Wall clock time and date at job start Tue Mar 31 2020 06:03:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50696 * 109.46768 * 2 1 4 4 C 1.38369 * 120.35084 * 270.01705 * 3 2 1 5 5 N 1.31914 * 121.08305 * 179.97438 * 4 3 2 6 6 C 1.31702 * 121.87108 * 359.73612 * 5 4 3 7 7 C 1.39535 * 120.56611 * 0.53029 * 6 5 4 8 8 C 1.48032 * 120.56000 * 179.75242 * 7 6 5 9 9 C 1.40080 * 119.83546 * 179.72235 * 8 7 6 10 10 C 1.36120 * 120.39329 * 180.02562 * 9 8 7 11 11 C 1.40909 * 120.05652 * 0.02562 * 10 9 8 12 12 C 1.40838 * 120.16047 * 179.97438 * 11 10 9 13 13 H 1.08002 * 120.00566 * 208.90236 * 12 11 10 14 14 C 1.40008 * 119.99897 * 28.89639 * 12 11 10 15 15 N 1.30828 * 120.00358 * 197.78422 * 14 12 11 16 16 Si 1.86801 * 119.99716 * 17.79051 * 14 12 11 17 17 H 1.48503 * 109.46864 * 269.99223 * 16 14 12 18 18 H 1.48491 * 109.47221 * 29.99509 * 16 14 12 19 19 H 1.48502 * 109.47045 * 149.99561 * 16 14 12 20 20 C 1.41497 * 119.68352 * 0.23695 * 11 10 9 21 21 O 1.35667 * 120.19937 * 179.74333 * 20 11 10 22 22 C 1.42904 * 117.00223 * 180.02562 * 21 20 11 23 23 C 1.37986 * 119.60269 * 359.48708 * 20 11 10 24 24 C 1.38349 * 120.34636 * 90.00323 * 3 2 1 25 25 H 1.08997 * 109.47257 * 299.99560 * 1 2 3 26 26 H 1.08997 * 109.47348 * 59.99782 * 1 2 3 27 27 H 1.09003 * 109.46958 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47035 * 239.99988 * 2 1 3 29 29 H 1.09005 * 109.47187 * 119.99962 * 2 1 3 30 30 H 1.08004 * 119.45545 * 0.02562 * 4 3 2 31 31 H 1.08001 * 119.71775 * 180.26543 * 6 5 4 32 32 H 1.07996 * 119.80740 * 0.04557 * 9 8 7 33 33 H 1.07998 * 119.96673 * 180.02562 * 10 9 8 34 34 H 0.97002 * 119.99842 * 355.44044 * 15 14 12 35 35 H 1.08998 * 109.46708 * 299.99842 * 22 21 20 36 36 H 1.09001 * 109.46791 * 60.00025 * 22 21 20 37 37 H 1.09002 * 109.46793 * 179.97438 * 22 21 20 38 38 H 1.08007 * 120.03001 * 180.22403 * 23 20 11 39 39 H 1.07998 * 120.85309 * 359.97438 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 6 2.2649 2.0801 -1.1941 5 7 2.7040 3.3239 -1.2109 6 6 2.9355 3.9948 -0.1014 7 6 2.7310 3.3991 1.1437 8 6 2.9964 4.1515 2.3907 9 6 2.7804 3.5405 3.6326 10 6 3.0203 4.2220 4.7863 11 6 3.4882 5.5502 4.7372 12 6 3.7365 6.2575 5.9295 13 1 3.6360 7.3326 5.9507 14 6 4.1137 5.5668 7.0875 15 7 4.0089 6.1440 8.2569 16 14 4.7666 3.8211 6.9628 17 1 3.6368 2.8621 7.0582 18 1 5.4584 3.6431 5.6610 19 1 5.7236 3.5702 8.0703 20 6 3.7020 6.1719 3.4842 21 8 4.1474 7.4520 3.4248 22 6 4.3392 8.0125 2.1243 23 6 3.4600 5.4666 2.3232 24 6 2.2652 2.0798 1.1939 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 2.0832 1.5682 -2.1276 31 1 3.2907 5.0133 -0.1558 32 1 2.4218 2.5228 3.6750 33 1 2.8518 3.7441 5.7400 34 1 3.7331 7.0721 8.3167 35 1 5.0744 7.4210 1.5787 36 1 3.3933 8.0060 1.5828 37 1 4.6959 9.0381 2.2197 38 1 3.6244 5.9333 1.3631 39 1 2.0915 1.5894 2.1403 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241374243.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:05 Heat of formation + Delta-G solvation = -3.025529 kcal Electronic energy + Delta-G solvation = -21302.226125 eV Core-core repulsion = 18174.017976 eV Total energy + Delta-G solvation = -3128.208149 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.97422 -38.86857 -36.51271 -34.66157 -34.18493 -32.29892 -30.19430 -29.30076 -28.92999 -26.78025 -25.16694 -24.14315 -22.88221 -21.81587 -20.57876 -20.11791 -18.40663 -17.14204 -16.59072 -16.18827 -15.05658 -14.90689 -14.80305 -14.63059 -14.29350 -13.82515 -13.76608 -13.37790 -13.32794 -12.93325 -12.64756 -12.52124 -12.34028 -11.89446 -11.75785 -11.59937 -11.30900 -11.04189 -10.83312 -10.62237 -10.57621 -10.43443 -9.99904 -9.61936 -9.44650 -9.15832 -9.00588 -8.69299 -7.69734 -7.59665 -7.17719 -4.57915 1.20282 1.59690 2.54942 2.63142 3.09266 3.26125 3.44804 3.86838 4.09162 4.23329 4.51384 4.69331 4.90288 4.93370 5.19553 5.26374 5.32452 5.35657 5.42023 5.47868 5.58975 5.65872 5.70715 5.77943 5.80233 5.89366 5.93577 6.07418 6.13252 6.17513 6.34756 6.52728 6.60815 6.63370 6.87627 7.04253 7.23437 7.29869 7.39052 7.60807 7.70822 7.97728 8.22170 8.35327 8.37098 8.68602 9.77609 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.018043 B = 0.005036 C = 0.004110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1551.508001 B = 5558.871881 C = 6811.259389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.078 4.078 3 C -0.122 4.122 4 C 0.053 3.947 5 N -0.476 5.476 6 C 0.064 3.936 7 C -0.022 4.022 8 C -0.179 4.179 9 C -0.062 4.062 10 C -0.238 4.238 11 C 0.093 3.907 12 C -0.471 4.471 13 H 0.086 0.914 14 C 0.038 3.962 15 N -0.797 5.797 16 Si 1.074 2.926 17 H -0.273 1.273 18 H -0.260 1.260 19 H -0.287 1.287 20 C 0.022 3.978 21 O -0.310 6.310 22 C 0.032 3.968 23 C -0.143 4.143 24 C -0.104 4.104 25 H 0.056 0.944 26 H 0.055 0.945 27 H 0.056 0.944 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.143 0.857 31 H 0.148 0.852 32 H 0.100 0.900 33 H 0.115 0.885 34 H 0.290 0.710 35 H 0.044 0.956 36 H 0.042 0.958 37 H 0.085 0.915 38 H 0.107 0.893 39 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.502 -7.077 -10.661 13.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.116 4.116 3 C -0.124 4.124 4 C -0.104 4.104 5 N -0.183 5.183 6 C -0.094 4.094 7 C -0.024 4.024 8 C -0.181 4.181 9 C -0.081 4.081 10 C -0.257 4.257 11 C 0.089 3.911 12 C -0.498 4.498 13 H 0.104 0.896 14 C -0.183 4.183 15 N -0.418 5.418 16 Si 0.899 3.101 17 H -0.200 1.200 18 H -0.184 1.184 19 H -0.214 1.214 20 C -0.023 4.023 21 O -0.225 6.225 22 C -0.064 4.064 23 C -0.163 4.163 24 C -0.130 4.130 25 H 0.075 0.925 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.089 0.911 29 H 0.090 0.910 30 H 0.160 0.840 31 H 0.165 0.835 32 H 0.118 0.882 33 H 0.132 0.868 34 H 0.102 0.898 35 H 0.062 0.938 36 H 0.061 0.939 37 H 0.103 0.897 38 H 0.124 0.876 39 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -1.803 -7.700 -10.300 12.986 hybrid contribution -0.789 1.132 -0.322 1.417 sum -2.593 -6.568 -10.622 12.755 Atomic orbital electron populations 1.21747 0.94811 1.01485 1.02328 1.20440 0.96071 0.92385 1.02734 1.20716 1.00342 0.97151 0.94214 1.22325 0.99979 0.91295 0.96797 1.67461 1.10779 1.08355 1.31705 1.22705 0.99875 0.99718 0.87117 1.19866 0.94848 0.93337 0.94368 1.17587 1.15632 0.94486 0.90442 1.20360 0.98090 0.97736 0.91882 1.20554 1.11399 0.96331 0.97419 1.17276 0.91529 0.91591 0.90731 1.20722 1.37617 0.97171 0.94279 0.89593 1.27492 0.92434 1.07459 0.90939 1.70529 1.30572 1.14843 1.25859 0.83576 0.77265 0.72099 0.77130 1.20015 1.18438 1.21422 1.18988 1.04929 0.84607 0.93727 1.85994 1.82340 1.26070 1.28063 1.22812 0.99987 0.98318 0.85308 1.20718 1.04548 0.95077 0.95915 1.21478 0.99459 0.94220 0.97803 0.92473 0.92621 0.92500 0.91066 0.91037 0.84012 0.83523 0.88212 0.86769 0.89805 0.93787 0.93915 0.89651 0.87562 0.85253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 9.89 37.16 0.37 -1.03 16 2 C -0.08 -0.82 6.08 -27.89 -0.17 -0.99 16 3 C -0.12 -1.71 5.15 -104.53 -0.54 -2.24 16 4 C 0.05 0.77 10.85 -17.47 -0.19 0.58 16 5 N -0.48 -8.06 10.35 -12.90 -0.13 -8.19 16 6 C 0.06 1.11 10.60 -17.12 -0.18 0.93 16 7 C -0.02 -0.40 5.90 -104.74 -0.62 -1.02 16 8 C -0.18 -3.66 5.89 -104.68 -0.62 -4.28 16 9 C -0.06 -1.29 9.36 -39.65 -0.37 -1.67 16 10 C -0.24 -5.45 7.20 -39.33 -0.28 -5.74 16 11 C 0.09 2.29 5.15 -106.66 -0.55 1.74 16 12 C -0.47 -12.27 9.05 -37.94 -0.34 -12.61 16 13 H 0.09 2.36 7.87 -52.49 -0.41 1.94 16 14 C 0.04 0.96 5.41 -17.32 -0.09 0.86 16 15 N -0.80 -20.41 13.66 55.55 0.76 -19.65 16 16 Si 1.07 23.18 24.90 -169.99 -4.23 18.95 16 17 H -0.27 -5.51 6.43 56.52 0.36 -5.15 16 18 H -0.26 -5.63 7.03 56.52 0.40 -5.24 16 19 H -0.29 -6.02 7.11 56.52 0.40 -5.62 16 20 C 0.02 0.50 6.71 -38.43 -0.26 0.24 16 21 O -0.31 -6.81 9.82 -18.70 -0.18 -7.00 16 22 C 0.03 0.51 9.81 101.05 0.99 1.50 16 23 C -0.14 -2.97 8.41 -39.16 -0.33 -3.30 16 24 C -0.10 -1.67 9.21 -38.88 -0.36 -2.03 16 25 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.07 0.64 8.09 -51.93 -0.42 0.22 16 29 H 0.07 0.71 8.09 -51.93 -0.42 0.29 16 30 H 0.14 1.68 8.06 -52.48 -0.42 1.25 16 31 H 0.15 2.38 6.20 -52.49 -0.33 2.05 16 32 H 0.10 1.78 6.23 -52.49 -0.33 1.46 16 33 H 0.11 2.55 4.39 -52.49 -0.23 2.32 16 34 H 0.29 7.23 8.73 -40.82 -0.36 6.87 16 35 H 0.04 0.65 7.65 -51.93 -0.40 0.25 16 36 H 0.04 0.63 7.67 -51.93 -0.40 0.23 16 37 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.11 1.92 4.44 -52.48 -0.23 1.68 16 39 H 0.13 1.91 6.30 -52.49 -0.33 1.58 16 LS Contribution 320.26 15.07 4.83 4.83 Total: -1.00 -27.64 320.26 -7.31 -34.95 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: -4.80 Total: 5.15 kcal Atomic # 6 Polarization: -25.50 SS G_CDS: -3.54 Total: -29.04 kcal Atomic # 7 Polarization: -28.47 SS G_CDS: 0.63 Total: -27.84 kcal Atomic # 8 Polarization: -6.81 SS G_CDS: -0.18 Total: -7.00 kcal Atomic # 14 Polarization: 23.18 SS G_CDS: -4.23 Total: 18.95 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -27.64 -7.31 -34.95 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241374243.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.926 kcal (2) G-P(sol) polarization free energy of solvation -27.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds