Wall clock time and date at job start Tue Mar 31 2020 05:42:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35875 * 117.00029 * 2 1 4 4 C 1.38850 * 119.93514 * 0.02562 * 3 2 1 5 5 C 1.37888 * 120.06457 * 180.02562 * 4 3 2 6 6 C 1.50703 * 120.03332 * 180.02562 * 5 4 3 7 7 C 1.39389 * 119.93506 * 359.97405 * 5 4 3 8 8 C 1.48382 * 120.06320 * 179.97438 * 7 5 4 9 9 C 1.39727 * 120.41392 * 310.00085 * 8 7 5 10 10 N 1.31902 * 121.14997 * 180.02562 * 9 8 7 11 11 C 1.31528 * 122.12097 * 0.02562 * 10 9 8 12 12 C 1.40775 * 120.66925 * 359.97438 * 11 10 9 13 13 C 1.41437 * 120.60311 * 179.97438 * 12 11 10 14 14 H 1.07998 * 120.00064 * 335.79648 * 13 12 11 15 15 C 1.39934 * 119.99886 * 155.79977 * 13 12 11 16 16 N 1.30825 * 119.99994 * 342.92982 * 15 13 12 17 17 Si 1.86796 * 119.99861 * 162.93198 * 15 13 12 18 18 H 1.48505 * 109.47167 * 359.97438 * 17 15 13 19 19 H 1.48491 * 109.47342 * 120.00015 * 17 15 13 20 20 H 1.48505 * 109.46871 * 240.00042 * 17 15 13 21 21 C 1.39148 * 120.41098 * 130.02816 * 8 7 5 22 22 C 1.39346 * 119.87189 * 0.25681 * 7 5 4 23 23 C 1.37933 * 119.93365 * 359.48978 * 22 7 5 24 24 C 1.50701 * 119.96954 * 180.23054 * 23 22 7 25 25 H 1.09008 * 109.47036 * 299.99878 * 1 2 3 26 26 H 1.09000 * 109.47483 * 59.99969 * 1 2 3 27 27 H 1.09007 * 109.47377 * 179.97438 * 1 2 3 28 28 H 1.07998 * 119.96629 * 359.97438 * 4 3 2 29 29 H 1.09000 * 109.46774 * 269.97787 * 6 5 4 30 30 H 1.08996 * 109.46845 * 29.97483 * 6 5 4 31 31 H 1.08990 * 109.47022 * 149.97574 * 6 5 4 32 32 H 1.08000 * 119.42331 * 359.74242 * 9 8 7 33 33 H 1.08001 * 119.66736 * 179.97438 * 11 10 9 34 34 H 0.97007 * 119.99965 * 180.02562 * 16 15 13 35 35 H 1.08000 * 120.95517 * 359.97438 * 21 8 7 36 36 H 1.07998 * 120.03676 * 179.71835 * 22 7 5 37 37 H 1.09005 * 109.47226 * 270.29967 * 24 23 22 38 38 H 1.09003 * 109.46831 * 30.29677 * 24 23 22 39 39 H 1.09000 * 109.47420 * 150.29895 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0458 1.2107 0.0000 4 6 1.2883 2.3743 0.0005 5 6 1.9115 3.6043 0.0000 6 6 1.0886 4.8668 0.0012 7 6 3.3034 3.6788 -0.0005 8 6 3.9770 5.0009 -0.0017 9 6 3.6077 5.9822 -0.9253 10 7 4.1971 7.1621 -0.9396 11 6 5.1548 7.4757 -0.0945 12 6 5.5920 6.5495 0.8713 13 6 6.6224 6.8880 1.7791 14 1 7.3369 7.6563 1.5230 15 6 6.7161 6.2274 3.0091 16 7 5.6936 5.5535 3.4693 17 14 8.3013 6.3080 3.9941 18 1 9.2992 7.1268 3.2599 19 1 8.0311 6.9251 5.3173 20 1 8.8341 4.9353 4.1875 21 6 4.9848 5.2788 0.9167 22 6 4.0610 2.5093 -0.0059 23 6 3.4321 1.2817 -0.0001 24 6 4.2507 0.0164 -0.0007 25 1 -0.3633 0.5139 0.8901 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 0.2099 2.3159 0.0005 29 1 0.8894 5.1715 -1.0262 30 1 0.1451 4.6850 0.5157 31 1 1.6362 5.6569 0.5148 32 1 2.8292 5.7692 -1.6429 33 1 5.6105 8.4538 -0.1418 34 1 5.7585 5.0959 4.3222 35 1 5.2930 4.5415 1.6432 36 1 5.1396 2.5640 -0.0110 37 1 4.4479 -0.2882 -1.0285 38 1 5.1954 0.1947 0.5131 39 1 3.7009 -0.7723 0.5129 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241136031.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:54 Heat of formation + Delta-G solvation = -5.998281 kcal Electronic energy + Delta-G solvation = -21534.583657 eV Core-core repulsion = 18406.246600 eV Total energy + Delta-G solvation = -3128.337057 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.09211 -38.52172 -37.10277 -34.15488 -33.56494 -31.66480 -30.33127 -28.92361 -28.34703 -27.25948 -25.58801 -24.46967 -22.62030 -21.60402 -21.04488 -19.77230 -17.31897 -17.21686 -16.14551 -15.69576 -15.64348 -15.19094 -14.86006 -14.37549 -13.93368 -13.77292 -13.36870 -13.13039 -12.89237 -12.60645 -12.46653 -12.10462 -11.98488 -11.74364 -11.69373 -11.54455 -11.46794 -11.33397 -11.18155 -10.90688 -10.67470 -10.55837 -10.46834 -9.80626 -9.41228 -8.51248 -8.23485 -8.16491 -7.75257 -7.17725 -6.87509 -4.51957 1.64256 1.68994 2.62363 2.89740 3.01460 3.06457 3.16427 3.42348 3.83475 4.10077 4.55546 4.96885 5.05696 5.13358 5.17587 5.33189 5.39456 5.50483 5.57179 5.65661 5.81716 5.87324 5.92200 5.97525 5.99606 6.09863 6.15418 6.34696 6.51767 6.61139 6.63118 6.72487 6.77368 6.88737 7.03800 7.10519 7.16353 7.25113 7.62753 7.67774 7.83247 7.90976 8.39191 8.64808 8.67977 9.60159 10.03581 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.017687 B = 0.005032 C = 0.004289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1582.700835 B = 5563.387944 C = 6526.940019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.319 6.319 3 C 0.111 3.889 4 C -0.204 4.204 5 C -0.044 4.044 6 C -0.113 4.113 7 C -0.040 4.040 8 C -0.086 4.086 9 C -0.022 4.022 10 N -0.471 5.471 11 C -0.020 4.020 12 C 0.063 3.937 13 C -0.451 4.451 14 H 0.084 0.916 15 C 0.075 3.925 16 N -0.789 5.789 17 Si 0.910 3.090 18 H -0.258 1.258 19 H -0.273 1.273 20 H -0.271 1.271 21 C -0.116 4.116 22 C -0.071 4.071 23 C -0.123 4.123 24 C -0.100 4.100 25 H 0.052 0.948 26 H 0.052 0.948 27 H 0.094 0.906 28 H 0.123 0.877 29 H 0.069 0.931 30 H 0.055 0.945 31 H 0.079 0.921 32 H 0.120 0.880 33 H 0.125 0.875 34 H 0.283 0.717 35 H 0.129 0.871 36 H 0.128 0.872 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.596 -9.674 -2.536 11.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.233 6.233 3 C 0.067 3.933 4 C -0.223 4.223 5 C -0.045 4.045 6 C -0.169 4.169 7 C -0.041 4.041 8 C -0.088 4.088 9 C -0.180 4.180 10 N -0.178 5.178 11 C -0.181 4.181 12 C 0.058 3.942 13 C -0.481 4.481 14 H 0.102 0.898 15 C -0.144 4.144 16 N -0.413 5.413 17 Si 0.734 3.266 18 H -0.182 1.182 19 H -0.198 1.198 20 H -0.196 1.196 21 C -0.142 4.142 22 C -0.089 4.089 23 C -0.124 4.124 24 C -0.156 4.156 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.112 0.888 28 H 0.140 0.860 29 H 0.088 0.912 30 H 0.074 0.926 31 H 0.098 0.902 32 H 0.137 0.863 33 H 0.143 0.857 34 H 0.094 0.906 35 H 0.147 0.853 36 H 0.146 0.854 37 H 0.081 0.919 38 H 0.082 0.918 39 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -6.865 -9.385 -2.938 11.993 hybrid contribution 0.591 -0.501 1.289 1.504 sum -6.274 -9.886 -1.649 11.824 Atomic orbital electron populations 1.22968 0.79175 1.03250 1.01213 1.86004 1.20683 1.27291 1.89280 1.18728 0.91639 0.83746 0.99214 1.20899 0.99263 0.91718 1.10430 1.19706 0.93143 0.94350 0.97256 1.20870 0.98423 0.95456 1.02151 1.18745 0.91893 0.93042 1.00461 1.19361 0.98360 0.92633 0.98472 1.21768 1.03933 0.90586 1.01672 1.66941 1.08093 1.19326 1.23412 1.22515 0.98509 0.98866 0.98222 1.18464 0.92144 0.91162 0.92381 1.19583 1.10944 1.18215 0.99339 0.89826 1.25959 0.97328 0.93165 0.97934 1.69800 1.29175 1.24043 1.18314 0.86224 0.81846 0.79201 0.79337 1.18198 1.19846 1.19584 1.21780 0.96785 0.97198 0.98438 1.20977 0.99796 0.90151 0.97958 1.19084 0.90413 0.95874 1.07028 1.20548 0.98794 0.94526 1.01774 0.92916 0.92941 0.88762 0.85951 0.91210 0.92559 0.90205 0.86287 0.85705 0.90594 0.85328 0.85408 0.91876 0.91834 0.91622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 9.81 101.05 0.99 1.28 16 2 O -0.32 -4.47 9.53 -19.35 -0.18 -4.65 16 3 C 0.11 1.78 6.66 -39.14 -0.26 1.52 16 4 C -0.20 -3.22 8.68 -39.48 -0.34 -3.56 16 5 C -0.04 -0.79 5.87 -104.32 -0.61 -1.40 16 6 C -0.11 -1.83 8.45 36.01 0.30 -1.53 16 7 C -0.04 -0.81 5.49 -104.88 -0.58 -1.39 16 8 C -0.09 -1.97 4.71 -104.83 -0.49 -2.46 16 9 C -0.02 -0.50 9.08 -16.97 -0.15 -0.65 16 10 N -0.47 -11.53 10.32 -12.28 -0.13 -11.65 16 11 C -0.02 -0.50 10.96 -16.72 -0.18 -0.69 16 12 C 0.06 1.63 5.59 -106.71 -0.60 1.03 16 13 C -0.45 -11.46 9.08 -37.73 -0.34 -11.81 16 14 H 0.08 2.03 7.90 -52.49 -0.41 1.61 16 15 C 0.07 1.80 5.18 -17.35 -0.09 1.71 16 16 N -0.79 -19.71 10.93 55.55 0.61 -19.11 16 17 Si 0.91 17.95 29.59 -169.99 -5.03 12.92 16 18 H -0.26 -5.04 7.11 56.52 0.40 -4.64 16 19 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 20 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 21 C -0.12 -2.93 8.29 -38.23 -0.32 -3.25 16 22 C -0.07 -1.31 9.18 -39.28 -0.36 -1.68 16 23 C -0.12 -2.06 5.89 -104.52 -0.62 -2.67 16 24 C -0.10 -1.37 9.78 36.01 0.35 -1.01 16 25 H 0.05 0.49 7.65 -51.92 -0.40 0.09 16 26 H 0.05 0.47 7.66 -51.93 -0.40 0.07 16 27 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.12 1.58 6.28 -52.49 -0.33 1.25 16 29 H 0.07 1.04 7.51 -51.93 -0.39 0.65 16 30 H 0.06 0.78 8.08 -51.93 -0.42 0.36 16 31 H 0.08 1.51 6.45 -51.93 -0.34 1.18 16 32 H 0.12 2.47 6.86 -52.49 -0.36 2.11 16 33 H 0.13 2.89 8.06 -52.49 -0.42 2.47 16 34 H 0.28 6.45 8.30 -40.82 -0.34 6.11 16 35 H 0.13 3.34 6.22 -52.49 -0.33 3.01 16 36 H 0.13 2.33 8.05 -52.49 -0.42 1.91 16 37 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.06 0.82 8.09 -51.93 -0.42 0.40 16 39 H 0.06 0.86 7.52 -51.93 -0.39 0.47 16 LS Contribution 325.31 15.07 4.90 4.90 Total: -1.00 -28.14 325.31 -8.13 -36.27 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: -5.01 Total: 7.86 kcal Atomic # 6 Polarization: -23.25 SS G_CDS: -3.30 Total: -26.55 kcal Atomic # 7 Polarization: -31.24 SS G_CDS: 0.48 Total: -30.76 kcal Atomic # 8 Polarization: -4.47 SS G_CDS: -0.18 Total: -4.65 kcal Atomic # 14 Polarization: 17.95 SS G_CDS: -5.03 Total: 12.92 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -28.14 -8.13 -36.27 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241136031.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.276 kcal (2) G-P(sol) polarization free energy of solvation -28.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds