Wall clock time and date at job start Tue Mar 31 2020 05:53:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35616 * 116.99938 * 2 1 4 4 N 1.32160 * 119.76657 * 359.97204 * 3 2 1 5 5 C 1.31956 * 121.77495 * 180.02562 * 4 3 2 6 6 C 1.38194 * 121.10311 * 0.02562 * 5 4 3 7 7 C 1.50693 * 120.29930 * 180.02562 * 6 5 4 8 8 C 1.38556 * 119.40392 * 359.74484 * 6 5 4 9 9 C 1.39552 * 118.37628 * 0.49736 * 8 6 5 10 10 C 1.48324 * 120.56387 * 179.77931 * 9 8 6 11 11 C 1.39367 * 120.12209 * 129.71732 * 10 9 8 12 12 C 1.38017 * 119.87229 * 179.97438 * 11 10 9 13 13 C 1.38325 * 120.12186 * 0.27920 * 12 11 10 14 14 C 1.50699 * 119.87219 * 179.72080 * 13 12 11 15 15 C 1.50699 * 109.47115 * 90.00040 * 14 13 12 16 16 H 1.08002 * 120.00071 * 359.97438 * 15 14 13 17 17 C 1.37879 * 120.00208 * 179.97438 * 15 14 13 18 18 N 1.31511 * 119.99705 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 120.00080 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.46900 * 60.00593 * 19 17 15 21 21 H 1.48506 * 109.47092 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.47127 * 300.00237 * 19 17 15 23 23 C 1.38322 * 120.25277 * 359.44565 * 13 12 11 24 24 C 1.38015 * 120.12222 * 0.55024 * 23 13 12 25 25 H 1.09008 * 109.46840 * 179.97438 * 1 2 3 26 26 H 1.08992 * 109.47427 * 300.00424 * 1 2 3 27 27 H 1.09003 * 109.46903 * 60.00321 * 1 2 3 28 28 H 1.07999 * 119.45148 * 180.02562 * 5 4 3 29 29 H 1.08997 * 109.47416 * 89.99891 * 7 6 5 30 30 H 1.08998 * 109.47336 * 210.00107 * 7 6 5 31 31 H 1.09004 * 109.46919 * 329.99986 * 7 6 5 32 32 H 1.07996 * 120.80853 * 180.25368 * 8 6 5 33 33 H 1.08000 * 120.06539 * 359.95847 * 11 10 9 34 34 H 1.08002 * 119.93521 * 179.97438 * 12 11 10 35 35 H 1.09006 * 109.46975 * 210.00258 * 14 13 12 36 36 H 1.09003 * 109.47284 * 330.00001 * 14 13 12 37 37 H 0.97001 * 120.00203 * 179.97438 * 18 17 15 38 38 H 1.08001 * 119.94354 * 180.27571 * 23 13 12 39 39 H 1.08004 * 120.06283 * 179.74400 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0446 1.2084 0.0000 4 7 1.3203 2.3138 -0.0006 5 6 1.8778 3.5098 -0.0011 6 6 3.2519 3.6569 -0.0016 7 6 3.8693 5.0316 -0.0016 8 6 4.0568 2.5292 0.0038 9 6 3.4427 1.2760 -0.0010 10 6 4.2577 0.0367 -0.0005 11 6 3.9949 -0.9727 0.9237 12 6 4.7561 -2.1240 0.9193 13 6 5.7819 -2.2744 0.0035 14 6 6.6136 -3.5311 0.0078 15 6 5.9858 -4.5520 -0.9057 16 1 5.0753 -4.3148 -1.4360 17 6 6.5737 -5.7891 -1.0646 18 7 7.6821 -6.0781 -0.4185 19 14 5.7951 -7.0548 -2.1964 20 1 5.7275 -6.5099 -3.5762 21 1 6.6147 -8.2932 -2.1923 22 1 4.4238 -7.3678 -1.7200 23 6 6.0435 -1.2782 -0.9197 24 6 5.2887 -0.1227 -0.9245 25 1 -0.3633 -1.0278 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.2497 4.3884 -0.0011 29 1 4.0186 5.3629 1.0260 30 1 4.8298 4.9985 -0.5158 31 1 3.2061 5.7277 -0.5151 32 1 5.1331 2.6178 0.0076 33 1 3.1973 -0.8543 1.6422 34 1 4.5537 -2.9068 1.6353 35 1 7.6205 -3.3016 -0.3412 36 1 6.6625 -3.9311 1.0206 37 1 8.0955 -6.9485 -0.5299 38 1 6.8428 -1.4027 -1.6353 39 1 5.4965 0.6563 -1.6432 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241363243.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:05 Heat of formation + Delta-G solvation = 5.364464 kcal Electronic energy + Delta-G solvation = -20926.646321 eV Core-core repulsion = 17798.801990 eV Total energy + Delta-G solvation = -3127.844331 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.77047 -38.45288 -37.99002 -34.02980 -33.25366 -32.52458 -30.30210 -30.19375 -27.92603 -26.87528 -26.34484 -23.99864 -22.86202 -21.86719 -21.55020 -19.96057 -18.37932 -17.16043 -16.34416 -16.06400 -15.98809 -14.86576 -14.75131 -14.44815 -14.26670 -14.13094 -13.98239 -13.48538 -12.98873 -12.83082 -12.74946 -12.57016 -12.53876 -12.05087 -11.80436 -11.76469 -11.30258 -11.10172 -11.03516 -10.73163 -10.55017 -10.24205 -9.91052 -9.70649 -9.47980 -9.41115 -8.45799 -8.41725 -8.26827 -7.51634 -6.03669 -4.07569 0.92051 1.20386 2.09116 2.14729 3.12383 3.32970 3.36673 3.40408 3.67916 4.22877 4.37628 4.53354 4.69287 4.74803 4.89121 5.08442 5.23156 5.27668 5.28387 5.30610 5.38365 5.50191 5.54685 5.59386 5.64371 5.72221 5.89196 6.00408 6.13257 6.23942 6.26043 6.39607 6.66236 6.71438 7.09145 7.17901 7.19664 7.27531 7.50405 7.71530 7.80038 7.85638 7.92215 8.32330 8.97603 9.56185 11.06087 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.024426 B = 0.003693 C = 0.003374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.021217 B = 7580.287405 C = 8297.279085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.293 6.293 3 C 0.320 3.680 4 N -0.537 5.537 5 C 0.126 3.874 6 C -0.176 4.176 7 C -0.102 4.102 8 C -0.040 4.040 9 C -0.086 4.086 10 C -0.081 4.081 11 C -0.088 4.088 12 C -0.126 4.126 13 C -0.024 4.024 14 C 0.046 3.954 15 C -0.512 4.512 16 H 0.057 0.943 17 C 0.058 3.942 18 N -0.895 5.895 19 Si 0.896 3.104 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.276 1.276 23 C -0.127 4.127 24 C -0.104 4.104 25 H 0.096 0.904 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.155 0.845 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.141 0.859 33 H 0.111 0.889 34 H 0.119 0.881 35 H 0.029 0.971 36 H 0.029 0.971 37 H 0.263 0.737 38 H 0.120 0.880 39 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.055 19.783 1.752 22.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.199 6.199 3 C 0.141 3.859 4 N -0.260 5.260 5 C -0.029 4.029 6 C -0.179 4.179 7 C -0.159 4.159 8 C -0.065 4.065 9 C -0.089 4.089 10 C -0.082 4.082 11 C -0.106 4.106 12 C -0.144 4.144 13 C -0.024 4.024 14 C 0.009 3.991 15 C -0.550 4.550 16 H 0.075 0.925 17 C -0.143 4.143 18 N -0.534 5.534 19 Si 0.723 3.277 20 H -0.202 1.202 21 H -0.212 1.212 22 H -0.201 1.201 23 C -0.145 4.145 24 C -0.122 4.122 25 H 0.114 0.886 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.172 0.828 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.159 0.841 33 H 0.129 0.871 34 H 0.137 0.863 35 H 0.047 0.953 36 H 0.047 0.953 37 H 0.072 0.928 38 H 0.138 0.862 39 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -10.746 19.272 1.779 22.137 hybrid contribution 0.146 -0.617 -0.665 0.919 sum -10.599 18.656 1.114 21.485 Atomic orbital electron populations 1.22852 0.77752 1.02987 1.01992 1.86378 1.22270 1.23924 1.87314 1.19906 0.88715 0.84678 0.92643 1.67262 1.40694 0.98695 1.19369 1.22218 0.92154 0.93515 0.95015 1.20668 0.94706 0.96577 1.05923 1.20612 1.00800 0.92178 1.02321 1.21446 1.00454 0.89885 0.94754 1.18876 0.90037 0.94413 1.05544 1.18165 0.97568 0.93274 0.99188 1.20984 0.98567 0.93167 0.97875 1.21015 0.96261 0.96899 1.00208 1.20784 0.94365 0.95841 0.91423 1.18387 0.94218 0.88319 0.98154 1.21025 1.09841 0.97771 1.26367 0.92470 1.25007 0.94960 0.98306 0.96027 1.69945 1.18758 1.22431 1.42235 0.86592 0.79285 0.80543 0.81249 1.20151 1.21236 1.20143 1.20990 1.00558 0.93393 0.99521 1.21008 0.95383 0.97866 0.97967 0.88598 0.92557 0.92567 0.82796 0.91263 0.91424 0.91484 0.84112 0.87085 0.86254 0.95264 0.95263 0.92784 0.86225 0.87107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.45 10.38 101.05 1.05 1.50 16 2 O -0.29 -4.50 8.85 -18.55 -0.16 -4.67 16 3 C 0.32 4.84 7.42 -16.76 -0.12 4.72 16 4 N -0.54 -7.28 9.21 -13.06 -0.12 -7.40 16 5 C 0.13 1.38 10.84 -17.51 -0.19 1.19 16 6 C -0.18 -1.81 5.89 -104.52 -0.62 -2.43 16 7 C -0.10 -0.70 10.03 36.00 0.36 -0.34 16 8 C -0.04 -0.49 9.36 -38.97 -0.36 -0.86 16 9 C -0.09 -1.29 5.49 -104.61 -0.57 -1.86 16 10 C -0.08 -1.39 5.29 -104.91 -0.56 -1.94 16 11 C -0.09 -1.58 8.80 -39.24 -0.35 -1.92 16 12 C -0.13 -2.53 9.68 -39.63 -0.38 -2.91 16 13 C -0.02 -0.53 5.07 -104.56 -0.53 -1.06 16 14 C 0.05 1.19 5.10 -29.04 -0.15 1.04 16 15 C -0.51 -14.45 9.09 -34.44 -0.31 -14.76 16 16 H 0.06 1.61 7.74 -52.49 -0.41 1.21 16 17 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 18 N -0.89 -26.49 13.29 55.43 0.74 -25.75 16 19 Si 0.90 21.69 29.54 -169.99 -5.02 16.67 16 20 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 21 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 22 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 23 C -0.13 -2.49 9.68 -39.63 -0.38 -2.88 16 24 C -0.10 -1.79 9.54 -39.24 -0.37 -2.16 16 25 H 0.10 0.91 8.14 -51.92 -0.42 0.48 16 26 H 0.06 0.60 8.10 -51.93 -0.42 0.17 16 27 H 0.06 0.61 8.11 -51.93 -0.42 0.19 16 28 H 0.15 1.19 8.06 -52.49 -0.42 0.76 16 29 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.43 8.09 -51.93 -0.42 0.01 16 31 H 0.07 0.37 8.09 -51.93 -0.42 -0.05 16 32 H 0.14 1.48 8.06 -52.49 -0.42 1.06 16 33 H 0.11 1.83 7.70 -52.49 -0.40 1.43 16 34 H 0.12 2.32 8.06 -52.49 -0.42 1.90 16 35 H 0.03 0.79 8.09 -51.93 -0.42 0.37 16 36 H 0.03 0.79 8.08 -51.93 -0.42 0.37 16 37 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 38 H 0.12 2.27 8.06 -52.49 -0.42 1.85 16 39 H 0.11 1.61 8.05 -52.48 -0.42 1.19 16 LS Contribution 338.23 15.07 5.10 5.10 Total: -1.00 -31.54 338.23 -8.49 -40.03 By element: Atomic # 1 Polarization: 4.56 SS G_CDS: -5.43 Total: -0.87 kcal Atomic # 6 Polarization: -19.52 SS G_CDS: -3.59 Total: -23.11 kcal Atomic # 7 Polarization: -33.77 SS G_CDS: 0.62 Total: -33.15 kcal Atomic # 8 Polarization: -4.50 SS G_CDS: -0.16 Total: -4.67 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -31.54 -8.49 -40.03 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241363243.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.396 kcal (2) G-P(sol) polarization free energy of solvation -31.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.031 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds