0.05 0.46 7.65 -51.93 -0.40 0.06 16 26 H 0.05 0.47 7.65 -51.93 -0.40 0.07 16 27 H 0.09 0.66 8.14 -51.92 -0.42 0.24 16 28 H 0.12 1.53 6.28 -52.49 -0.33 1.20 16 29 H 0.06 0.97 7.56 -51.93 -0.39 0.58 16 30 H 0.08 1.37 7.02 -51.93 -0.36 1.01 16 31 H 0.05 0.70 8.05 -51.93 -0.42 0.28 16 32 H 0.09 1.83 7.34 -52.49 -0.39 1.45 16 33 H 0.10 2.17 8.06 -52.48 -0.42 1.75 16 34 H 0.28 6.51 8.29 -40.82 -0.34 6.17 16 35 H 0.12 2.62 8.06 -52.49 -0.42 2.19 16 36 H 0.13 2.15 8.06 -52.49 -0.42 1.73 16 37 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.06 0.82 7.52 -51.93 -0.39 0.43 16 39 H 0.06 0.76 8.08 -51.93 -0.42 0.34 16 LS Contribution 327.98 15.07 4.94 4.94 Total: -1.00 -28.88 327.98 -8.35 -37.23 By element: Atomic # 1 Polarization: 10.11 SS G_CDS: -5.15 Total: 4.96 kcal Atomic # 6 Polarization: -21.00 SS G_CDS: -3.48 Total: -24.48 kcal Atomic # 7 Polarization: -31.65 SS G_CDS: 0.55 Total: -31.10 kcal Atomic # 8 Polarization: -4.43 SS G_CDS: -0.18 Total: -4.61 kcal Atomic # 14 Polarization: 18.09 SS G_CDS: -5.02 Total: 13.07 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -28.88 -8.35 -37.23 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241135740.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.276 kcal (2) G-P(sol) polarization free energy of solvation -28.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.230 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds