Wall clock time and date at job start Tue Mar 31 2020 06:03:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50700 * 109.47060 * 2 1 4 4 C 1.38319 * 120.35535 * 90.00445 * 3 2 1 5 5 N 1.31885 * 121.03242 * 180.02562 * 4 3 2 6 6 C 1.31745 * 121.85384 * 359.97438 * 5 4 3 7 7 C 1.39323 * 120.59357 * 0.02562 * 6 5 4 8 8 C 1.48359 * 120.53633 * 180.02562 * 7 6 5 9 9 C 1.39377 * 120.06457 * 180.22320 * 8 7 6 10 10 C 1.37908 * 119.93738 * 180.23541 * 9 8 7 11 11 C 1.38838 * 120.06260 * 359.51450 * 10 9 8 12 12 O 1.35872 * 119.93469 * 180.26008 * 11 10 9 13 13 C 1.42901 * 116.99948 * 180.02562 * 12 11 10 14 14 C 1.50702 * 109.47167 * 179.97438 * 13 12 11 15 15 H 1.08002 * 119.99917 * 0.02562 * 14 13 12 16 16 C 1.37868 * 119.99981 * 179.97438 * 14 13 12 17 17 N 1.31510 * 120.00384 * 359.97438 * 16 14 13 18 18 Si 1.86806 * 119.99984 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47398 * 89.99678 * 18 16 14 20 20 H 1.48496 * 109.46987 * 209.99984 * 18 16 14 21 21 H 1.48496 * 109.46837 * 329.99671 * 18 16 14 22 22 C 1.38830 * 120.12925 * 0.27978 * 11 10 9 23 23 C 1.37906 * 120.06652 * 359.95545 * 22 11 10 24 24 C 1.38404 * 120.36095 * 270.30974 * 3 2 1 25 25 H 1.08995 * 109.47133 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46797 * 299.99186 * 1 2 3 27 27 H 1.08998 * 109.47461 * 59.99202 * 1 2 3 28 28 H 1.08999 * 109.46646 * 240.00283 * 2 1 3 29 29 H 1.08998 * 109.47461 * 120.00798 * 2 1 3 30 30 H 1.08002 * 119.48324 * 0.04285 * 4 3 2 31 31 H 1.08003 * 119.70386 * 179.97438 * 6 5 4 32 32 H 1.08004 * 120.03364 * 0.02562 * 9 8 7 33 33 H 1.08002 * 119.97251 * 179.79787 * 10 9 8 34 34 H 1.08995 * 109.47054 * 299.99422 * 13 12 11 35 35 H 1.09006 * 109.47041 * 59.99614 * 13 12 11 36 36 H 0.96996 * 120.00461 * 179.97438 * 17 16 14 37 37 H 1.07997 * 119.96748 * 179.97438 * 22 11 10 38 38 H 1.07997 * 120.03517 * 180.02562 * 23 22 11 39 39 H 1.08003 * 120.84811 * 359.97054 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2654 2.0798 1.1936 5 7 2.7045 3.3233 1.2092 6 6 2.9406 3.9913 0.0984 7 6 2.7305 3.3976 -1.1443 8 6 2.9973 4.1508 -2.3944 9 6 2.7793 3.5487 -3.6324 10 6 3.0328 4.2496 -4.7927 11 6 3.4951 5.5572 -4.7284 12 8 3.7389 6.2472 -5.8733 13 6 4.2135 7.5879 -5.7342 14 6 4.4267 8.1895 -7.0993 15 1 4.2200 7.6065 -7.9847 16 6 4.8846 9.4845 -7.2181 17 7 5.1348 10.1950 -6.1401 18 14 5.1482 10.2305 -8.9103 19 1 3.8980 10.8949 -9.3587 20 1 6.2442 11.2303 -8.8452 21 1 5.5118 9.1593 -9.8723 22 6 3.7091 6.1610 -3.4968 23 6 3.4620 5.4634 -2.3331 24 6 2.2595 2.0825 -1.1942 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5137 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 2.0853 1.5680 2.1274 31 1 3.2994 5.0086 0.1517 32 1 2.4155 2.5331 -3.6830 33 1 2.8672 3.7826 -5.7523 34 1 3.4786 8.1785 -5.1872 35 1 5.1566 7.5846 -5.1876 36 1 5.4573 11.1059 -6.2236 37 1 4.0691 7.1781 -3.4498 38 1 3.6282 5.9337 -1.3752 39 1 2.0817 1.5937 -2.1407 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241380094.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:10 Heat of formation + Delta-G solvation = 0.163848 kcal Electronic energy + Delta-G solvation = -20315.802713 eV Core-core repulsion = 17187.732866 eV Total energy + Delta-G solvation = -3128.069847 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.52226 -39.29775 -36.92237 -34.93467 -33.16283 -32.61462 -31.02095 -29.92126 -28.66823 -27.34305 -24.74623 -24.13415 -23.04515 -22.53308 -21.11425 -20.37678 -17.88606 -16.98053 -16.73161 -16.32597 -15.99609 -15.05307 -14.73531 -14.61481 -14.42645 -14.10190 -14.06374 -14.02260 -13.57315 -12.92322 -12.81045 -12.77070 -12.40042 -12.23434 -12.12338 -11.77607 -11.47259 -11.16589 -11.12365 -11.01498 -10.63086 -10.52446 -10.21968 -9.70718 -9.49422 -9.34161 -9.10309 -8.76921 -8.60128 -7.34961 -6.30023 -4.34235 0.67750 1.13865 1.64797 2.08056 3.21002 3.26386 3.30931 3.68185 4.07546 4.21846 4.25826 4.43235 4.50484 4.57243 4.79886 4.85272 4.90190 5.01579 5.04036 5.07363 5.14556 5.27315 5.39503 5.53463 5.57872 5.65420 5.71401 5.76793 5.87940 5.92404 6.10037 6.14685 6.29253 6.47300 6.63797 6.69197 6.78542 6.89221 7.06562 7.11787 7.62152 7.88548 7.90083 8.36568 8.77457 9.31344 10.81174 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.042612 B = 0.002723 C = 0.002584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 656.939601 B =10279.013154 C =10831.927171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.080 4.080 3 C -0.128 4.128 4 C 0.082 3.918 5 N -0.477 5.477 6 C 0.089 3.911 7 C -0.060 4.060 8 C -0.119 4.119 9 C -0.066 4.066 10 C -0.169 4.169 11 C 0.166 3.834 12 O -0.313 6.313 13 C 0.191 3.809 14 C -0.526 4.526 15 H 0.071 0.929 16 C 0.061 3.939 17 N -0.894 5.894 18 Si 0.914 3.086 19 H -0.277 1.277 20 H -0.283 1.283 21 H -0.270 1.270 22 C -0.211 4.211 23 C -0.060 4.060 24 C -0.081 4.081 25 H 0.059 0.941 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.150 0.850 31 H 0.157 0.843 32 H 0.123 0.877 33 H 0.129 0.871 34 H 0.023 0.977 35 H 0.023 0.977 36 H 0.268 0.732 37 H 0.138 0.862 38 H 0.123 0.877 39 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.688 -17.562 12.066 22.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.118 4.118 3 C -0.130 4.130 4 C -0.075 4.075 5 N -0.184 5.184 6 C -0.068 4.068 7 C -0.062 4.062 8 C -0.120 4.120 9 C -0.084 4.084 10 C -0.188 4.188 11 C 0.117 3.883 12 O -0.225 6.225 13 C 0.119 3.881 14 C -0.564 4.564 15 H 0.089 0.911 16 C -0.142 4.142 17 N -0.532 5.532 18 Si 0.740 3.260 19 H -0.202 1.202 20 H -0.209 1.209 21 H -0.195 1.195 22 C -0.230 4.230 23 C -0.078 4.078 24 C -0.106 4.106 25 H 0.078 0.922 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.092 0.908 29 H 0.093 0.907 30 H 0.167 0.833 31 H 0.174 0.826 32 H 0.141 0.859 33 H 0.147 0.853 34 H 0.041 0.959 35 H 0.041 0.959 36 H 0.078 0.922 37 H 0.156 0.844 38 H 0.141 0.859 39 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -6.488 -16.997 12.721 22.200 hybrid contribution 0.122 0.368 -1.436 1.487 sum -6.366 -16.629 11.286 21.081 Atomic orbital electron populations 1.21763 0.94526 1.01842 1.02394 1.20472 0.96264 0.91891 1.03148 1.20814 1.00557 0.97614 0.94041 1.22581 0.96817 0.90871 0.97246 1.67608 1.11008 1.08417 1.31355 1.22884 0.97150 0.99917 0.86862 1.19791 0.98232 0.94025 0.94105 1.18310 1.07751 0.94646 0.91297 1.20841 0.97697 0.98885 0.90939 1.20363 1.06431 0.93065 0.98938 1.19436 0.90707 0.91516 0.86639 1.86133 1.78384 1.30482 1.27538 1.20711 0.94144 0.73902 0.99383 1.20962 1.45665 0.98121 0.91656 0.91095 1.24937 0.94813 0.96377 0.98050 1.69938 1.44525 1.10357 1.28363 0.86234 0.78044 0.78885 0.82788 1.20242 1.20863 1.19470 1.21433 1.07500 1.02213 0.91841 1.20948 0.96005 0.92888 0.97953 1.21514 0.97200 0.93678 0.98246 0.92219 0.92486 0.92456 0.90803 0.90710 0.83266 0.82612 0.85917 0.85277 0.95880 0.95874 0.92245 0.84414 0.85902 0.84802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 9.90 37.16 0.37 -0.58 16 2 C -0.08 -0.55 6.08 -27.88 -0.17 -0.72 16 3 C -0.13 -1.25 5.15 -104.53 -0.54 -1.79 16 4 C 0.08 0.88 10.85 -17.50 -0.19 0.69 16 5 N -0.48 -6.19 10.35 -12.96 -0.13 -6.33 16 6 C 0.09 1.15 10.60 -17.19 -0.18 0.96 16 7 C -0.06 -0.76 5.89 -104.75 -0.62 -1.38 16 8 C -0.12 -1.70 5.88 -104.88 -0.62 -2.32 16 9 C -0.07 -0.92 9.43 -39.28 -0.37 -1.29 16 10 C -0.17 -2.78 9.97 -39.48 -0.39 -3.17 16 11 C 0.17 3.27 6.69 -39.14 -0.26 3.01 16 12 O -0.31 -7.39 10.12 -19.34 -0.20 -7.59 16 13 C 0.19 4.97 4.49 36.01 0.16 5.13 16 14 C -0.53 -14.80 9.43 -34.44 -0.32 -15.12 16 15 H 0.07 1.97 7.81 -52.49 -0.41 1.56 16 16 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 17 N -0.89 -25.55 13.29 55.43 0.74 -24.81 16 18 Si 0.91 21.01 29.54 -169.99 -5.02 15.99 16 19 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 20 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 21 H -0.27 -6.11 7.11 56.52 0.40 -5.70 16 22 C -0.21 -3.85 9.02 -39.48 -0.36 -4.21 16 23 C -0.06 -0.91 9.43 -39.28 -0.37 -1.28 16 24 C -0.08 -0.88 9.21 -38.95 -0.36 -1.24 16 25 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 26 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.07 0.46 8.10 -51.93 -0.42 0.04 16 29 H 0.07 0.42 8.09 -51.93 -0.42 0.00 16 30 H 0.15 1.21 8.06 -52.49 -0.42 0.79 16 31 H 0.16 1.78 6.22 -52.48 -0.33 1.46 16 32 H 0.12 1.33 6.27 -52.48 -0.33 1.00 16 33 H 0.13 1.93 8.06 -52.49 -0.42 1.50 16 34 H 0.02 0.62 7.65 -51.93 -0.40 0.22 16 35 H 0.02 0.62 7.66 -51.93 -0.40 0.23 16 36 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 37 H 0.14 2.64 6.28 -52.49 -0.33 2.31 16 38 H 0.12 1.56 6.23 -52.49 -0.33 1.23 16 39 H 0.13 1.22 6.32 -52.48 -0.33 0.89 16 LS Contribution 331.58 15.07 5.00 5.00 Total: -1.00 -30.25 331.58 -8.87 -39.13 By element: Atomic # 1 Polarization: 5.28 SS G_CDS: -4.94 Total: 0.34 kcal Atomic # 6 Polarization: -17.41 SS G_CDS: -4.32 Total: -21.73 kcal Atomic # 7 Polarization: -31.74 SS G_CDS: 0.60 Total: -31.14 kcal Atomic # 8 Polarization: -7.39 SS G_CDS: -0.20 Total: -7.59 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -30.25 -8.87 -39.13 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241380094.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.291 kcal (2) G-P(sol) polarization free energy of solvation -30.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.127 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds