Wall clock time and date at job start Tue Mar 31 2020 05:43:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35799 * 116.99954 * 2 1 4 4 C 1.39008 * 119.90371 * 0.22843 * 3 2 1 5 5 C 1.37723 * 120.09170 * 180.27421 * 4 3 2 6 6 C 1.50700 * 120.04655 * 179.77039 * 5 4 3 7 7 C 1.39794 * 119.90182 * 359.74789 * 5 4 3 8 8 C 1.47738 * 120.08945 * 179.97438 * 7 5 4 9 9 C 1.39390 * 120.79113 * 244.74425 * 8 7 5 10 10 N 1.31642 * 120.64395 * 179.70538 * 9 8 7 11 11 C 1.32244 * 122.51733 * 0.59660 * 10 9 8 12 12 C 1.36431 * 121.52409 * 359.69733 * 11 10 9 13 13 C 1.41138 * 119.11761 * 359.97438 * 12 11 10 14 14 C 1.40874 * 121.11774 * 180.02562 * 13 12 11 15 15 H 1.07994 * 120.00676 * 151.83913 * 14 13 12 16 16 C 1.40163 * 119.99593 * 331.84270 * 14 13 12 17 17 N 1.30692 * 119.99843 * 160.82076 * 16 14 13 18 18 Si 1.86800 * 119.99922 * 340.81695 * 16 14 13 19 19 H 1.48504 * 109.47008 * 95.45617 * 18 16 14 20 20 H 1.48494 * 109.47385 * 215.45806 * 18 16 14 21 21 H 1.48508 * 109.47168 * 335.45769 * 18 16 14 22 22 C 1.39750 * 119.81695 * 0.02562 * 7 5 4 23 23 C 1.37765 * 119.90308 * 359.97438 * 22 7 5 24 24 C 1.50700 * 119.95008 * 179.97438 * 23 22 7 25 25 H 1.08991 * 109.47491 * 300.00330 * 1 2 3 26 26 H 1.09007 * 109.46734 * 60.00366 * 1 2 3 27 27 H 1.09004 * 109.47005 * 179.97438 * 1 2 3 28 28 H 1.07997 * 119.95580 * 0.02662 * 4 3 2 29 29 H 1.09000 * 109.46837 * 269.97666 * 6 5 4 30 30 H 1.08998 * 109.47574 * 29.98228 * 6 5 4 31 31 H 1.09007 * 109.47163 * 149.98284 * 6 5 4 32 32 H 1.07993 * 119.67596 * 359.97438 * 9 8 7 33 33 H 1.07999 * 119.23387 * 179.71870 * 11 10 9 34 34 H 1.08004 * 120.44210 * 180.02562 * 12 11 10 35 35 H 0.97000 * 119.99812 * 179.97438 * 17 16 14 36 36 H 1.08005 * 120.04877 * 180.02562 * 22 7 5 37 37 H 1.09006 * 109.47283 * 90.00014 * 24 23 22 38 38 H 1.08993 * 109.47577 * 329.99826 * 24 23 22 39 39 H 1.08999 * 109.46837 * 209.99883 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0455 1.2100 0.0000 4 6 1.2865 2.3745 0.0048 5 6 1.9077 3.6037 -0.0009 6 6 1.0837 4.8655 -0.0009 7 6 3.3036 3.6791 -0.0062 8 6 3.9742 4.9954 -0.0128 9 6 4.7494 5.3958 -1.0999 10 7 5.3410 6.5718 -1.1053 11 6 5.2460 7.4200 -0.0952 12 6 4.5166 7.1235 1.0190 13 6 3.8487 5.8824 1.0925 14 6 3.0836 5.5331 2.2226 15 1 2.2477 4.8569 2.1210 16 6 3.4072 6.0634 3.4791 17 7 2.5195 6.0597 4.4382 18 14 5.1073 6.7754 3.7826 19 1 5.0724 8.2455 3.5758 20 1 5.5254 6.4814 5.1768 21 1 6.0757 6.1652 2.8364 22 6 4.0628 2.5058 -0.0062 23 6 3.4333 1.2804 -0.0005 24 6 4.2510 0.0145 -0.0011 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 0.2081 2.3153 0.0090 29 1 0.8814 5.1672 -1.0286 30 1 0.1418 4.6845 0.5169 31 1 1.6322 5.6576 0.5090 32 1 4.8623 4.7366 -1.9478 33 1 5.7573 8.3695 -0.1538 34 1 4.4506 7.8295 1.8337 35 1 2.7435 6.4263 5.3078 36 1 5.1415 2.5597 -0.0098 37 1 4.4528 -0.2883 1.0265 38 1 5.1934 0.1909 -0.5195 39 1 3.6983 -0.7748 -0.5106 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241137675.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:07 Heat of formation + Delta-G solvation = 0.737736 kcal Electronic energy + Delta-G solvation = -22060.992150 eV Core-core repulsion = 18932.947189 eV Total energy + Delta-G solvation = -3128.044961 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.93316 -38.71401 -36.98501 -34.27650 -33.35071 -31.62681 -30.95354 -28.71700 -28.34836 -27.22414 -25.95211 -24.16096 -22.69874 -21.52972 -21.07129 -19.60367 -17.83800 -17.05733 -16.09161 -15.87547 -15.52517 -15.15567 -14.69025 -14.28530 -13.92820 -13.60836 -13.39058 -13.17395 -13.05627 -12.61595 -12.57892 -12.34651 -12.12402 -11.83525 -11.64837 -11.50337 -11.42236 -11.11781 -10.98261 -10.67094 -10.58902 -10.40576 -10.27067 -9.75239 -9.42707 -8.29714 -8.27549 -8.10745 -7.91440 -7.17690 -7.13886 -4.77095 1.87420 1.90392 2.47377 2.58360 3.01076 3.11126 3.21859 3.58723 3.83086 4.26416 4.46956 5.13119 5.22277 5.25686 5.27684 5.41498 5.49219 5.53398 5.62379 5.72117 5.83015 5.96968 5.99449 6.04838 6.12139 6.23841 6.29674 6.32273 6.43267 6.50813 6.62554 6.84213 6.85252 6.89103 7.00423 7.13465 7.15380 7.29479 7.41876 7.59108 7.83710 7.89812 8.16433 8.40283 8.57013 9.36385 9.82216 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.016964 B = 0.006206 C = 0.005540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1650.173256 B = 4510.595232 C = 5052.836953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.321 6.321 3 C 0.106 3.894 4 C -0.204 4.204 5 C -0.035 4.035 6 C -0.126 4.126 7 C -0.012 4.012 8 C -0.210 4.210 9 C 0.133 3.867 10 N -0.580 5.580 11 C 0.114 3.886 12 C -0.286 4.286 13 C 0.121 3.879 14 C -0.427 4.427 15 H 0.107 0.893 16 C 0.088 3.912 17 N -0.786 5.786 18 Si 0.912 3.088 19 H -0.267 1.267 20 H -0.288 1.288 21 H -0.245 1.245 22 C -0.079 4.079 23 C -0.126 4.126 24 C -0.098 4.098 25 H 0.053 0.947 26 H 0.051 0.949 27 H 0.092 0.908 28 H 0.119 0.881 29 H 0.057 0.943 30 H 0.054 0.946 31 H 0.101 0.899 32 H 0.126 0.874 33 H 0.122 0.878 34 H 0.107 0.893 35 H 0.289 0.711 36 H 0.123 0.877 37 H 0.061 0.939 38 H 0.060 0.940 39 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.243 -7.145 -4.297 8.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.235 6.235 3 C 0.062 3.938 4 C -0.223 4.223 5 C -0.035 4.035 6 C -0.182 4.182 7 C -0.013 4.013 8 C -0.215 4.215 9 C -0.022 4.022 10 N -0.295 5.295 11 C -0.037 4.037 12 C -0.308 4.308 13 C 0.113 3.887 14 C -0.456 4.456 15 H 0.125 0.875 16 C -0.135 4.135 17 N -0.408 5.408 18 Si 0.738 3.262 19 H -0.193 1.193 20 H -0.216 1.216 21 H -0.168 1.168 22 C -0.097 4.097 23 C -0.127 4.127 24 C -0.154 4.154 25 H 0.071 0.929 26 H 0.069 0.931 27 H 0.111 0.889 28 H 0.137 0.863 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.119 0.881 32 H 0.143 0.857 33 H 0.139 0.861 34 H 0.125 0.875 35 H 0.100 0.900 36 H 0.141 0.859 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -1.787 -7.046 -4.764 8.691 hybrid contribution -0.274 0.295 1.246 1.310 sum -2.061 -6.751 -3.518 7.886 Atomic orbital electron populations 1.22945 0.79322 1.03043 1.01232 1.85962 1.20572 1.27506 1.89418 1.18755 0.91604 0.83620 0.99806 1.20913 0.99136 0.91884 1.10361 1.19796 0.93382 0.94099 0.96241 1.21079 0.99068 0.96672 1.01383 1.18375 0.91488 0.92258 0.99136 1.19394 1.08172 0.94709 0.99221 1.22195 0.92178 0.92495 0.95300 1.67395 1.27368 1.05099 1.29588 1.21630 0.95128 0.97071 0.89821 1.21594 1.09435 0.98905 1.00892 1.17788 0.88957 0.89517 0.92473 1.19687 1.12456 1.23148 0.90341 0.87515 1.26290 0.99236 0.92161 0.95843 1.69626 1.34730 1.32160 1.04298 0.86302 0.82672 0.79788 0.77468 1.19293 1.21558 1.16786 1.20962 0.99319 0.90262 0.99202 1.19002 0.90324 0.95741 1.07631 1.20520 0.98524 0.94688 1.01710 0.92874 0.93074 0.88929 0.86267 0.92395 0.92665 0.88077 0.85687 0.86053 0.87513 0.89982 0.85897 0.91998 0.92143 0.91821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 9.81 101.05 0.99 1.33 16 2 O -0.32 -4.93 9.52 -19.11 -0.18 -5.11 16 3 C 0.11 1.85 6.67 -39.03 -0.26 1.59 16 4 C -0.20 -3.61 8.67 -39.48 -0.34 -3.95 16 5 C -0.03 -0.69 4.98 -104.23 -0.52 -1.21 16 6 C -0.13 -2.39 8.76 36.01 0.32 -2.07 16 7 C -0.01 -0.24 4.76 -104.87 -0.50 -0.74 16 8 C -0.21 -4.70 4.67 -104.04 -0.49 -5.18 16 9 C 0.13 2.88 10.92 -17.20 -0.19 2.70 16 10 N -0.58 -13.07 10.32 -13.36 -0.14 -13.20 16 11 C 0.11 2.50 11.08 -18.03 -0.20 2.30 16 12 C -0.29 -6.62 7.25 -39.13 -0.28 -6.91 16 13 C 0.12 2.90 4.12 -106.25 -0.44 2.46 16 14 C -0.43 -10.72 7.76 -37.86 -0.29 -11.02 16 15 H 0.11 2.80 5.47 -52.49 -0.29 2.51 16 16 C 0.09 2.15 5.42 -17.31 -0.09 2.06 16 17 N -0.79 -19.57 13.92 55.56 0.77 -18.80 16 18 Si 0.91 19.88 24.53 -169.99 -4.17 15.71 16 19 H -0.27 -5.60 6.69 56.52 0.38 -5.22 16 20 H -0.29 -6.09 7.11 56.52 0.40 -5.69 16 21 H -0.24 -5.59 6.87 56.52 0.39 -5.20 16 22 C -0.08 -1.50 9.39 -39.19 -0.37 -1.87 16 23 C -0.13 -2.21 5.89 -104.53 -0.62 -2.82 16 24 C -0.10 -1.39 9.79 36.01 0.35 -1.04 16 25 H 0.05 0.59 7.64 -51.93 -0.40 0.19 16 26 H 0.05 0.53 7.66 -51.92 -0.40 0.13 16 27 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 28 H 0.12 1.82 6.28 -52.49 -0.33 1.49 16 29 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 31 H 0.10 2.20 4.29 -51.93 -0.22 1.98 16 32 H 0.13 2.41 8.06 -52.49 -0.42 1.99 16 33 H 0.12 2.30 8.06 -52.49 -0.42 1.88 16 34 H 0.11 2.42 4.69 -52.48 -0.25 2.17 16 35 H 0.29 6.52 8.29 -40.82 -0.34 6.19 16 36 H 0.12 2.18 8.06 -52.48 -0.42 1.75 16 37 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 38 H 0.06 0.76 8.08 -51.93 -0.42 0.34 16 39 H 0.06 0.86 7.51 -51.93 -0.39 0.47 16 LS Contribution 315.48 15.07 4.75 4.75 Total: -1.00 -27.42 315.48 -6.71 -34.13 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: -4.82 Total: 6.89 kcal Atomic # 6 Polarization: -21.44 SS G_CDS: -2.93 Total: -24.36 kcal Atomic # 7 Polarization: -32.64 SS G_CDS: 0.64 Total: -32.01 kcal Atomic # 8 Polarization: -4.93 SS G_CDS: -0.18 Total: -5.11 kcal Atomic # 14 Polarization: 19.88 SS G_CDS: -4.17 Total: 15.71 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -27.42 -6.71 -34.13 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241137675.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.869 kcal (2) G-P(sol) polarization free energy of solvation -27.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.131 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds