Wall clock time and date at job start Tue Mar 31 2020 05:33:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35531 * 116.99696 * 2 1 4 4 C 1.39112 * 120.48551 * 0.02562 * 3 2 1 5 5 C 1.38334 * 118.63492 * 180.22676 * 4 3 2 6 6 C 1.40071 * 119.57134 * 359.50842 * 5 4 3 7 7 C 1.48257 * 119.51808 * 180.23440 * 6 5 4 8 8 C 1.39446 * 120.12229 * 311.64877 * 7 6 5 9 9 C 1.37975 * 119.86875 * 179.76837 * 8 7 6 10 10 C 1.50698 * 119.93841 * 180.25040 * 9 8 7 11 11 C 1.38366 * 120.12437 * 0.48353 * 9 8 7 12 12 C 1.38320 * 120.26212 * 359.76959 * 11 9 8 13 13 C 1.38018 * 120.12837 * 359.97438 * 12 11 9 14 14 C 1.50697 * 120.06390 * 180.02562 * 13 12 11 15 15 N 1.32175 * 120.96514 * 0.49889 * 6 5 4 16 16 C 1.33577 * 121.46309 * 359.75770 * 15 6 5 17 17 C 1.41006 * 119.83246 * 179.97438 * 16 15 6 18 18 H 1.07998 * 119.99692 * 172.80290 * 17 16 15 19 19 C 1.40028 * 119.99897 * 352.80719 * 17 16 15 20 20 N 1.30770 * 120.00151 * 4.55213 * 19 17 16 21 21 Si 1.86800 * 119.99661 * 184.55324 * 19 17 16 22 22 H 1.48496 * 109.47017 * 59.99832 * 21 19 17 23 23 H 1.48496 * 109.47126 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.47221 * 299.99679 * 21 19 17 25 25 H 1.08997 * 109.47356 * 299.99581 * 1 2 3 26 26 H 1.08995 * 109.46961 * 59.99838 * 1 2 3 27 27 H 1.08999 * 109.46927 * 179.97438 * 1 2 3 28 28 H 1.08000 * 120.67994 * 359.95220 * 4 3 2 29 29 H 1.07994 * 120.20876 * 179.74430 * 5 4 3 30 30 H 1.07995 * 120.06522 * 359.97162 * 8 7 6 31 31 H 1.09000 * 109.47309 * 270.23550 * 10 9 8 32 32 H 1.09001 * 109.46638 * 30.23212 * 10 9 8 33 33 H 1.09000 * 109.46776 * 150.23249 * 10 9 8 34 34 H 1.07998 * 119.86879 * 179.74570 * 11 9 8 35 35 H 1.07998 * 119.93761 * 179.97438 * 12 11 9 36 36 H 1.09005 * 109.47076 * 264.60206 * 14 13 12 37 37 H 1.08989 * 109.47586 * 24.59873 * 14 13 12 38 38 H 1.09002 * 109.46964 * 144.60545 * 14 13 12 39 39 H 0.96997 * 119.99718 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0443 1.2076 0.0000 4 6 1.2965 2.3806 0.0005 5 6 1.9639 3.5923 -0.0043 6 6 3.3645 3.6100 0.0009 7 6 4.0786 4.9093 0.0010 8 6 3.7165 5.9069 -0.9036 9 6 4.3814 7.1158 -0.8957 10 6 3.9877 8.1971 -1.8689 11 6 5.4122 7.3356 0.0007 12 6 5.7792 6.3479 0.8968 13 6 5.1178 5.1365 0.9018 14 6 5.5185 4.0617 1.8791 15 7 4.0588 2.4854 0.0005 16 6 3.4556 1.2936 -0.0001 17 6 4.2302 0.1153 -0.0011 18 1 3.7515 -0.8457 0.1157 19 6 5.6201 0.1913 -0.1533 20 7 6.2094 1.3576 -0.2052 21 14 6.6324 -1.3733 -0.2823 22 1 6.1846 -2.1567 -1.4617 23 1 8.0672 -1.0232 -0.4371 24 1 6.4502 -2.1837 0.9486 25 1 -0.3634 0.5137 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 0.2170 2.3460 0.0002 29 1 1.4086 4.5185 -0.0082 30 1 2.9151 5.7347 -1.6067 31 1 4.5656 8.0880 -2.7866 32 1 2.9251 8.1117 -2.0963 33 1 4.1876 9.1734 -1.4274 34 1 5.9326 8.2820 0.0005 35 1 6.5848 6.5249 1.5940 36 1 6.2165 3.3759 1.3989 37 1 5.9961 4.5183 2.7458 38 1 4.6326 3.5132 2.1992 39 1 7.1722 1.4101 -0.3110 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241190761.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:15 Heat of formation + Delta-G solvation = 9.974486 kcal Electronic energy + Delta-G solvation = -21829.831118 eV Core-core repulsion = 18702.186692 eV Total energy + Delta-G solvation = -3127.644426 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.32283 -38.49929 -36.58977 -33.79044 -33.21917 -31.18078 -30.38186 -28.73156 -28.62924 -26.57697 -25.49603 -24.20781 -22.64383 -21.59243 -20.69262 -19.39914 -17.46426 -16.70026 -15.89403 -15.28317 -15.00439 -14.78680 -14.66369 -14.54102 -13.56577 -13.50038 -13.04137 -12.89110 -12.67354 -12.48580 -12.24203 -12.23260 -11.97664 -11.62454 -11.29091 -11.19998 -11.17244 -10.87975 -10.75559 -10.61239 -10.49307 -10.36504 -10.21384 -9.79522 -9.38153 -8.35110 -8.13217 -7.89414 -7.66243 -6.97788 -6.43770 -4.40435 1.78146 1.97554 2.74239 2.92796 3.10494 3.13262 3.19952 3.96966 4.32520 4.40405 4.73020 5.25094 5.25974 5.44678 5.59466 5.67101 5.68787 5.69922 5.81462 5.83308 5.88916 5.95801 6.02321 6.06345 6.10472 6.24358 6.33599 6.55033 6.60927 6.68444 6.75113 6.78634 7.01079 7.05793 7.16462 7.23829 7.35283 7.42705 7.53652 7.65705 7.88286 8.18921 8.28691 8.69921 8.98530 9.99243 10.29606 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.014246 B = 0.006397 C = 0.004813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1964.989222 B = 4375.836135 C = 5816.522023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.309 6.309 3 C -0.029 4.029 4 C -0.148 4.148 5 C -0.269 4.269 6 C 0.151 3.849 7 C -0.004 4.004 8 C -0.105 4.105 9 C -0.108 4.108 10 C -0.106 4.106 11 C -0.127 4.127 12 C -0.129 4.129 13 C -0.048 4.048 14 C -0.102 4.102 15 N -0.442 5.442 16 C 0.251 3.749 17 C -0.413 4.413 18 H 0.089 0.911 19 C 0.069 3.931 20 N -0.713 5.713 21 Si 0.908 3.092 22 H -0.265 1.265 23 H -0.278 1.278 24 H -0.265 1.265 25 H 0.039 0.961 26 H 0.039 0.961 27 H 0.083 0.917 28 H 0.103 0.897 29 H 0.096 0.904 30 H 0.117 0.883 31 H 0.063 0.937 32 H 0.061 0.939 33 H 0.059 0.941 34 H 0.111 0.889 35 H 0.115 0.885 36 H 0.099 0.901 37 H 0.038 0.962 38 H 0.063 0.937 39 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.389 6.410 0.203 6.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.222 6.222 3 C -0.078 4.078 4 C -0.172 4.172 5 C -0.293 4.293 6 C 0.009 3.991 7 C -0.005 4.005 8 C -0.124 4.124 9 C -0.108 4.108 10 C -0.163 4.163 11 C -0.146 4.146 12 C -0.147 4.147 13 C -0.049 4.049 14 C -0.159 4.159 15 N -0.157 5.157 16 C 0.124 3.876 17 C -0.444 4.444 18 H 0.107 0.893 19 C -0.156 4.156 20 N -0.335 5.335 21 Si 0.732 3.268 22 H -0.190 1.190 23 H -0.203 1.203 24 H -0.190 1.190 25 H 0.058 0.942 26 H 0.058 0.942 27 H 0.101 0.899 28 H 0.121 0.879 29 H 0.115 0.885 30 H 0.135 0.865 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.129 0.871 35 H 0.133 0.867 36 H 0.117 0.883 37 H 0.057 0.943 38 H 0.082 0.918 39 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -1.195 6.313 0.186 6.428 hybrid contribution -0.890 -0.456 -0.158 1.013 sum -2.085 5.857 0.028 6.217 Atomic orbital electron populations 1.22753 0.81727 1.01870 0.99928 1.85942 1.18299 1.27893 1.90072 1.20370 0.93732 0.83182 1.10472 1.20860 0.97715 0.92612 1.06005 1.20953 0.94018 0.96156 1.18169 1.19638 0.89359 0.92058 0.98026 1.18593 0.94746 0.92223 0.94920 1.21001 1.00147 0.92517 0.98701 1.19641 0.97483 0.95422 0.98249 1.20693 1.01309 0.96465 0.97827 1.20847 0.97945 0.98934 0.96847 1.20872 1.00328 0.93554 0.99980 1.20022 0.93808 0.94536 0.96552 1.20749 1.02838 0.96683 0.95599 1.69060 1.34458 0.95025 1.17119 1.18167 0.84946 0.92166 0.92342 1.19459 0.91103 0.93105 1.40781 0.89264 1.26033 0.98527 0.97206 0.93874 1.70098 1.10496 1.24489 1.28403 0.86377 0.78382 0.82109 0.79917 1.19015 1.20311 1.18961 0.94198 0.94197 0.89877 0.87883 0.88550 0.86523 0.91803 0.92021 0.92175 0.87051 0.86729 0.88310 0.94258 0.91809 0.91587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.56 9.83 101.05 0.99 1.55 16 2 O -0.31 -7.01 9.62 -18.29 -0.18 -7.19 16 3 C -0.03 -0.72 6.74 -38.06 -0.26 -0.98 16 4 C -0.15 -3.33 9.11 -39.22 -0.36 -3.69 16 5 C -0.27 -6.13 9.49 -38.86 -0.37 -6.50 16 6 C 0.15 3.66 5.46 -82.91 -0.45 3.21 16 7 C 0.00 -0.09 5.60 -104.90 -0.59 -0.67 16 8 C -0.10 -1.98 9.10 -39.23 -0.36 -2.34 16 9 C -0.11 -1.75 5.87 -104.67 -0.61 -2.37 16 10 C -0.11 -1.31 10.01 36.00 0.36 -0.95 16 11 C -0.13 -2.01 9.69 -39.50 -0.38 -2.39 16 12 C -0.13 -2.23 9.67 -39.63 -0.38 -2.61 16 13 C -0.05 -0.98 5.90 -104.27 -0.62 -1.60 16 14 C -0.10 -2.10 8.73 36.00 0.31 -1.79 16 15 N -0.44 -11.74 6.29 -7.56 -0.05 -11.78 16 16 C 0.25 6.82 6.55 -84.86 -0.56 6.26 16 17 C -0.41 -11.00 8.93 -37.86 -0.34 -11.34 16 18 H 0.09 2.32 7.34 -52.49 -0.39 1.94 16 19 C 0.07 1.71 5.49 -17.33 -0.10 1.62 16 20 N -0.71 -18.18 10.76 55.55 0.60 -17.58 16 21 Si 0.91 18.58 29.56 -169.99 -5.03 13.56 16 22 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 23 H -0.28 -5.54 7.11 56.52 0.40 -5.13 16 24 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 25 H 0.04 0.62 7.69 -51.93 -0.40 0.22 16 26 H 0.04 0.62 7.69 -51.93 -0.40 0.22 16 27 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 28 H 0.10 2.00 6.43 -52.49 -0.34 1.66 16 29 H 0.10 1.98 7.99 -52.49 -0.42 1.56 16 30 H 0.12 2.10 8.00 -52.49 -0.42 1.68 16 31 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.06 0.71 8.08 -51.93 -0.42 0.29 16 33 H 0.06 0.63 8.08 -51.93 -0.42 0.22 16 34 H 0.11 1.43 8.06 -52.49 -0.42 1.00 16 35 H 0.11 1.69 8.06 -52.49 -0.42 1.27 16 36 H 0.10 2.23 7.41 -51.93 -0.38 1.84 16 37 H 0.04 0.67 8.05 -51.94 -0.42 0.26 16 38 H 0.06 1.45 7.01 -51.93 -0.36 1.08 16 39 H 0.27 6.40 8.29 -40.82 -0.34 6.06 16 LS Contribution 328.17 15.07 4.95 4.95 Total: -1.00 -28.87 328.17 -8.59 -37.46 By element: Atomic # 1 Polarization: 10.37 SS G_CDS: -5.19 Total: 5.18 kcal Atomic # 6 Polarization: -20.89 SS G_CDS: -3.70 Total: -24.58 kcal Atomic # 7 Polarization: -29.92 SS G_CDS: 0.55 Total: -29.37 kcal Atomic # 8 Polarization: -7.01 SS G_CDS: -0.18 Total: -7.19 kcal Atomic # 14 Polarization: 18.58 SS G_CDS: -5.03 Total: 13.56 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -28.87 -8.59 -37.46 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241190761.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.435 kcal (2) G-P(sol) polarization free energy of solvation -28.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.460 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds