Wall clock time and date at job start Tue Mar 31 2020 05:53:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35616 * 116.99938 * 2 1 4 4 N 1.32160 * 119.76657 * 359.97204 * 3 2 1 5 5 C 1.31956 * 121.77495 * 180.02562 * 4 3 2 6 6 C 1.38194 * 121.10311 * 0.02562 * 5 4 3 7 7 C 1.50693 * 120.29930 * 180.02562 * 6 5 4 8 8 C 1.38556 * 119.40392 * 359.74484 * 6 5 4 9 9 C 1.39552 * 118.37628 * 0.49736 * 8 6 5 10 10 C 1.48324 * 120.56387 * 179.77931 * 9 8 6 11 11 C 1.39367 * 120.12209 * 129.71732 * 10 9 8 12 12 C 1.38017 * 119.87229 * 179.97438 * 11 10 9 13 13 C 1.38325 * 120.12186 * 0.27920 * 12 11 10 14 14 C 1.50699 * 119.87219 * 179.72080 * 13 12 11 15 15 C 1.50699 * 109.47115 * 90.00040 * 14 13 12 16 16 H 1.08002 * 120.00071 * 359.97438 * 15 14 13 17 17 C 1.37879 * 120.00208 * 179.97438 * 15 14 13 18 18 N 1.31511 * 119.99705 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 120.00080 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.46900 * 60.00593 * 19 17 15 21 21 H 1.48506 * 109.47092 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.47127 * 300.00237 * 19 17 15 23 23 C 1.38322 * 120.25277 * 359.44565 * 13 12 11 24 24 C 1.38015 * 120.12222 * 0.55024 * 23 13 12 25 25 H 1.09008 * 109.46840 * 179.97438 * 1 2 3 26 26 H 1.08992 * 109.47427 * 300.00424 * 1 2 3 27 27 H 1.09003 * 109.46903 * 60.00321 * 1 2 3 28 28 H 1.07999 * 119.45148 * 180.02562 * 5 4 3 29 29 H 1.08997 * 109.47416 * 89.99891 * 7 6 5 30 30 H 1.08998 * 109.47336 * 210.00107 * 7 6 5 31 31 H 1.09004 * 109.46919 * 329.99986 * 7 6 5 32 32 H 1.07996 * 120.80853 * 180.25368 * 8 6 5 33 33 H 1.08000 * 120.06539 * 359.95847 * 11 10 9 34 34 H 1.08002 * 119.93521 * 179.97438 * 12 11 10 35 35 H 1.09006 * 109.46975 * 210.00258 * 14 13 12 36 36 H 1.09003 * 109.47284 * 330.00001 * 14 13 12 37 37 H 0.97001 * 120.00203 * 179.97438 * 18 17 15 38 38 H 1.08001 * 119.94354 * 180.27571 * 23 13 12 39 39 H 1.08004 * 120.06283 * 179.74400 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0446 1.2084 0.0000 4 7 1.3203 2.3138 -0.0006 5 6 1.8778 3.5098 -0.0011 6 6 3.2519 3.6569 -0.0016 7 6 3.8693 5.0316 -0.0016 8 6 4.0568 2.5292 0.0038 9 6 3.4427 1.2760 -0.0010 10 6 4.2577 0.0367 -0.0005 11 6 3.9949 -0.9727 0.9237 12 6 4.7561 -2.1240 0.9193 13 6 5.7819 -2.2744 0.0035 14 6 6.6136 -3.5311 0.0078 15 6 5.9858 -4.5520 -0.9057 16 1 5.0753 -4.3148 -1.4360 17 6 6.5737 -5.7891 -1.0646 18 7 7.6821 -6.0781 -0.4185 19 14 5.7951 -7.0548 -2.1964 20 1 5.7275 -6.5099 -3.5762 21 1 6.6147 -8.2932 -2.1923 22 1 4.4238 -7.3678 -1.7200 23 6 6.0435 -1.2782 -0.9197 24 6 5.2887 -0.1227 -0.9245 25 1 -0.3633 -1.0278 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.2497 4.3884 -0.0011 29 1 4.0186 5.3629 1.0260 30 1 4.8298 4.9985 -0.5158 31 1 3.2061 5.7277 -0.5151 32 1 5.1331 2.6178 0.0076 33 1 3.1973 -0.8543 1.6422 34 1 4.5537 -2.9068 1.6353 35 1 7.6205 -3.3016 -0.3412 36 1 6.6625 -3.9311 1.0206 37 1 8.0955 -6.9485 -0.5299 38 1 6.8428 -1.4027 -1.6353 39 1 5.4965 0.6563 -1.6432 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241363243.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:04 Heat of formation + Delta-G solvation = -12.560537 kcal Electronic energy + Delta-G solvation = -20927.423608 eV Core-core repulsion = 17798.801990 eV Total energy + Delta-G solvation = -3128.621618 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.76937 -39.91854 -38.96367 -35.74546 -34.35380 -33.95306 -31.78958 -31.73856 -28.77744 -28.58846 -27.13979 -25.61919 -24.14433 -23.32033 -22.75593 -21.41203 -19.35284 -18.52417 -18.14235 -17.39190 -17.01114 -16.65393 -15.95582 -15.84848 -15.51425 -15.19340 -14.79003 -14.63251 -14.51502 -14.26354 -14.03928 -13.63362 -13.50651 -13.28495 -13.27243 -13.05791 -12.78628 -12.60801 -12.51726 -12.30323 -11.99864 -11.84116 -11.59781 -11.43085 -10.82224 -10.62361 -10.60943 -9.75526 -9.58348 -8.89339 -8.20338 -6.34346 -0.13171 0.27922 0.60046 0.74449 1.38894 1.41649 1.50043 2.17865 2.39041 2.70716 3.01322 3.09558 3.30840 3.70712 3.91371 4.03282 4.11467 4.17569 4.25019 4.33014 4.39557 4.42205 4.44620 4.67742 4.71405 4.72950 4.88858 4.93351 4.98257 5.10602 5.12017 5.21729 5.32816 5.38611 5.39651 5.55945 5.63928 5.66033 5.74656 6.06898 6.09805 6.23239 6.30134 6.77792 6.84417 7.34033 8.88166 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.024426 B = 0.003693 C = 0.003374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.021217 B = 7580.287405 C = 8297.279085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.320 6.320 3 C 0.302 3.698 4 N -0.548 5.548 5 C 0.128 3.872 6 C -0.167 4.167 7 C -0.100 4.100 8 C -0.038 4.038 9 C -0.117 4.117 10 C -0.065 4.065 11 C -0.088 4.088 12 C -0.134 4.134 13 C -0.057 4.057 14 C 0.056 3.944 15 C -0.531 4.531 16 H 0.052 0.948 17 C 0.006 3.994 18 N -0.929 5.929 19 Si 0.965 3.035 20 H -0.268 1.268 21 H -0.278 1.278 22 H -0.269 1.269 23 C -0.133 4.133 24 C -0.098 4.098 25 H 0.111 0.889 26 H 0.061 0.939 27 H 0.058 0.942 28 H 0.190 0.810 29 H 0.081 0.919 30 H 0.074 0.926 31 H 0.086 0.914 32 H 0.157 0.843 33 H 0.124 0.876 34 H 0.114 0.886 35 H 0.006 0.994 36 H 0.003 0.997 37 H 0.266 0.734 38 H 0.120 0.880 39 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.593 22.513 0.861 25.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.227 6.227 3 C 0.124 3.876 4 N -0.271 5.271 5 C -0.028 4.028 6 C -0.169 4.169 7 C -0.157 4.157 8 C -0.063 4.063 9 C -0.119 4.119 10 C -0.065 4.065 11 C -0.106 4.106 12 C -0.153 4.153 13 C -0.057 4.057 14 C 0.019 3.981 15 C -0.568 4.568 16 H 0.070 0.930 17 C -0.193 4.193 18 N -0.569 5.569 19 Si 0.789 3.211 20 H -0.193 1.193 21 H -0.204 1.204 22 H -0.194 1.194 23 C -0.151 4.151 24 C -0.116 4.116 25 H 0.129 0.871 26 H 0.080 0.920 27 H 0.077 0.923 28 H 0.207 0.793 29 H 0.099 0.901 30 H 0.093 0.907 31 H 0.105 0.895 32 H 0.174 0.826 33 H 0.142 0.858 34 H 0.132 0.868 35 H 0.025 0.975 36 H 0.022 0.978 37 H 0.075 0.925 38 H 0.138 0.862 39 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -12.291 22.013 0.891 25.228 hybrid contribution 0.547 -1.233 -0.347 1.393 sum -11.744 20.780 0.544 23.876 Atomic orbital electron populations 1.23012 0.76212 1.04146 1.02337 1.86326 1.24028 1.24740 1.87587 1.20025 0.88896 0.85091 0.93633 1.67328 1.40885 0.99138 1.19792 1.22934 0.93172 0.93652 0.93012 1.21046 0.94415 0.97685 1.03738 1.20706 1.01372 0.90176 1.03478 1.21717 1.01525 0.89390 0.93708 1.18848 0.90009 0.94354 1.08733 1.18437 0.96761 0.93743 0.97577 1.21093 0.98387 0.92648 0.98477 1.20991 0.96408 0.97873 0.99981 1.20477 0.95710 0.95387 0.94165 1.18117 0.93799 0.90096 0.96053 1.21340 1.09826 0.98863 1.26817 0.92960 1.25913 0.95390 1.00422 0.97535 1.70067 1.20079 1.23146 1.43607 0.85507 0.78529 0.77848 0.79235 1.19254 1.20356 1.19392 1.21037 1.01146 0.93877 0.99043 1.21251 0.94627 0.97423 0.98252 0.87121 0.91990 0.92346 0.79339 0.90076 0.90659 0.89524 0.82559 0.85797 0.86837 0.97521 0.97825 0.92496 0.86219 0.83926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.82 10.38 113.37 1.18 2.00 16 2 O -0.32 -9.63 8.85 -89.27 -0.79 -10.42 16 3 C 0.30 8.71 7.42 85.06 0.63 9.34 16 4 N -0.55 -13.59 9.21 -308.17 -2.84 -16.42 16 5 C 0.13 2.32 10.84 84.66 0.92 3.24 16 6 C -0.17 -2.78 5.89 -19.80 -0.12 -2.90 16 7 C -0.10 -0.91 10.03 71.23 0.71 -0.19 16 8 C -0.04 -0.82 9.36 22.66 0.21 -0.61 16 9 C -0.12 -3.29 5.49 -19.85 -0.11 -3.40 16 10 C -0.06 -2.14 5.29 -20.05 -0.11 -2.25 16 11 C -0.09 -3.18 8.80 22.49 0.20 -2.98 16 12 C -0.13 -5.62 9.68 22.24 0.22 -5.41 16 13 C -0.06 -2.64 5.07 -19.82 -0.10 -2.74 16 14 C 0.06 3.09 5.10 29.10 0.15 3.24 16 15 C -0.53 -31.11 9.09 25.60 0.23 -30.87 16 16 H 0.05 3.04 7.74 -2.91 -0.02 3.02 16 17 C 0.01 0.33 5.46 84.66 0.46 0.79 16 18 N -0.93 -56.68 13.29 21.45 0.28 -56.39 16 19 Si 0.96 45.05 29.54 68.60 2.03 47.08 16 20 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 21 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 22 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 23 C -0.13 -5.34 9.68 22.24 0.22 -5.12 16 24 C -0.10 -3.25 9.54 22.49 0.21 -3.04 16 25 H 0.11 1.99 8.14 -2.38 -0.02 1.98 16 26 H 0.06 1.25 8.10 -2.39 -0.02 1.23 16 27 H 0.06 1.22 8.11 -2.39 -0.02 1.20 16 28 H 0.19 1.99 8.06 -2.91 -0.02 1.97 16 29 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.07 0.62 8.09 -2.39 -0.02 0.60 16 31 H 0.09 0.49 8.09 -2.39 -0.02 0.47 16 32 H 0.16 2.77 8.06 -2.91 -0.02 2.74 16 33 H 0.12 4.09 7.70 -2.91 -0.02 4.07 16 34 H 0.11 4.71 8.06 -2.91 -0.02 4.69 16 35 H 0.01 0.38 8.09 -2.38 -0.02 0.36 16 36 H 0.00 0.20 8.08 -2.39 -0.02 0.18 16 37 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 38 H 0.12 4.67 8.06 -2.91 -0.02 4.65 16 39 H 0.14 3.79 8.05 -2.91 -0.02 3.77 16 Total: -1.00 -70.39 338.23 4.62 -65.77 By element: Atomic # 1 Polarization: 10.26 SS G_CDS: 1.03 Total: 11.30 kcal Atomic # 6 Polarization: -45.81 SS G_CDS: 4.91 Total: -40.91 kcal Atomic # 7 Polarization: -70.26 SS G_CDS: -2.55 Total: -72.81 kcal Atomic # 8 Polarization: -9.63 SS G_CDS: -0.79 Total: -10.42 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal Total: -70.39 4.62 -65.77 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241363243.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.208 kcal (2) G-P(sol) polarization free energy of solvation -70.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds