Wall clock time and date at job start Tue Mar 31 2020 05:53:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35543 * 117.00257 * 2 1 4 4 N 1.32146 * 119.79352 * 0.02562 * 3 2 1 5 5 C 1.31960 * 121.80048 * 179.97438 * 4 3 2 6 6 C 1.38314 * 121.16713 * 0.02562 * 5 4 3 7 7 C 1.50695 * 120.27622 * 179.97438 * 6 5 4 8 8 C 1.38419 * 119.44459 * 359.70123 * 6 5 4 9 9 C 1.39876 * 118.35249 * 0.54191 * 8 6 5 10 10 C 1.47844 * 120.58742 * 179.75717 * 9 8 6 11 11 C 1.40022 * 119.88875 * 309.69311 * 10 9 8 12 12 C 1.36195 * 120.11750 * 179.71789 * 11 10 9 13 13 C 1.40978 * 119.87836 * 0.55849 * 12 11 10 14 14 C 1.40989 * 120.11114 * 179.73867 * 13 12 11 15 15 H 1.07998 * 120.00132 * 206.55143 * 14 13 12 16 16 C 1.39988 * 120.00008 * 26.55566 * 14 13 12 17 17 N 1.30819 * 119.99936 * 16.44364 * 16 14 13 18 18 Si 1.86799 * 120.00204 * 196.44542 * 16 14 13 19 19 H 1.48498 * 109.46951 * 265.18881 * 18 16 14 20 20 H 1.48495 * 109.47248 * 25.18856 * 18 16 14 21 21 H 1.48505 * 109.47138 * 145.19184 * 18 16 14 22 22 C 1.40939 * 119.77741 * 359.46659 * 13 12 11 23 23 C 1.50702 * 120.05675 * 180.22645 * 22 13 12 24 24 C 1.36226 * 119.88164 * 0.25128 * 22 13 12 25 25 H 1.08999 * 109.47287 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47340 * 300.00074 * 1 2 3 27 27 H 1.09003 * 109.47267 * 60.00189 * 1 2 3 28 28 H 1.08002 * 119.41963 * 180.02562 * 5 4 3 29 29 H 1.09005 * 109.47078 * 90.00263 * 7 6 5 30 30 H 1.09002 * 109.47159 * 210.00036 * 7 6 5 31 31 H 1.08999 * 109.47526 * 330.00919 * 7 6 5 32 32 H 1.08002 * 120.82134 * 180.29066 * 8 6 5 33 33 H 1.08008 * 119.94339 * 359.97438 * 11 10 9 34 34 H 1.08000 * 120.06131 * 180.29786 * 12 11 10 35 35 H 0.96999 * 119.99885 * 179.97438 * 17 16 14 36 36 H 1.08996 * 109.46772 * 90.00531 * 23 22 13 37 37 H 1.09000 * 109.46768 * 209.99847 * 23 22 13 38 38 H 1.09001 * 109.47301 * 330.00044 * 23 22 13 39 39 H 1.07997 * 119.94390 * 179.97438 * 24 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0443 1.2077 0.0000 4 7 1.3207 2.3134 0.0005 5 6 1.8783 3.5094 0.0010 6 6 3.2534 3.6581 0.0005 7 6 3.8689 5.0336 0.0006 8 6 4.0595 2.5328 0.0058 9 6 3.4457 1.2760 -0.0002 10 6 4.2592 0.0415 -0.0005 11 6 5.2942 -0.1119 -0.9309 12 6 6.0502 -1.2448 -0.9315 13 6 5.7815 -2.2690 -0.0008 14 6 6.5574 -3.4462 -0.0008 15 1 6.1369 -4.3702 0.3675 16 6 7.8731 -3.4172 -0.4780 17 7 8.4924 -2.2736 -0.6201 18 14 8.7447 -5.0114 -0.9119 19 1 9.5478 -5.4687 0.2504 20 1 7.7385 -6.0477 -1.2566 21 1 9.6406 -4.7852 -2.0744 22 6 4.7381 -2.1099 0.9332 23 6 4.4486 -3.1986 1.9343 24 6 3.9916 -0.9704 0.9292 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.2498 4.3877 0.0019 29 1 4.0177 5.3651 1.0283 30 1 4.8294 5.0019 -0.5137 31 1 3.2047 5.7289 -0.5127 32 1 5.1357 2.6231 0.0102 33 1 5.4962 0.6713 -1.6467 34 1 6.8515 -1.3601 -1.6465 35 1 9.4042 -2.2536 -0.9504 36 1 5.0363 -3.0283 2.8363 37 1 3.3878 -3.1891 2.1846 38 1 4.7123 -4.1656 1.5059 39 1 3.1916 -0.8476 1.6443 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241363946.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:07 Heat of formation + Delta-G solvation = 0.311115 kcal Electronic energy + Delta-G solvation = -21460.633091 eV Core-core repulsion = 18332.569630 eV Total energy + Delta-G solvation = -3128.063461 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.22596 -37.75833 -37.54232 -34.05627 -32.88694 -32.42180 -30.82857 -28.97888 -27.59158 -26.23587 -25.96889 -24.92315 -22.81185 -21.80778 -20.41236 -19.24800 -17.94073 -17.26370 -16.65565 -15.59390 -15.41250 -14.87240 -14.25633 -14.00959 -13.83412 -13.80114 -13.57564 -12.89739 -12.65979 -12.59022 -12.41673 -12.34721 -11.98108 -11.78824 -11.56730 -11.41212 -11.20574 -11.13827 -10.90489 -10.72868 -10.60432 -10.44574 -9.70452 -9.50432 -9.35004 -9.16075 -9.03889 -7.95814 -7.37650 -7.09261 -6.82730 -4.36710 1.46323 1.67601 2.73394 3.02995 3.06951 3.09968 3.16916 3.56272 3.87002 4.15300 4.58684 4.68701 5.11651 5.18306 5.34168 5.46646 5.53839 5.60606 5.66839 5.68103 5.76544 5.86973 5.97165 6.15874 6.24193 6.33203 6.42996 6.44975 6.63657 6.72018 6.73203 6.86906 6.96254 7.08358 7.24225 7.37023 7.64738 7.69554 7.89308 8.00867 8.08040 8.24819 8.27695 8.57343 8.82025 8.93203 10.09530 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.022262 B = 0.004543 C = 0.003968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.463248 B = 6161.886367 C = 7054.523669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.290 6.290 3 C 0.300 3.700 4 N -0.539 5.539 5 C 0.102 3.898 6 C -0.173 4.173 7 C -0.100 4.100 8 C -0.061 4.061 9 C -0.042 4.042 10 C -0.190 4.190 11 C -0.079 4.079 12 C -0.168 4.168 13 C 0.124 3.876 14 C -0.451 4.451 15 H 0.083 0.917 16 C 0.075 3.925 17 N -0.786 5.786 18 Si 0.907 3.093 19 H -0.270 1.270 20 H -0.259 1.259 21 H -0.275 1.275 22 C -0.201 4.201 23 C -0.082 4.082 24 C -0.046 4.046 25 H 0.090 0.910 26 H 0.052 0.948 27 H 0.052 0.948 28 H 0.148 0.852 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.136 0.864 33 H 0.086 0.914 34 H 0.117 0.883 35 H 0.282 0.718 36 H 0.044 0.956 37 H 0.036 0.964 38 H 0.057 0.943 39 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.268 7.278 0.500 10.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.196 6.196 3 C 0.121 3.879 4 N -0.262 5.262 5 C -0.053 4.053 6 C -0.175 4.175 7 C -0.157 4.157 8 C -0.086 4.086 9 C -0.045 4.045 10 C -0.192 4.192 11 C -0.098 4.098 12 C -0.187 4.187 13 C 0.121 3.879 14 C -0.480 4.480 15 H 0.101 0.899 16 C -0.144 4.144 17 N -0.411 5.411 18 Si 0.731 3.269 19 H -0.195 1.195 20 H -0.183 1.183 21 H -0.200 1.200 22 C -0.203 4.203 23 C -0.139 4.139 24 C -0.064 4.064 25 H 0.109 0.891 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.165 0.835 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.154 0.846 33 H 0.105 0.895 34 H 0.135 0.865 35 H 0.093 0.907 36 H 0.063 0.937 37 H 0.055 0.945 38 H 0.076 0.924 39 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -7.843 7.013 0.435 10.531 hybrid contribution 1.126 -0.348 -0.221 1.199 sum -6.718 6.665 0.215 9.466 Atomic orbital electron populations 1.22757 0.78772 1.02352 1.01610 1.86378 1.21316 1.24199 1.87728 1.20050 0.89063 0.84232 0.94551 1.67131 1.40981 0.98764 1.19310 1.22009 0.91981 0.93311 0.97970 1.20610 0.94726 0.96340 1.05829 1.20585 1.00615 0.92553 1.01957 1.21492 1.00190 0.90120 0.96807 1.19041 0.89628 0.94847 1.01001 1.17722 1.02277 0.94498 1.04725 1.20399 0.94826 0.97328 0.97199 1.20909 1.01503 0.95058 1.01240 1.17542 0.89718 0.92410 0.88184 1.19649 0.96270 0.96461 1.35595 0.89873 1.25964 0.97898 0.97697 0.92810 1.69825 1.12066 1.26922 1.32293 0.86313 0.79471 0.82184 0.78921 1.19494 1.18315 1.19978 1.19415 1.03128 0.96689 1.01030 1.20383 0.98441 0.97857 0.97217 1.20083 0.96966 0.92753 0.96623 0.89125 0.92978 0.92953 0.83506 0.91597 0.91658 0.91849 0.84613 0.89545 0.86506 0.90738 0.93738 0.94478 0.92412 0.89377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.58 10.38 101.05 1.05 1.63 16 2 O -0.29 -5.52 8.84 -18.32 -0.16 -5.68 16 3 C 0.30 5.81 7.42 -16.64 -0.12 5.68 16 4 N -0.54 -9.35 9.21 -12.96 -0.12 -9.47 16 5 C 0.10 1.51 10.84 -17.47 -0.19 1.32 16 6 C -0.17 -2.51 5.89 -104.53 -0.62 -3.13 16 7 C -0.10 -1.06 10.03 36.00 0.36 -0.69 16 8 C -0.06 -1.06 9.35 -38.90 -0.36 -1.42 16 9 C -0.04 -0.85 5.49 -104.58 -0.57 -1.43 16 10 C -0.19 -4.33 5.32 -104.64 -0.56 -4.89 16 11 C -0.08 -1.86 9.47 -39.65 -0.38 -2.23 16 12 C -0.17 -4.30 8.61 -39.28 -0.34 -4.64 16 13 C 0.12 3.23 5.56 -106.79 -0.59 2.64 16 14 C -0.45 -11.53 8.43 -37.88 -0.32 -11.85 16 15 H 0.08 2.03 6.26 -52.49 -0.33 1.70 16 16 C 0.07 1.82 5.15 -17.33 -0.09 1.73 16 17 N -0.79 -19.73 11.00 55.55 0.61 -19.12 16 18 Si 0.91 18.10 29.59 -169.99 -5.03 13.07 16 19 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 20 H -0.26 -5.14 7.11 56.52 0.40 -4.74 16 21 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 22 C -0.20 -4.87 5.90 -104.32 -0.62 -5.49 16 23 C -0.08 -1.72 9.61 36.01 0.35 -1.37 16 24 C -0.05 -1.07 8.36 -39.65 -0.33 -1.40 16 25 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 26 H 0.05 0.70 8.11 -51.93 -0.42 0.28 16 27 H 0.05 0.71 8.11 -51.93 -0.42 0.29 16 28 H 0.15 1.67 8.06 -52.49 -0.42 1.25 16 29 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.06 0.66 8.09 -51.93 -0.42 0.24 16 31 H 0.06 0.56 8.09 -51.93 -0.42 0.14 16 32 H 0.14 2.22 8.06 -52.49 -0.42 1.80 16 33 H 0.09 1.85 8.05 -52.48 -0.42 1.43 16 34 H 0.12 3.07 6.25 -52.49 -0.33 2.74 16 35 H 0.28 6.42 8.30 -40.82 -0.34 6.08 16 36 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.04 0.69 8.08 -51.93 -0.42 0.27 16 38 H 0.06 1.18 6.25 -51.93 -0.32 0.86 16 39 H 0.09 1.94 7.68 -52.49 -0.40 1.54 16 LS Contribution 329.56 15.07 4.97 4.97 Total: -1.00 -28.23 329.56 -8.22 -36.45 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: -5.16 Total: 5.30 kcal Atomic # 6 Polarization: -22.19 SS G_CDS: -3.33 Total: -25.52 kcal Atomic # 7 Polarization: -29.08 SS G_CDS: 0.49 Total: -28.59 kcal Atomic # 8 Polarization: -5.52 SS G_CDS: -0.16 Total: -5.68 kcal Atomic # 14 Polarization: 18.10 SS G_CDS: -5.03 Total: 13.07 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -28.23 -8.22 -36.45 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241363946.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.761 kcal (2) G-P(sol) polarization free energy of solvation -28.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.450 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds