Wall clock time and date at job start Tue Mar 31 2020 06:03:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50694 * 109.47051 * 2 1 4 4 C 1.38312 * 120.36190 * 270.02201 * 3 2 1 5 5 N 1.31886 * 121.03643 * 179.97438 * 4 3 2 6 6 C 1.31741 * 121.85460 * 0.04678 * 5 4 3 7 7 C 1.39325 * 120.59303 * 359.95098 * 6 5 4 8 8 C 1.48370 * 120.53916 * 180.30031 * 7 6 5 9 9 C 1.39922 * 119.92119 * 179.72114 * 8 7 6 10 10 C 1.38038 * 120.47219 * 179.97438 * 9 8 7 11 11 C 1.38509 * 120.30930 * 359.97438 * 10 9 8 12 12 O 1.35599 * 120.08693 * 180.02562 * 11 10 9 13 13 C 1.42899 * 116.99595 * 0.02562 * 12 11 10 14 14 C 1.41384 * 119.83268 * 0.02562 * 11 10 9 15 15 C 1.41178 * 120.23433 * 179.97438 * 14 11 10 16 16 H 1.08005 * 119.99716 * 24.60288 * 15 14 11 17 17 C 1.39905 * 120.00327 * 204.60303 * 15 14 11 18 18 N 1.30879 * 119.99737 * 17.61595 * 17 15 14 19 19 Si 1.86796 * 120.00119 * 197.61467 * 17 15 14 20 20 H 1.48497 * 109.47175 * 60.00052 * 19 17 15 21 21 H 1.48504 * 109.47041 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.47346 * 299.99808 * 19 17 15 23 23 C 1.38622 * 119.91866 * 359.44392 * 8 7 6 24 24 C 1.38416 * 120.35626 * 89.99537 * 3 2 1 25 25 H 1.08997 * 109.47259 * 299.99927 * 1 2 3 26 26 H 1.08999 * 109.46825 * 60.00827 * 1 2 3 27 27 H 1.09002 * 109.46680 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47259 * 240.00073 * 2 1 3 29 29 H 1.09007 * 109.46891 * 119.99813 * 2 1 3 30 30 H 1.08003 * 119.48406 * 359.97249 * 4 3 2 31 31 H 1.08003 * 119.70865 * 179.97438 * 6 5 4 32 32 H 1.07995 * 119.76493 * 359.95265 * 9 8 7 33 33 H 1.07996 * 119.84303 * 179.97438 * 10 9 8 34 34 H 1.08999 * 109.47422 * 299.99780 * 13 12 11 35 35 H 1.09001 * 109.47224 * 60.00553 * 13 12 11 36 36 H 1.09003 * 109.47082 * 179.97438 * 13 12 11 37 37 H 0.97000 * 120.00088 * 180.02562 * 18 17 15 38 38 H 1.07995 * 120.15641 * 0.02562 * 23 8 7 39 39 H 1.08002 * 120.84492 * 0.02562 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2649 2.0800 -1.1934 5 7 2.7040 3.3236 -1.2090 6 6 2.9409 3.9912 -0.0982 7 6 2.7313 3.3972 1.1445 8 6 2.9922 4.1524 2.3947 9 6 2.7718 3.5452 3.6359 10 6 3.0112 4.2370 4.8061 11 6 3.4736 5.5420 4.7645 12 8 3.7078 6.2173 5.9168 13 6 3.4566 5.5211 7.1391 14 6 3.7008 6.1683 3.5174 15 6 4.1715 7.4983 3.4651 16 1 4.7257 7.9080 4.2966 17 6 3.9200 8.2855 2.3362 18 7 2.9815 7.9386 1.4925 19 14 4.9236 9.8315 2.0332 20 1 6.3592 9.4731 1.9080 21 1 4.4650 10.4815 0.7792 22 1 4.7448 10.7687 3.1711 23 6 3.4592 5.4560 2.3303 24 6 2.2654 2.0803 1.1944 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8901 30 1 2.0842 1.5685 -2.1273 31 1 3.3004 5.0082 -0.1514 32 1 2.4114 2.5280 3.6786 33 1 2.8372 3.7586 5.7585 34 1 2.4080 5.2262 7.1805 35 1 4.0862 4.6326 7.1873 36 1 3.6844 6.1734 7.9822 37 1 2.8073 8.4842 0.7096 38 1 3.6332 5.9233 1.3723 39 1 2.0923 1.5897 2.1408 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241374156.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:00 Heat of formation + Delta-G solvation = 0.726960 kcal Electronic energy + Delta-G solvation = -21291.592511 eV Core-core repulsion = 18163.547083 eV Total energy + Delta-G solvation = -3128.045429 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.87374 -38.64734 -36.30812 -34.49541 -33.90880 -31.98888 -29.96046 -29.66266 -27.86149 -26.53935 -25.38135 -23.98923 -23.18690 -21.62151 -20.69438 -19.57925 -17.56370 -16.78021 -16.34352 -16.08396 -15.32075 -14.84827 -14.72602 -14.50245 -14.03142 -13.74568 -13.49347 -13.28837 -12.98264 -12.57483 -12.43299 -12.35407 -11.95203 -11.78809 -11.62936 -11.35212 -11.21573 -11.10443 -10.95107 -10.75778 -10.50069 -10.37373 -10.08146 -9.52917 -9.29443 -9.11532 -8.90042 -8.54048 -7.60007 -6.90428 -6.66615 -4.31302 1.35858 1.69064 2.71964 2.94764 3.08807 3.11368 3.20122 3.94119 4.25011 4.42215 4.65853 4.79195 4.96068 5.00427 5.32090 5.38282 5.49307 5.50940 5.53129 5.56550 5.69243 5.76930 5.81637 5.84185 5.94214 6.02060 6.11831 6.15550 6.21275 6.27739 6.58288 6.66111 6.74389 7.02323 7.14220 7.23615 7.29461 7.55756 7.61275 7.87717 8.07902 8.29046 8.45662 8.61432 8.77005 8.96574 10.16383 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.015471 B = 0.005278 C = 0.004044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1809.422724 B = 5303.436488 C = 6922.897865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.076 4.076 3 C -0.137 4.137 4 C 0.070 3.930 5 N -0.481 5.481 6 C 0.093 3.907 7 C -0.048 4.048 8 C -0.072 4.072 9 C -0.191 4.191 10 C -0.179 4.179 11 C 0.023 3.977 12 O -0.310 6.310 13 C 0.034 3.966 14 C 0.095 3.905 15 C -0.445 4.445 16 H 0.084 0.916 17 C 0.074 3.926 18 N -0.796 5.796 19 Si 0.910 3.090 20 H -0.263 1.263 21 H -0.278 1.278 22 H -0.265 1.265 23 C -0.124 4.124 24 C -0.085 4.085 25 H 0.056 0.944 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.144 0.856 31 H 0.162 0.838 32 H 0.094 0.906 33 H 0.099 0.901 34 H 0.041 0.959 35 H 0.040 0.960 36 H 0.082 0.918 37 H 0.283 0.717 38 H 0.132 0.868 39 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.005 -9.690 -0.224 9.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.114 4.114 3 C -0.139 4.139 4 C -0.086 4.086 5 N -0.189 5.189 6 C -0.064 4.064 7 C -0.049 4.049 8 C -0.073 4.073 9 C -0.211 4.211 10 C -0.198 4.198 11 C -0.021 4.021 12 O -0.225 6.225 13 C -0.062 4.062 14 C 0.092 3.908 15 C -0.474 4.474 16 H 0.102 0.898 17 C -0.143 4.143 18 N -0.422 5.422 19 Si 0.734 3.266 20 H -0.188 1.188 21 H -0.203 1.203 22 H -0.190 1.190 23 C -0.143 4.143 24 C -0.111 4.111 25 H 0.075 0.925 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.089 0.911 29 H 0.088 0.912 30 H 0.161 0.839 31 H 0.179 0.821 32 H 0.112 0.888 33 H 0.117 0.883 34 H 0.059 0.941 35 H 0.059 0.941 36 H 0.101 0.899 37 H 0.094 0.906 38 H 0.150 0.850 39 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -1.918 -8.984 -1.237 9.270 hybrid contribution 0.014 0.014 0.889 0.889 sum -1.905 -8.971 -0.348 9.177 Atomic orbital electron populations 1.21756 0.94878 1.01391 1.02386 1.20415 0.96018 0.92352 1.02635 1.20729 1.01561 0.97351 0.94266 1.22444 0.98138 0.91227 0.96831 1.67599 1.11309 1.08215 1.31748 1.23052 0.96493 1.00022 0.86808 1.20064 0.96369 0.93524 0.94991 1.18271 1.04443 0.94517 0.90039 1.20120 1.10906 0.98703 0.91329 1.20537 1.07322 0.94509 0.97433 1.19357 1.05251 0.91754 0.85766 1.85964 1.83753 1.40748 1.11993 1.22757 0.99704 0.97340 0.86415 1.16958 0.92807 0.93540 0.87491 1.19394 1.30266 0.95981 1.01743 0.89829 1.25895 0.93763 0.99652 0.95029 1.69802 1.23535 1.37836 1.10992 0.86329 0.80985 0.80868 0.78392 1.18779 1.20299 1.18986 1.21241 1.03039 0.91360 0.98690 1.21515 0.97685 0.94087 0.97773 0.92496 0.92567 0.92572 0.91084 0.91158 0.83882 0.82134 0.88809 0.88285 0.94059 0.94147 0.89928 0.90620 0.85010 0.85206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 9.89 37.16 0.37 -1.11 16 2 C -0.08 -0.83 6.09 -27.88 -0.17 -1.00 16 3 C -0.14 -2.03 5.15 -104.53 -0.54 -2.57 16 4 C 0.07 1.11 10.85 -17.50 -0.19 0.92 16 5 N -0.48 -9.04 10.35 -12.97 -0.13 -9.18 16 6 C 0.09 1.88 10.59 -17.19 -0.18 1.70 16 7 C -0.05 -0.96 5.89 -104.75 -0.62 -1.58 16 8 C -0.07 -1.62 5.87 -104.95 -0.62 -2.23 16 9 C -0.19 -4.08 9.44 -39.02 -0.37 -4.45 16 10 C -0.18 -3.88 9.01 -39.55 -0.36 -4.24 16 11 C 0.02 0.57 6.72 -38.29 -0.26 0.31 16 12 O -0.31 -7.01 9.76 -18.49 -0.18 -7.19 16 13 C 0.03 0.56 9.81 101.05 0.99 1.55 16 14 C 0.09 2.48 5.58 -106.72 -0.60 1.89 16 15 C -0.44 -11.72 8.71 -37.84 -0.33 -12.05 16 16 H 0.08 2.19 7.64 -52.48 -0.40 1.79 16 17 C 0.07 1.83 5.14 -17.33 -0.09 1.74 16 18 N -0.80 -20.05 10.96 55.55 0.61 -19.45 16 19 Si 0.91 18.64 29.59 -169.99 -5.03 13.61 16 20 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 21 H -0.28 -5.54 7.11 56.52 0.40 -5.14 16 22 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 23 C -0.12 -3.09 8.07 -38.58 -0.31 -3.40 16 24 C -0.09 -1.45 9.21 -38.94 -0.36 -1.81 16 25 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.07 0.67 8.09 -51.93 -0.42 0.25 16 29 H 0.07 0.72 8.09 -51.92 -0.42 0.30 16 30 H 0.14 1.81 8.06 -52.48 -0.42 1.39 16 31 H 0.16 3.33 6.21 -52.48 -0.33 3.00 16 32 H 0.09 1.74 6.24 -52.49 -0.33 1.41 16 33 H 0.10 1.85 6.27 -52.49 -0.33 1.52 16 34 H 0.04 0.64 7.65 -51.93 -0.40 0.24 16 35 H 0.04 0.61 7.66 -51.93 -0.40 0.21 16 36 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.28 6.55 8.30 -40.82 -0.34 6.21 16 38 H 0.13 3.32 4.32 -52.49 -0.23 3.10 16 39 H 0.13 2.01 6.30 -52.49 -0.33 1.68 16 LS Contribution 325.41 15.07 4.90 4.90 Total: -1.00 -28.29 325.41 -8.28 -36.56 By element: Atomic # 1 Polarization: 11.90 SS G_CDS: -4.82 Total: 7.08 kcal Atomic # 6 Polarization: -22.72 SS G_CDS: -3.62 Total: -26.34 kcal Atomic # 7 Polarization: -29.10 SS G_CDS: 0.47 Total: -28.62 kcal Atomic # 8 Polarization: -7.01 SS G_CDS: -0.18 Total: -7.19 kcal Atomic # 14 Polarization: 18.64 SS G_CDS: -5.03 Total: 13.61 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -28.29 -8.28 -36.56 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241374156.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.291 kcal (2) G-P(sol) polarization free energy of solvation -28.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.564 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds