Wall clock time and date at job start Tue Mar 31 2020 05:53:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35550 * 116.99683 * 2 1 4 4 N 1.32144 * 119.79672 * 359.73046 * 3 2 1 5 5 C 1.31961 * 121.80162 * 180.27052 * 4 3 2 6 6 C 1.38312 * 121.16316 * 0.02562 * 5 4 3 7 7 C 1.50704 * 120.27531 * 179.97438 * 6 5 4 8 8 C 1.38417 * 119.44983 * 359.97438 * 6 5 4 9 9 C 1.39872 * 118.35158 * 0.02562 * 8 6 5 10 10 C 1.47842 * 120.59220 * 179.97438 * 9 8 6 11 11 C 1.40039 * 119.88621 * 64.74550 * 10 9 8 12 12 C 1.36192 * 120.11167 * 179.75818 * 11 10 9 13 13 C 1.40977 * 119.88568 * 0.53996 * 12 11 10 14 14 C 1.40986 * 120.10909 * 179.73762 * 13 12 11 15 15 H 1.08002 * 119.99801 * 204.68737 * 14 13 12 16 16 C 1.39986 * 120.00662 * 24.68101 * 14 13 12 17 17 N 1.30811 * 119.99482 * 17.97289 * 16 14 13 18 18 Si 1.86799 * 120.00420 * 197.97625 * 16 14 13 19 19 H 1.48497 * 109.47244 * 59.99934 * 18 16 14 20 20 H 1.48499 * 109.47162 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.46826 * 300.00203 * 18 16 14 22 22 C 1.40932 * 119.77308 * 359.71507 * 13 12 11 23 23 C 1.36231 * 119.88925 * 0.02562 * 22 13 12 24 24 C 1.50697 * 119.94321 * 179.97438 * 23 22 13 25 25 H 1.09005 * 109.46739 * 299.99828 * 1 2 3 26 26 H 1.09000 * 109.47170 * 59.99533 * 1 2 3 27 27 H 1.08995 * 109.46986 * 179.97438 * 1 2 3 28 28 H 1.07999 * 119.41832 * 180.02562 * 5 4 3 29 29 H 1.08998 * 109.47224 * 270.01948 * 7 6 5 30 30 H 1.08997 * 109.46878 * 30.02052 * 7 6 5 31 31 H 1.09001 * 109.46848 * 150.01861 * 7 6 5 32 32 H 1.08001 * 120.82491 * 180.02562 * 8 6 5 33 33 H 1.07993 * 119.93750 * 0.02581 * 11 10 9 34 34 H 1.08004 * 120.05468 * 180.25325 * 12 11 10 35 35 H 0.97005 * 119.99880 * 179.97438 * 17 16 14 36 36 H 1.07999 * 120.05447 * 180.02562 * 22 13 12 37 37 H 1.08994 * 109.47410 * 270.01870 * 24 23 22 38 38 H 1.09004 * 109.47125 * 30.02483 * 24 23 22 39 39 H 1.09004 * 109.46924 * 150.02096 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0444 1.2078 0.0000 4 7 1.3207 2.3134 -0.0054 5 6 1.8782 3.5095 -0.0109 6 6 3.2533 3.6581 -0.0118 7 6 3.8688 5.0338 -0.0187 8 6 4.0595 2.5330 -0.0063 9 6 3.4457 1.2761 -0.0005 10 6 4.2591 0.0416 0.0049 11 6 5.0758 -0.2511 1.1043 12 6 5.8232 -1.3895 1.1163 13 6 5.7825 -2.2682 0.0146 14 6 6.5586 -3.4452 0.0196 15 1 6.8519 -3.9027 -0.9137 16 6 6.9493 -4.0210 1.2344 17 7 6.3286 -3.6994 2.3400 18 14 8.3569 -5.2483 1.2765 19 1 9.5941 -4.6000 0.7725 20 1 8.5714 -5.7077 2.6722 21 1 8.0235 -6.4133 0.4180 22 6 4.9631 -1.9662 -1.0916 23 6 4.2152 -0.8276 -1.0916 24 6 3.3390 -0.5032 -2.2739 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 1.2497 4.3877 -0.0148 29 1 4.0168 5.3604 -1.0480 30 1 3.2050 5.7313 0.4920 31 1 4.8298 5.0044 0.4949 32 1 5.1357 2.6233 -0.0065 33 1 5.1095 0.4249 1.9457 34 1 6.4496 -1.6164 1.9664 35 1 6.5990 -4.0986 3.1817 36 1 4.9282 -2.6364 -1.9378 37 1 3.9055 0.0855 -2.9953 38 1 3.0043 -1.4286 -2.7429 39 1 2.4732 0.0680 -1.9387 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241366377.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:12 Heat of formation + Delta-G solvation = 2.370818 kcal Electronic energy + Delta-G solvation = -21669.078467 eV Core-core repulsion = 18541.104321 eV Total energy + Delta-G solvation = -3127.974146 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.31735 -37.68963 -37.55691 -34.21113 -32.89173 -31.99421 -31.19688 -29.11247 -27.56299 -26.00166 -25.79523 -25.35100 -22.78349 -21.58640 -20.35266 -19.70250 -17.94539 -16.93842 -16.70636 -15.74387 -15.38825 -15.00535 -14.30104 -13.91281 -13.85192 -13.73975 -13.55200 -12.98416 -12.68597 -12.59642 -12.42800 -12.34892 -12.00005 -11.91566 -11.59071 -11.51265 -11.35419 -11.06936 -10.85827 -10.69980 -10.60572 -10.39068 -9.83004 -9.51745 -9.24596 -9.16167 -9.05610 -7.90843 -7.41649 -7.10249 -6.80937 -4.36988 1.49239 1.66208 2.73454 3.03851 3.06234 3.11787 3.17335 3.54912 3.88862 4.12663 4.54509 4.66933 5.09599 5.15894 5.31795 5.48259 5.55324 5.61575 5.65466 5.67879 5.76942 5.86140 5.95180 6.03132 6.09873 6.26317 6.35580 6.39042 6.49163 6.60411 6.68877 6.86552 6.97731 7.02655 7.24996 7.36948 7.63434 7.69300 7.91718 8.04369 8.12192 8.23995 8.27453 8.60627 8.84851 8.96322 10.11858 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.023368 B = 0.004479 C = 0.004164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.918860 B = 6249.597936 C = 6722.002794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.286 6.286 3 C 0.308 3.692 4 N -0.542 5.542 5 C 0.108 3.892 6 C -0.177 4.177 7 C -0.099 4.099 8 C -0.055 4.055 9 C -0.042 4.042 10 C -0.191 4.191 11 C -0.074 4.074 12 C -0.173 4.173 13 C 0.121 3.879 14 C -0.457 4.457 15 H 0.079 0.921 16 C 0.076 3.924 17 N -0.785 5.785 18 Si 0.909 3.091 19 H -0.263 1.263 20 H -0.278 1.278 21 H -0.265 1.265 22 C -0.228 4.228 23 C -0.025 4.025 24 C -0.107 4.107 25 H 0.052 0.948 26 H 0.052 0.948 27 H 0.091 0.909 28 H 0.148 0.852 29 H 0.065 0.935 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.136 0.864 33 H 0.086 0.914 34 H 0.117 0.883 35 H 0.282 0.718 36 H 0.092 0.908 37 H 0.050 0.950 38 H 0.052 0.948 39 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.262 10.154 -2.688 11.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.192 6.192 3 C 0.129 3.871 4 N -0.265 5.265 5 C -0.047 4.047 6 C -0.180 4.180 7 C -0.157 4.157 8 C -0.080 4.080 9 C -0.045 4.045 10 C -0.193 4.193 11 C -0.093 4.093 12 C -0.192 4.192 13 C 0.119 3.881 14 C -0.485 4.485 15 H 0.097 0.903 16 C -0.143 4.143 17 N -0.409 5.409 18 Si 0.733 3.267 19 H -0.187 1.187 20 H -0.203 1.203 21 H -0.189 1.189 22 C -0.247 4.247 23 C -0.025 4.025 24 C -0.164 4.164 25 H 0.071 0.929 26 H 0.070 0.930 27 H 0.109 0.891 28 H 0.165 0.835 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.153 0.847 33 H 0.104 0.896 34 H 0.135 0.865 35 H 0.093 0.907 36 H 0.111 0.889 37 H 0.069 0.931 38 H 0.071 0.929 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -6.096 9.726 -2.424 11.731 hybrid contribution 1.133 -0.451 0.212 1.238 sum -4.962 9.275 -2.212 10.749 Atomic orbital electron populations 1.22774 0.78771 1.02462 1.01593 1.86434 1.21297 1.24104 1.87374 1.20122 0.89179 0.84207 0.93599 1.67161 1.40995 0.98769 1.19562 1.22042 0.91993 0.93351 0.97291 1.20617 0.94741 0.96355 1.06241 1.20579 1.00605 0.92548 1.01925 1.21527 1.00154 0.90129 0.96193 1.18969 0.89687 0.94823 1.01042 1.17546 1.07417 0.96348 0.98016 1.20365 0.96546 0.96985 0.95375 1.20930 1.03258 0.94085 1.00907 1.17639 0.88411 0.91515 0.90579 1.19568 1.28065 1.07699 0.93210 0.90330 1.25961 0.96131 0.97091 0.95084 1.69831 1.34230 1.36860 1.00002 0.86361 0.81710 0.80518 0.78136 1.18727 1.20276 1.18927 1.20500 1.03950 0.99017 1.01234 1.18983 0.95993 0.93964 0.93583 1.20755 0.98549 1.00665 0.96402 0.92913 0.92956 0.89061 0.83464 0.91622 0.91849 0.91686 0.84657 0.89620 0.86502 0.90665 0.88950 0.93141 0.92870 0.92592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.58 10.38 101.05 1.05 1.63 16 2 O -0.29 -5.54 8.42 -18.35 -0.15 -5.70 16 3 C 0.31 5.91 6.12 -16.64 -0.10 5.81 16 4 N -0.54 -9.29 9.21 -12.96 -0.12 -9.41 16 5 C 0.11 1.57 10.84 -17.47 -0.19 1.38 16 6 C -0.18 -2.50 5.89 -104.53 -0.62 -3.11 16 7 C -0.10 -1.01 10.03 36.01 0.36 -0.64 16 8 C -0.06 -0.92 9.56 -38.90 -0.37 -1.30 16 9 C -0.04 -0.84 4.62 -104.58 -0.48 -1.32 16 10 C -0.19 -4.34 5.00 -104.64 -0.52 -4.86 16 11 C -0.07 -1.76 9.67 -39.64 -0.38 -2.15 16 12 C -0.17 -4.48 8.63 -39.28 -0.34 -4.82 16 13 C 0.12 3.22 5.57 -106.80 -0.60 2.63 16 14 C -0.46 -11.99 9.03 -37.89 -0.34 -12.33 16 15 H 0.08 1.97 7.91 -52.49 -0.42 1.56 16 16 C 0.08 1.89 5.13 -17.33 -0.09 1.80 16 17 N -0.78 -20.12 10.96 55.55 0.61 -19.51 16 18 Si 0.91 18.35 29.60 -169.99 -5.03 13.32 16 19 H -0.26 -5.26 7.11 56.52 0.40 -4.86 16 20 H -0.28 -5.46 7.11 56.52 0.40 -5.06 16 21 H -0.26 -5.29 7.11 56.52 0.40 -4.88 16 22 C -0.23 -5.64 9.36 -39.28 -0.37 -6.01 16 23 C -0.03 -0.58 5.66 -104.69 -0.59 -1.17 16 24 C -0.11 -2.08 9.43 36.00 0.34 -1.74 16 25 H 0.05 0.73 8.11 -51.93 -0.42 0.31 16 26 H 0.05 0.71 8.10 -51.93 -0.42 0.29 16 27 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 28 H 0.15 1.63 8.06 -52.49 -0.42 1.21 16 29 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.53 8.09 -51.93 -0.42 0.11 16 31 H 0.06 0.63 8.09 -51.93 -0.42 0.21 16 32 H 0.14 2.11 8.06 -52.49 -0.42 1.69 16 33 H 0.09 1.88 8.06 -52.49 -0.42 1.46 16 34 H 0.12 3.11 6.16 -52.48 -0.32 2.79 16 35 H 0.28 6.58 8.30 -40.82 -0.34 6.24 16 36 H 0.09 2.17 8.06 -52.49 -0.42 1.75 16 37 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 38 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 39 H 0.06 1.08 4.65 -51.93 -0.24 0.84 16 LS Contribution 328.56 15.07 4.95 4.95 Total: -1.00 -28.82 328.56 -8.16 -36.98 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: -5.18 Total: 5.57 kcal Atomic # 6 Polarization: -22.96 SS G_CDS: -3.24 Total: -26.21 kcal Atomic # 7 Polarization: -29.41 SS G_CDS: 0.49 Total: -28.92 kcal Atomic # 8 Polarization: -5.54 SS G_CDS: -0.15 Total: -5.70 kcal Atomic # 14 Polarization: 18.35 SS G_CDS: -5.03 Total: 13.32 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -28.82 -8.16 -36.98 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241366377.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.350 kcal (2) G-P(sol) polarization free energy of solvation -28.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.979 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds