Wall clock time and date at job start Tue Mar 31 2020 05:33:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35531 * 116.99696 * 2 1 4 4 C 1.39112 * 120.48551 * 0.02562 * 3 2 1 5 5 C 1.38334 * 118.63492 * 180.22676 * 4 3 2 6 6 C 1.40071 * 119.57134 * 359.50842 * 5 4 3 7 7 C 1.48257 * 119.51808 * 180.23440 * 6 5 4 8 8 C 1.39446 * 120.12229 * 311.64877 * 7 6 5 9 9 C 1.37975 * 119.86875 * 179.76837 * 8 7 6 10 10 C 1.50698 * 119.93841 * 180.25040 * 9 8 7 11 11 C 1.38366 * 120.12437 * 0.48353 * 9 8 7 12 12 C 1.38320 * 120.26212 * 359.76959 * 11 9 8 13 13 C 1.38018 * 120.12837 * 359.97438 * 12 11 9 14 14 C 1.50697 * 120.06390 * 180.02562 * 13 12 11 15 15 N 1.32175 * 120.96514 * 0.49889 * 6 5 4 16 16 C 1.33577 * 121.46309 * 359.75770 * 15 6 5 17 17 C 1.41006 * 119.83246 * 179.97438 * 16 15 6 18 18 H 1.07998 * 119.99692 * 172.80290 * 17 16 15 19 19 C 1.40028 * 119.99897 * 352.80719 * 17 16 15 20 20 N 1.30770 * 120.00151 * 4.55213 * 19 17 16 21 21 Si 1.86800 * 119.99661 * 184.55324 * 19 17 16 22 22 H 1.48496 * 109.47017 * 59.99832 * 21 19 17 23 23 H 1.48496 * 109.47126 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.47221 * 299.99679 * 21 19 17 25 25 H 1.08997 * 109.47356 * 299.99581 * 1 2 3 26 26 H 1.08995 * 109.46961 * 59.99838 * 1 2 3 27 27 H 1.08999 * 109.46927 * 179.97438 * 1 2 3 28 28 H 1.08000 * 120.67994 * 359.95220 * 4 3 2 29 29 H 1.07994 * 120.20876 * 179.74430 * 5 4 3 30 30 H 1.07995 * 120.06522 * 359.97162 * 8 7 6 31 31 H 1.09000 * 109.47309 * 270.23550 * 10 9 8 32 32 H 1.09001 * 109.46638 * 30.23212 * 10 9 8 33 33 H 1.09000 * 109.46776 * 150.23249 * 10 9 8 34 34 H 1.07998 * 119.86879 * 179.74570 * 11 9 8 35 35 H 1.07998 * 119.93761 * 179.97438 * 12 11 9 36 36 H 1.09005 * 109.47076 * 264.60206 * 14 13 12 37 37 H 1.08989 * 109.47586 * 24.59873 * 14 13 12 38 38 H 1.09002 * 109.46964 * 144.60545 * 14 13 12 39 39 H 0.96997 * 119.99718 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0443 1.2076 0.0000 4 6 1.2965 2.3806 0.0005 5 6 1.9639 3.5923 -0.0043 6 6 3.3645 3.6100 0.0009 7 6 4.0786 4.9093 0.0010 8 6 3.7165 5.9069 -0.9036 9 6 4.3814 7.1158 -0.8957 10 6 3.9877 8.1971 -1.8689 11 6 5.4122 7.3356 0.0007 12 6 5.7792 6.3479 0.8968 13 6 5.1178 5.1365 0.9018 14 6 5.5185 4.0617 1.8791 15 7 4.0588 2.4854 0.0005 16 6 3.4556 1.2936 -0.0001 17 6 4.2302 0.1153 -0.0011 18 1 3.7515 -0.8457 0.1157 19 6 5.6201 0.1913 -0.1533 20 7 6.2094 1.3576 -0.2052 21 14 6.6324 -1.3733 -0.2823 22 1 6.1846 -2.1567 -1.4617 23 1 8.0672 -1.0232 -0.4371 24 1 6.4502 -2.1837 0.9486 25 1 -0.3634 0.5137 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 0.2170 2.3460 0.0002 29 1 1.4086 4.5185 -0.0082 30 1 2.9151 5.7347 -1.6067 31 1 4.5656 8.0880 -2.7866 32 1 2.9251 8.1117 -2.0963 33 1 4.1876 9.1734 -1.4274 34 1 5.9326 8.2820 0.0005 35 1 6.5848 6.5249 1.5940 36 1 6.2165 3.3759 1.3989 37 1 5.9961 4.5183 2.7458 38 1 4.6326 3.5132 2.1992 39 1 7.1722 1.4101 -0.3110 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241190761.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:14 Heat of formation + Delta-G solvation = -4.592206 kcal Electronic energy + Delta-G solvation = -21830.462777 eV Core-core repulsion = 18702.186692 eV Total energy + Delta-G solvation = -3128.276085 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.96449 -40.03580 -38.28496 -35.59692 -34.62747 -32.77682 -32.18201 -30.37621 -29.96491 -28.09561 -27.25637 -25.58139 -24.16974 -23.39404 -22.27191 -20.90233 -19.31780 -18.42462 -17.56312 -16.82294 -16.55453 -16.39100 -16.15836 -16.06373 -15.08068 -14.85133 -14.63718 -14.47392 -14.17546 -14.01864 -13.81426 -13.58677 -13.32993 -13.12269 -12.94745 -12.84346 -12.63813 -12.54486 -12.28425 -12.14177 -12.00572 -11.86254 -11.71810 -11.50938 -11.19882 -10.02503 -9.82207 -9.55657 -9.26019 -8.72687 -8.27484 -6.34633 0.27421 0.58774 0.95657 1.16115 1.41375 1.52387 1.54626 2.25487 2.79626 2.83021 2.98840 3.79211 3.85078 4.07986 4.10462 4.24939 4.26441 4.34441 4.43984 4.45442 4.53976 4.61519 4.70625 4.75231 4.86558 4.90909 4.91352 4.97980 5.01408 5.04576 5.23039 5.27685 5.35222 5.49275 5.60441 5.63999 5.68635 5.75984 5.93189 6.10260 6.25714 6.33071 6.41218 6.82446 7.14722 8.12733 8.46999 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.014246 B = 0.006397 C = 0.004813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1964.989222 B = 4375.836135 C = 5816.522023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.334 6.334 3 C -0.047 4.047 4 C -0.146 4.146 5 C -0.270 4.270 6 C 0.133 3.867 7 C -0.039 4.039 8 C -0.118 4.118 9 C -0.102 4.102 10 C -0.104 4.104 11 C -0.119 4.119 12 C -0.126 4.126 13 C -0.076 4.076 14 C -0.088 4.088 15 N -0.463 5.463 16 C 0.214 3.786 17 C -0.450 4.450 18 H 0.082 0.918 19 C 0.028 3.972 20 N -0.742 5.742 21 Si 0.981 3.019 22 H -0.265 1.265 23 H -0.266 1.266 24 H -0.261 1.261 25 H 0.050 0.950 26 H 0.050 0.950 27 H 0.114 0.886 28 H 0.137 0.863 29 H 0.119 0.881 30 H 0.117 0.883 31 H 0.074 0.926 32 H 0.067 0.933 33 H 0.085 0.915 34 H 0.153 0.847 35 H 0.141 0.859 36 H 0.072 0.928 37 H 0.068 0.932 38 H 0.028 0.972 39 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.330 8.465 -0.183 8.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.247 6.247 3 C -0.095 4.095 4 C -0.170 4.170 5 C -0.294 4.294 6 C -0.009 4.009 7 C -0.040 4.040 8 C -0.137 4.137 9 C -0.102 4.102 10 C -0.161 4.161 11 C -0.137 4.137 12 C -0.144 4.144 13 C -0.077 4.077 14 C -0.145 4.145 15 N -0.177 5.177 16 C 0.086 3.914 17 C -0.482 4.482 18 H 0.100 0.900 19 C -0.194 4.194 20 N -0.364 5.364 21 Si 0.802 3.198 22 H -0.189 1.189 23 H -0.190 1.190 24 H -0.185 1.185 25 H 0.069 0.931 26 H 0.069 0.931 27 H 0.133 0.867 28 H 0.154 0.846 29 H 0.137 0.863 30 H 0.135 0.865 31 H 0.093 0.907 32 H 0.086 0.914 33 H 0.104 0.896 34 H 0.170 0.830 35 H 0.159 0.841 36 H 0.090 0.910 37 H 0.086 0.914 38 H 0.047 0.953 39 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -1.164 8.386 -0.199 8.469 hybrid contribution -1.043 -0.943 -0.041 1.407 sum -2.208 7.443 -0.240 7.767 Atomic orbital electron populations 1.23108 0.78602 1.04402 1.00889 1.85883 1.21547 1.27191 1.90097 1.20423 0.93545 0.84614 1.10955 1.21207 0.99337 0.91759 1.04737 1.21313 0.93970 0.97247 1.16822 1.20221 0.90446 0.92749 0.97476 1.18723 0.96278 0.91888 0.97076 1.21129 1.00907 0.93212 0.98429 1.20112 0.96509 0.95133 0.98447 1.20771 1.01933 0.96105 0.97276 1.21331 0.97226 0.99924 0.95245 1.21182 1.00227 0.92430 1.00574 1.20111 0.94754 0.95827 0.97016 1.20534 1.00779 0.96477 0.96721 1.69027 1.35539 0.95526 1.17634 1.18632 0.86681 0.92811 0.93291 1.19632 0.92440 0.92900 1.43224 0.89991 1.26823 0.98924 1.00550 0.93079 1.70200 1.10871 1.26388 1.28916 0.85284 0.76992 0.77790 0.79761 1.18935 1.19034 1.18523 0.93104 0.93104 0.86732 0.84566 0.86301 0.86461 0.90743 0.91352 0.89572 0.82966 0.84096 0.90978 0.91357 0.95255 0.91192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.81 9.83 113.37 1.11 1.92 16 2 O -0.33 -15.47 9.62 -88.35 -0.85 -16.32 16 3 C -0.05 -2.41 6.74 23.26 0.16 -2.25 16 4 C -0.15 -6.64 9.11 22.50 0.21 -6.44 16 5 C -0.27 -12.51 9.49 22.74 0.22 -12.29 16 6 C 0.13 6.69 5.46 42.20 0.23 6.92 16 7 C -0.04 -1.72 5.60 -20.04 -0.11 -1.83 16 8 C -0.12 -4.38 9.10 22.50 0.20 -4.17 16 9 C -0.10 -3.02 5.87 -19.90 -0.12 -3.14 16 10 C -0.10 -2.16 10.01 71.24 0.71 -1.45 16 11 C -0.12 -3.33 9.69 22.32 0.22 -3.11 16 12 C -0.13 -4.08 9.67 22.24 0.22 -3.87 16 13 C -0.08 -3.13 5.90 -19.64 -0.12 -3.25 16 14 C -0.09 -3.79 8.73 71.23 0.62 -3.17 16 15 N -0.46 -25.96 6.29 -177.85 -1.12 -27.08 16 16 C 0.21 12.26 6.55 40.33 0.26 12.53 16 17 C -0.45 -25.40 8.93 23.38 0.21 -25.19 16 18 H 0.08 4.53 7.34 -2.91 -0.02 4.51 16 19 C 0.03 1.47 5.49 85.28 0.47 1.94 16 20 N -0.74 -39.71 10.76 21.84 0.23 -39.47 16 21 Si 0.98 39.43 29.56 68.60 2.03 41.45 16 22 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 23 H -0.27 -10.04 7.11 99.48 0.71 -9.33 16 24 H -0.26 -10.19 7.11 99.48 0.71 -9.48 16 25 H 0.05 1.51 7.69 -2.39 -0.02 1.49 16 26 H 0.05 1.51 7.69 -2.39 -0.02 1.49 16 27 H 0.11 2.90 8.14 -2.39 -0.02 2.88 16 28 H 0.14 5.09 6.43 -2.91 -0.02 5.08 16 29 H 0.12 4.82 7.99 -2.91 -0.02 4.80 16 30 H 0.12 4.18 8.00 -2.91 -0.02 4.16 16 31 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.07 1.34 8.08 -2.39 -0.02 1.32 16 33 H 0.09 1.37 8.08 -2.39 -0.02 1.35 16 34 H 0.15 3.03 8.06 -2.91 -0.02 3.00 16 35 H 0.14 3.72 8.06 -2.91 -0.02 3.70 16 36 H 0.07 3.45 7.41 -2.38 -0.02 3.43 16 37 H 0.07 2.39 8.05 -2.39 -0.02 2.37 16 38 H 0.03 1.40 7.01 -2.39 -0.02 1.39 16 39 H 0.28 13.56 8.29 -92.71 -0.77 12.80 16 Total: -1.00 -67.53 328.17 5.83 -61.69 By element: Atomic # 1 Polarization: 25.52 SS G_CDS: 1.05 Total: 26.57 kcal Atomic # 6 Polarization: -51.33 SS G_CDS: 4.49 Total: -46.84 kcal Atomic # 7 Polarization: -65.67 SS G_CDS: -0.88 Total: -66.55 kcal Atomic # 8 Polarization: -15.47 SS G_CDS: -0.85 Total: -16.32 kcal Atomic # 14 Polarization: 39.43 SS G_CDS: 2.03 Total: 41.45 kcal Total: -67.53 5.83 -61.69 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241190761.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.101 kcal (2) G-P(sol) polarization free energy of solvation -67.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds