Wall clock time and date at job start Tue Mar 31 2020 06:03:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50703 * 109.47141 * 2 1 4 4 C 1.38385 * 120.33889 * 270.01560 * 3 2 1 5 5 N 1.31938 * 121.09731 * 179.97438 * 4 3 2 6 6 C 1.31681 * 121.87826 * 359.97438 * 5 4 3 7 7 C 1.39638 * 120.55359 * 0.02562 * 6 5 4 8 8 C 1.47846 * 120.56318 * 180.02562 * 7 6 5 9 9 C 1.39161 * 120.21727 * 129.73082 * 8 7 6 10 10 C 1.37949 * 120.16695 * 179.74265 * 9 8 7 11 11 C 1.39467 * 120.62038 * 0.50558 * 10 9 8 12 12 O 1.35867 * 119.78770 * 179.74810 * 11 10 9 13 13 C 1.42895 * 116.99964 * 0.02562 * 12 11 10 14 14 C 1.37938 * 120.43103 * 359.76949 * 11 10 9 15 15 C 1.40646 * 119.81915 * 359.97438 * 14 11 10 16 16 C 1.40898 * 120.30047 * 179.97438 * 15 14 11 17 17 H 1.07995 * 119.99831 * 153.39892 * 16 15 14 18 18 C 1.40051 * 119.99826 * 333.40052 * 16 15 14 19 19 N 1.30785 * 120.00047 * 344.33127 * 18 16 15 20 20 Si 1.86798 * 119.99764 * 164.32840 * 18 16 15 21 21 H 1.48504 * 109.47174 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.47046 * 120.00186 * 20 18 16 23 23 H 1.48502 * 109.47402 * 240.00224 * 20 18 16 24 24 C 1.38309 * 120.34337 * 90.00075 * 3 2 1 25 25 H 1.08994 * 109.47392 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47375 * 300.00517 * 1 2 3 27 27 H 1.09005 * 109.46970 * 60.00294 * 1 2 3 28 28 H 1.08997 * 109.47375 * 239.99483 * 2 1 3 29 29 H 1.08998 * 109.46610 * 119.99617 * 2 1 3 30 30 H 1.08002 * 119.45733 * 0.02562 * 4 3 2 31 31 H 1.08005 * 119.71816 * 180.27662 * 6 5 4 32 32 H 1.08004 * 119.91469 * 359.96559 * 9 8 7 33 33 H 1.08006 * 119.69462 * 180.25691 * 10 9 8 34 34 H 1.09003 * 109.47735 * 180.02562 * 13 12 11 35 35 H 1.09004 * 109.47533 * 300.00740 * 13 12 11 36 36 H 1.09009 * 109.47028 * 60.00082 * 13 12 11 37 37 H 1.08007 * 120.08917 * 179.97438 * 14 11 10 38 38 H 0.97001 * 119.99499 * 180.02562 * 19 18 16 39 39 H 1.08004 * 120.85898 * 359.97438 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2650 2.0800 -1.1943 5 7 2.7043 3.3240 -1.2118 6 6 2.9404 3.9938 -0.1029 7 6 2.7307 3.3999 1.1434 8 6 2.9951 4.1519 2.3885 9 6 2.0329 4.2048 3.3925 10 6 2.2828 4.9024 4.5561 11 6 3.4935 5.5703 4.7379 12 8 3.7198 6.2564 5.8885 13 6 2.6758 6.2491 6.8642 14 6 4.4628 5.5391 3.7569 15 6 4.2294 4.8290 2.5655 16 6 5.2122 4.7909 1.5565 17 1 5.2515 3.9563 0.8723 18 6 6.1380 5.8354 1.4410 19 7 5.9187 6.9736 2.0468 20 14 7.6860 5.6028 0.4217 21 1 7.6970 4.2350 -0.1566 22 1 7.7115 6.6037 -0.6750 23 1 8.8798 5.7850 1.2859 24 6 2.2653 2.0796 1.1936 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 1.8934 -0.5139 -0.8899 29 1 1.8932 -0.5138 0.8900 30 1 2.0833 1.5679 -2.1277 31 1 3.2953 5.0123 -0.1579 32 1 1.0895 3.6955 3.2618 33 1 1.5322 4.9350 5.3320 34 1 2.9847 6.8328 7.7314 35 1 1.7742 6.6862 6.4349 36 1 2.4717 5.2230 7.1703 37 1 5.3983 6.0586 3.9033 38 1 6.5598 7.6971 1.9664 39 1 2.0915 1.5892 2.1401 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241374820.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:01 Heat of formation + Delta-G solvation = -18.198402 kcal Electronic energy + Delta-G solvation = -21498.023827 eV Core-core repulsion = 18369.157733 eV Total energy + Delta-G solvation = -3128.866094 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.15106 -40.32167 -38.17512 -35.53013 -35.47364 -33.46739 -31.71025 -30.70958 -29.72473 -27.87292 -27.06110 -25.05181 -24.53664 -22.76773 -22.60472 -21.05899 -19.55825 -18.02676 -17.74115 -17.32411 -16.83785 -16.63710 -16.35972 -16.32130 -15.26184 -14.95732 -14.69486 -14.60385 -14.40520 -14.07632 -13.83438 -13.56444 -13.44066 -13.19836 -13.04538 -12.86391 -12.77127 -12.65017 -12.39943 -12.05473 -11.88876 -11.71882 -11.61222 -11.37329 -11.05863 -10.44495 -10.22967 -9.64946 -9.42835 -8.79490 -8.47023 -6.40055 0.19914 0.47181 0.94008 1.18530 1.35021 1.46866 1.48845 2.16428 2.65591 2.76115 3.01197 3.63884 3.68597 3.97554 4.05032 4.19510 4.25775 4.29661 4.42787 4.46755 4.49388 4.56334 4.58022 4.71301 4.74509 4.87526 5.00187 5.06681 5.09966 5.13151 5.15544 5.27654 5.43364 5.47414 5.51201 5.54653 5.83584 5.86996 5.98030 6.09670 6.12831 6.44245 6.85384 6.87956 7.00363 7.21808 8.26126 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.011717 B = 0.006798 C = 0.004523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2389.039130 B = 4117.912828 C = 6188.800013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.073 4.073 3 C -0.126 4.126 4 C 0.065 3.935 5 N -0.506 5.506 6 C 0.089 3.911 7 C -0.041 4.041 8 C -0.214 4.214 9 C -0.040 4.040 10 C -0.312 4.312 11 C 0.132 3.868 12 O -0.351 6.351 13 C 0.026 3.974 14 C -0.227 4.227 15 C 0.132 3.868 16 C -0.469 4.469 17 H 0.074 0.926 18 C 0.041 3.959 19 N -0.811 5.811 20 Si 0.970 3.030 21 H -0.263 1.263 22 H -0.264 1.264 23 H -0.262 1.262 24 C -0.092 4.092 25 H 0.078 0.922 26 H 0.046 0.954 27 H 0.054 0.946 28 H 0.091 0.909 29 H 0.078 0.922 30 H 0.175 0.825 31 H 0.132 0.868 32 H 0.122 0.878 33 H 0.130 0.870 34 H 0.115 0.885 35 H 0.054 0.946 36 H 0.059 0.941 37 H 0.102 0.898 38 H 0.290 0.710 39 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.223 -9.124 0.377 11.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.111 4.111 3 C -0.128 4.128 4 C -0.092 4.092 5 N -0.214 5.214 6 C -0.068 4.068 7 C -0.043 4.043 8 C -0.216 4.216 9 C -0.058 4.058 10 C -0.331 4.331 11 C 0.087 3.913 12 O -0.266 6.266 13 C -0.068 4.068 14 C -0.247 4.247 15 C 0.129 3.871 16 C -0.497 4.497 17 H 0.092 0.908 18 C -0.176 4.176 19 N -0.435 5.435 20 Si 0.791 3.209 21 H -0.187 1.187 22 H -0.189 1.189 23 H -0.186 1.186 24 C -0.118 4.118 25 H 0.097 0.903 26 H 0.065 0.935 27 H 0.073 0.927 28 H 0.109 0.891 29 H 0.097 0.903 30 H 0.192 0.808 31 H 0.150 0.850 32 H 0.140 0.860 33 H 0.148 0.852 34 H 0.134 0.866 35 H 0.073 0.927 36 H 0.078 0.922 37 H 0.120 0.880 38 H 0.101 0.899 39 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -6.829 -8.347 -0.339 10.790 hybrid contribution 0.585 0.213 0.653 0.902 sum -6.244 -8.134 0.314 10.259 Atomic orbital electron populations 1.21729 0.93804 1.02692 1.01772 1.20508 0.96726 0.89764 1.04098 1.21080 0.99839 0.98891 0.92998 1.23035 0.97122 0.90463 0.98615 1.67549 1.12372 1.09879 1.31621 1.22737 0.96911 0.99534 0.87583 1.19726 0.96677 0.94179 0.93695 1.18691 0.95918 1.11342 0.95648 1.20658 0.97143 0.96211 0.91811 1.20703 0.98465 1.12016 1.01946 1.19116 0.94546 0.92086 0.85511 1.85974 1.44425 1.69612 1.26561 1.23164 0.90357 1.02660 0.90668 1.20465 0.99723 1.10768 0.93758 1.17514 0.90858 0.87866 0.90845 1.19611 1.11562 1.05446 1.13111 0.90787 1.26683 1.01243 0.93610 0.96080 1.69871 1.35085 1.03007 1.35577 0.85323 0.77454 0.79600 0.78482 1.18671 1.18866 1.18599 1.21775 0.98153 0.92810 0.99072 0.90342 0.93488 0.92735 0.89092 0.90334 0.80773 0.85041 0.85988 0.85223 0.86638 0.92714 0.92239 0.87977 0.89945 0.84369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.47 9.89 71.98 0.71 -1.76 16 2 C -0.07 -1.45 6.08 29.85 0.18 -1.27 16 3 C -0.13 -3.70 5.14 -19.81 -0.10 -3.81 16 4 C 0.06 2.06 10.85 84.71 0.92 2.98 16 5 N -0.51 -20.28 10.35 -194.63 -2.01 -22.29 16 6 C 0.09 3.95 9.17 85.05 0.78 4.73 16 7 C -0.04 -1.75 4.92 -19.95 -0.10 -1.85 16 8 C -0.21 -10.14 5.55 -19.61 -0.11 -10.25 16 9 C -0.04 -1.70 9.51 22.42 0.21 -1.48 16 10 C -0.31 -13.15 9.02 22.50 0.20 -12.94 16 11 C 0.13 6.31 6.67 22.49 0.15 6.46 16 12 O -0.35 -15.10 10.48 -92.06 -0.97 -16.06 16 13 C 0.03 0.76 9.80 113.37 1.11 1.87 16 14 C -0.23 -12.28 8.59 22.79 0.20 -12.09 16 15 C 0.13 7.05 5.56 -21.14 -0.12 6.93 16 16 C -0.47 -24.95 7.13 23.36 0.17 -24.78 16 17 H 0.07 3.96 6.62 -2.91 -0.02 3.94 16 18 C 0.04 2.07 5.17 85.29 0.44 2.51 16 19 N -0.81 -42.75 10.97 21.85 0.24 -42.51 16 20 Si 0.97 39.33 29.59 68.60 2.03 41.36 16 21 H -0.26 -10.70 7.11 99.48 0.71 -10.00 16 22 H -0.26 -10.28 7.11 99.48 0.71 -9.58 16 23 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16 24 C -0.09 -3.23 9.37 22.73 0.21 -3.02 16 25 H 0.08 1.01 8.14 -2.39 -0.02 1.00 16 26 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 27 H 0.05 0.96 8.14 -2.38 -0.02 0.94 16 28 H 0.09 1.48 8.09 -2.39 -0.02 1.46 16 29 H 0.08 1.47 8.09 -2.39 -0.02 1.45 16 30 H 0.18 4.22 8.06 -2.91 -0.02 4.19 16 31 H 0.13 6.44 7.32 -2.91 -0.02 6.42 16 32 H 0.12 4.37 8.05 -2.91 -0.02 4.35 16 33 H 0.13 4.53 6.25 -2.91 -0.02 4.51 16 34 H 0.12 2.60 8.14 -2.39 -0.02 2.58 16 35 H 0.05 1.50 7.64 -2.38 -0.02 1.48 16 36 H 0.06 1.57 7.65 -2.38 -0.02 1.55 16 37 H 0.10 5.93 6.23 -2.91 -0.02 5.91 16 38 H 0.29 13.85 8.29 -92.71 -0.77 13.08 16 39 H 0.14 4.33 8.06 -2.91 -0.02 4.30 16 Total: -1.00 -63.43 328.08 5.20 -58.23 By element: Atomic # 1 Polarization: 27.99 SS G_CDS: 1.05 Total: 29.04 kcal Atomic # 6 Polarization: -52.63 SS G_CDS: 4.86 Total: -47.76 kcal Atomic # 7 Polarization: -63.03 SS G_CDS: -1.77 Total: -64.80 kcal Atomic # 8 Polarization: -15.10 SS G_CDS: -0.97 Total: -16.06 kcal Atomic # 14 Polarization: 39.33 SS G_CDS: 2.03 Total: 41.36 kcal Total: -63.43 5.20 -58.23 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241374820.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.032 kcal (2) G-P(sol) polarization free energy of solvation -63.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds