Wall clock time and date at job start Tue Mar 31 2020 05:42:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35797 * 116.99843 * 2 1 4 4 C 1.39021 * 119.90024 * 359.97438 * 3 2 1 5 5 C 1.37711 * 120.09041 * 179.71886 * 4 3 2 6 6 C 1.50703 * 120.04831 * 180.27680 * 5 4 3 7 7 C 1.39819 * 119.90465 * 0.55478 * 5 4 3 8 8 C 1.47698 * 120.09533 * 179.74230 * 7 5 4 9 9 C 1.39752 * 120.65420 * 244.74609 * 8 7 5 10 10 C 1.38341 * 118.46752 * 179.97438 * 9 8 7 11 11 C 1.39078 * 119.73890 * 0.02562 * 10 9 8 12 12 N 1.31265 * 121.35997 * 359.97438 * 11 10 9 13 13 C 1.33719 * 121.63477 * 0.02562 * 12 11 10 14 14 C 1.40753 * 119.94466 * 180.02562 * 13 12 11 15 15 H 1.08009 * 119.99633 * 176.43121 * 14 13 12 16 16 C 1.40126 * 120.00114 * 356.43171 * 14 13 12 17 17 N 1.30706 * 119.99603 * 7.11963 * 16 14 13 18 18 Si 1.86799 * 119.99804 * 187.12064 * 16 14 13 19 19 H 1.48498 * 109.47056 * 94.97823 * 18 16 14 20 20 H 1.48499 * 109.46835 * 214.97612 * 18 16 14 21 21 H 1.48498 * 109.47248 * 334.97397 * 18 16 14 22 22 C 1.39779 * 119.80852 * 359.47062 * 7 5 4 23 23 C 1.37751 * 119.90396 * 0.24920 * 22 7 5 24 24 C 1.50698 * 119.94977 * 180.02562 * 23 22 7 25 25 H 1.09006 * 109.47021 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47508 * 300.00116 * 1 2 3 27 27 H 1.09008 * 109.47269 * 60.00427 * 1 2 3 28 28 H 1.07997 * 119.95677 * 0.02562 * 4 3 2 29 29 H 1.09004 * 109.47198 * 270.28163 * 6 5 4 30 30 H 1.09003 * 109.47327 * 30.27696 * 6 5 4 31 31 H 1.08997 * 109.47123 * 150.27970 * 6 5 4 32 32 H 1.07997 * 120.76949 * 359.95611 * 9 8 7 33 33 H 1.07998 * 120.12552 * 180.02562 * 10 9 8 34 34 H 1.08008 * 119.32170 * 180.26039 * 11 10 9 35 35 H 0.97006 * 119.99375 * 179.97438 * 17 16 14 36 36 H 1.07998 * 120.04523 * 180.23355 * 22 7 5 37 37 H 1.09006 * 109.47198 * 90.00443 * 24 23 22 38 38 H 1.09005 * 109.46967 * 209.99688 * 24 23 22 39 39 H 1.08993 * 109.47424 * 330.00095 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2100 0.0000 4 6 1.2862 2.3746 -0.0005 5 6 1.9073 3.6037 0.0053 6 6 1.0833 4.8655 0.0110 7 6 3.3034 3.6792 0.0001 8 6 3.9739 4.9953 0.0005 9 6 4.7501 5.3999 -1.0889 10 6 5.3573 6.6420 -1.0408 11 6 5.1850 7.4514 0.0770 12 7 4.4540 7.0627 1.0956 13 6 3.8426 5.8735 1.1070 14 6 3.0667 5.4930 2.2180 15 1 2.5258 4.5582 2.2042 16 6 2.9959 6.3270 3.3418 17 7 3.5338 7.5177 3.3069 18 14 2.1326 5.7369 4.8897 19 1 3.1315 5.1568 5.8229 20 1 1.4512 6.8828 5.5438 21 1 1.1290 4.7023 4.5330 22 6 4.0628 2.5057 0.0001 23 6 3.4334 1.2804 0.0001 24 6 4.2511 0.0146 0.0007 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8901 28 1 0.2079 2.3153 -0.0005 29 1 0.8806 5.1717 -1.0153 30 1 0.1414 4.6821 0.5281 31 1 1.6318 5.6552 0.5243 32 1 4.8734 4.7576 -1.9483 33 1 5.9628 6.9817 -1.8681 34 1 5.6587 8.4216 0.1056 35 1 3.4845 8.0951 4.0848 36 1 5.1414 2.5596 -0.0001 37 1 4.4478 -0.2905 1.0286 38 1 3.7008 -0.7737 -0.5131 39 1 5.1960 0.1921 -0.5127 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241139090.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:57 Heat of formation + Delta-G solvation = 8.598849 kcal Electronic energy + Delta-G solvation = -22047.633081 eV Core-core repulsion = 18919.929003 eV Total energy + Delta-G solvation = -3127.704078 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.87945 -38.39452 -36.83386 -33.82024 -33.31193 -31.43754 -30.26843 -28.70923 -28.30471 -27.19053 -25.69980 -24.13037 -22.47617 -21.35990 -20.95616 -19.53001 -17.51192 -17.03410 -16.00078 -15.64296 -15.49218 -15.08036 -14.38006 -14.21522 -13.79396 -13.56844 -13.20216 -12.90936 -12.67271 -12.49225 -12.34740 -12.18587 -11.79545 -11.73668 -11.50606 -11.37359 -11.27281 -11.11470 -11.08742 -10.54565 -10.41750 -10.35871 -10.28112 -9.81442 -9.38901 -8.28520 -8.10844 -7.79194 -7.58021 -7.07421 -6.47998 -4.55992 1.92804 1.95787 2.70293 2.97086 3.05330 3.09333 3.19205 3.59610 3.89710 4.31277 4.68396 5.14108 5.24157 5.26511 5.37558 5.52443 5.57685 5.76323 5.79928 5.88287 5.97236 6.01430 6.09276 6.12656 6.24897 6.28278 6.35113 6.39363 6.52594 6.65995 6.80722 6.90401 6.92423 7.08228 7.12668 7.29751 7.35766 7.41416 7.59521 7.72761 7.86986 8.01459 8.21659 8.58336 8.87879 10.04157 10.22187 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.014287 B = 0.006840 C = 0.005373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1959.289275 B = 4092.724878 C = 5210.364810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.321 6.321 3 C 0.102 3.898 4 C -0.206 4.206 5 C -0.036 4.036 6 C -0.125 4.125 7 C -0.006 4.006 8 C -0.226 4.226 9 C -0.037 4.037 10 C -0.320 4.320 11 C 0.129 3.871 12 N -0.484 5.484 13 C 0.269 3.731 14 C -0.417 4.417 15 H 0.090 0.910 16 C 0.070 3.930 17 N -0.708 5.708 18 Si 0.900 3.100 19 H -0.268 1.268 20 H -0.275 1.275 21 H -0.259 1.259 22 C -0.083 4.083 23 C -0.127 4.127 24 C -0.097 4.097 25 H 0.092 0.908 26 H 0.052 0.948 27 H 0.050 0.950 28 H 0.119 0.881 29 H 0.056 0.944 30 H 0.051 0.949 31 H 0.105 0.895 32 H 0.095 0.905 33 H 0.093 0.907 34 H 0.117 0.883 35 H 0.274 0.726 36 H 0.122 0.878 37 H 0.061 0.939 38 H 0.062 0.938 39 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.221 -8.944 -3.751 10.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.235 6.235 3 C 0.058 3.942 4 C -0.225 4.225 5 C -0.037 4.037 6 C -0.181 4.181 7 C -0.007 4.007 8 C -0.231 4.231 9 C -0.061 4.061 10 C -0.343 4.343 11 C -0.039 4.039 12 N -0.196 5.196 13 C 0.146 3.854 14 C -0.447 4.447 15 H 0.108 0.892 16 C -0.157 4.157 17 N -0.329 5.329 18 Si 0.724 3.276 19 H -0.193 1.193 20 H -0.200 1.200 21 H -0.183 1.183 22 C -0.102 4.102 23 C -0.128 4.128 24 C -0.154 4.154 25 H 0.110 0.890 26 H 0.070 0.930 27 H 0.069 0.931 28 H 0.137 0.863 29 H 0.074 0.926 30 H 0.070 0.930 31 H 0.124 0.876 32 H 0.113 0.887 33 H 0.112 0.888 34 H 0.135 0.865 35 H 0.085 0.915 36 H 0.140 0.860 37 H 0.080 0.920 38 H 0.081 0.919 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -4.249 -8.404 -2.856 9.841 hybrid contribution -0.477 -0.592 -0.085 0.765 sum -4.725 -8.996 -2.941 10.579 Atomic orbital electron populations 1.22932 0.79418 1.02976 1.01180 1.85957 1.20488 1.27559 1.89507 1.18750 0.91588 0.83588 1.00282 1.20926 0.99068 0.91932 1.10585 1.19843 0.93482 0.94056 0.96292 1.21072 0.98842 0.96879 1.01352 1.18501 0.91479 0.92547 0.98202 1.19259 1.09135 0.95934 0.98768 1.20864 0.94443 0.95064 0.95765 1.21193 1.12593 0.98623 1.01923 1.22570 0.94112 0.97427 0.89795 1.68762 1.10322 1.15887 1.24593 1.18491 0.89845 0.86646 0.90461 1.19655 1.23344 1.04504 0.97223 0.89184 1.26113 0.94879 0.94357 1.00336 1.70121 1.28342 1.05612 1.28789 0.86406 0.80269 0.79581 0.81340 1.19312 1.19991 1.18281 1.21009 0.99331 0.90340 0.99485 1.19007 0.90313 0.95728 1.07727 1.20514 0.98507 0.94719 1.01653 0.88980 0.92958 0.93101 0.86343 0.92577 0.92969 0.87632 0.88722 0.88835 0.86520 0.91474 0.86036 0.92039 0.91878 0.92209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 9.81 101.05 0.99 1.33 16 2 O -0.32 -4.94 9.52 -19.11 -0.18 -5.12 16 3 C 0.10 1.79 6.67 -39.02 -0.26 1.53 16 4 C -0.21 -3.66 8.67 -39.48 -0.34 -4.00 16 5 C -0.04 -0.73 4.83 -104.22 -0.50 -1.23 16 6 C -0.13 -2.43 9.10 36.01 0.33 -2.10 16 7 C -0.01 -0.14 4.51 -104.87 -0.47 -0.61 16 8 C -0.23 -5.33 4.67 -104.08 -0.49 -5.81 16 9 C -0.04 -0.82 9.88 -38.98 -0.39 -1.21 16 10 C -0.32 -7.04 10.10 -39.23 -0.40 -7.44 16 11 C 0.13 3.05 11.17 -17.48 -0.20 2.85 16 12 N -0.48 -12.94 7.87 -10.90 -0.09 -13.03 16 13 C 0.27 7.02 5.53 -84.70 -0.47 6.55 16 14 C -0.42 -10.69 6.83 -37.92 -0.26 -10.94 16 15 H 0.09 2.26 5.75 -52.48 -0.30 1.96 16 16 C 0.07 1.72 5.49 -17.32 -0.10 1.63 16 17 N -0.71 -18.27 11.49 55.56 0.64 -17.63 16 18 Si 0.90 18.45 29.57 -169.99 -5.03 13.43 16 19 H -0.27 -5.50 7.11 56.52 0.40 -5.09 16 20 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 21 H -0.26 -5.26 7.11 56.52 0.40 -4.86 16 22 C -0.08 -1.62 9.39 -39.18 -0.37 -1.99 16 23 C -0.13 -2.25 5.89 -104.53 -0.62 -2.87 16 24 C -0.10 -1.40 9.78 36.00 0.35 -1.05 16 25 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 26 H 0.05 0.57 7.65 -51.93 -0.40 0.17 16 27 H 0.05 0.53 7.65 -51.92 -0.40 0.13 16 28 H 0.12 1.80 6.28 -52.49 -0.33 1.47 16 29 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.05 0.90 8.09 -51.93 -0.42 0.48 16 31 H 0.11 2.39 4.31 -51.93 -0.22 2.17 16 32 H 0.09 1.88 8.06 -52.49 -0.42 1.46 16 33 H 0.09 1.80 8.06 -52.49 -0.42 1.38 16 34 H 0.12 2.46 8.06 -52.48 -0.42 2.04 16 35 H 0.27 6.42 8.29 -40.82 -0.34 6.08 16 36 H 0.12 2.24 8.06 -52.49 -0.42 1.82 16 37 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.06 0.86 7.52 -51.93 -0.39 0.47 16 39 H 0.06 0.77 8.08 -51.93 -0.42 0.35 16 LS Contribution 322.39 15.07 4.86 4.86 Total: -1.00 -28.59 322.39 -7.95 -36.54 By element: Atomic # 1 Polarization: 11.28 SS G_CDS: -4.97 Total: 6.31 kcal Atomic # 6 Polarization: -22.18 SS G_CDS: -3.18 Total: -25.36 kcal Atomic # 7 Polarization: -31.21 SS G_CDS: 0.55 Total: -30.66 kcal Atomic # 8 Polarization: -4.94 SS G_CDS: -0.18 Total: -5.12 kcal Atomic # 14 Polarization: 18.45 SS G_CDS: -5.03 Total: 13.43 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -28.59 -7.95 -36.54 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241139090.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.138 kcal (2) G-P(sol) polarization free energy of solvation -28.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.539 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds