Wall clock time and date at job start Tue Mar 31 2020 05:57:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50695 * 109.47652 * 2 1 4 4 C 1.38364 * 119.93320 * 89.99618 * 3 2 1 5 5 C 1.38327 * 120.25853 * 180.02562 * 4 3 2 6 6 C 1.38014 * 120.12593 * 359.97438 * 5 4 3 7 7 C 1.39401 * 119.87429 * 359.97438 * 6 5 4 8 8 C 1.48256 * 120.13106 * 179.97438 * 7 6 5 9 9 C 1.40068 * 119.51584 * 4.72854 * 8 7 6 10 10 C 1.38324 * 119.56999 * 179.76339 * 9 8 7 11 11 C 1.39116 * 118.63650 * 0.50130 * 10 9 8 12 12 O 1.35535 * 120.48016 * 179.76968 * 11 10 9 13 13 C 1.42899 * 117.00470 * 359.97438 * 12 11 10 14 14 C 1.41392 * 119.03202 * 359.74744 * 11 10 9 15 15 C 1.41002 * 119.83452 * 179.97438 * 14 11 10 16 16 H 1.07993 * 120.00062 * 0.02562 * 15 14 11 17 17 C 1.40026 * 119.99576 * 180.02562 * 15 14 11 18 18 N 1.30770 * 120.00673 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 119.99566 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.47407 * 359.97438 * 19 17 15 21 21 H 1.48504 * 109.47143 * 119.99696 * 19 17 15 22 22 H 1.48497 * 109.47317 * 239.99840 * 19 17 15 23 23 N 1.32176 * 119.51740 * 185.00291 * 8 7 6 24 24 C 1.37971 * 119.93819 * 270.24094 * 3 2 1 25 25 H 1.09004 * 109.47006 * 300.00007 * 1 2 3 26 26 H 1.09004 * 109.47458 * 59.99473 * 1 2 3 27 27 H 1.09002 * 109.47332 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47006 * 239.99993 * 2 1 3 29 29 H 1.09004 * 109.47458 * 120.00527 * 2 1 3 30 30 H 1.08001 * 119.87474 * 0.02562 * 4 3 2 31 31 H 1.07993 * 119.93527 * 179.97438 * 5 4 3 32 32 H 1.08000 * 120.06139 * 180.02562 * 6 5 4 33 33 H 1.08003 * 120.21363 * 0.02562 * 9 8 7 34 34 H 1.07997 * 120.68408 * 180.24534 * 10 9 8 35 35 H 1.09001 * 109.46744 * 180.02562 * 13 12 11 36 36 H 1.08994 * 109.47084 * 300.00201 * 13 12 11 37 37 H 1.08999 * 109.46523 * 60.00373 * 13 12 11 38 38 H 0.96996 * 120.00405 * 180.02562 * 18 17 15 39 39 H 1.08004 * 120.06140 * 0.02562 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.2625 2.0717 1.1991 5 6 2.7232 3.3759 1.2069 6 6 2.9565 4.0353 0.0172 7 6 2.7275 3.3843 -1.1940 8 6 2.9756 4.0874 -2.4754 9 6 3.5347 5.3716 -2.4609 10 6 3.7712 6.0267 -3.6560 11 6 3.4336 5.3877 -4.8448 12 8 3.6449 5.9971 -6.0368 13 6 4.2208 7.3045 -6.0042 14 6 2.8674 4.0932 -4.7912 15 6 2.5185 3.4302 -5.9856 16 1 2.6842 3.9110 -6.9383 17 6 1.9570 2.1484 -5.9365 18 7 1.7568 1.5660 -4.7829 19 14 1.4940 1.2704 -7.5189 20 1 1.8186 2.1379 -8.6796 21 1 2.2562 0.0000 -7.6214 22 1 0.0386 0.9754 -7.5137 23 7 2.6611 3.4955 -3.6146 24 6 2.2572 2.0716 -1.1956 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 2.0818 1.5595 2.1326 31 1 2.9007 3.8791 2.1458 32 1 3.3166 5.0535 0.0245 33 1 3.7833 5.8456 -1.5228 34 1 4.2052 7.0156 -3.6659 35 1 4.3355 7.6764 -7.0224 36 1 3.5688 7.9748 -5.4442 37 1 5.1969 7.2595 -5.5213 38 1 1.3682 0.6779 -4.7489 39 1 2.0731 1.5639 -2.1309 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241546076.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:59 Heat of formation + Delta-G solvation = 8.767859 kcal Electronic energy + Delta-G solvation = -21533.929849 eV Core-core repulsion = 18406.233100 eV Total energy + Delta-G solvation = -3127.696749 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.23847 -38.48102 -36.62686 -34.06975 -33.39137 -31.14785 -30.51564 -28.99746 -28.49729 -26.56554 -25.51032 -23.55327 -22.49326 -21.59784 -20.69899 -19.50438 -17.47301 -16.73683 -16.18613 -15.65654 -15.03448 -14.78194 -14.67708 -14.47763 -13.84131 -13.33463 -13.08563 -12.99577 -12.83450 -12.71535 -12.50328 -12.30401 -11.65379 -11.52407 -11.40908 -11.26000 -11.20430 -10.87668 -10.66717 -10.51271 -10.41271 -10.32646 -10.25255 -9.79829 -9.47580 -8.42009 -8.14295 -8.13038 -7.77132 -6.88527 -6.46506 -4.42275 1.62923 2.03008 2.75371 2.99107 3.10530 3.15919 3.18963 3.95653 4.36612 4.38530 4.83428 5.16379 5.25049 5.38152 5.52006 5.67161 5.68064 5.70007 5.72634 5.80854 5.87461 5.90822 5.96525 6.01770 6.10181 6.20962 6.23362 6.31375 6.47749 6.60337 6.62034 6.69864 6.84294 6.99352 7.14459 7.21612 7.29899 7.43605 7.57393 7.67997 7.88241 8.17388 8.28748 8.68298 8.97080 9.97869 10.27653 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.012906 B = 0.006595 C = 0.004428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2169.057831 B = 4244.810246 C = 6322.366923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.080 4.080 3 C -0.097 4.097 4 C -0.131 4.131 5 C -0.131 4.131 6 C -0.120 4.120 7 C -0.011 4.011 8 C 0.148 3.852 9 C -0.270 4.270 10 C -0.148 4.148 11 C -0.027 4.027 12 O -0.309 6.309 13 C 0.033 3.967 14 C 0.253 3.747 15 C -0.412 4.412 16 H 0.091 0.909 17 C 0.068 3.932 18 N -0.716 5.716 19 Si 0.908 3.092 20 H -0.260 1.260 21 H -0.273 1.273 22 H -0.273 1.273 23 N -0.449 5.449 24 C -0.079 4.079 25 H 0.050 0.950 26 H 0.060 0.940 27 H 0.051 0.949 28 H 0.072 0.928 29 H 0.063 0.937 30 H 0.110 0.890 31 H 0.113 0.887 32 H 0.119 0.881 33 H 0.100 0.900 34 H 0.104 0.896 35 H 0.083 0.917 36 H 0.040 0.960 37 H 0.040 0.960 38 H 0.272 0.728 39 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.190 0.355 6.304 6.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.117 4.117 3 C -0.097 4.097 4 C -0.149 4.149 5 C -0.149 4.149 6 C -0.139 4.139 7 C -0.012 4.012 8 C 0.007 3.993 9 C -0.293 4.293 10 C -0.172 4.172 11 C -0.075 4.075 12 O -0.222 6.222 13 C -0.063 4.063 14 C 0.125 3.875 15 C -0.444 4.444 16 H 0.109 0.891 17 C -0.157 4.157 18 N -0.338 5.338 19 Si 0.733 3.267 20 H -0.183 1.183 21 H -0.199 1.199 22 H -0.199 1.199 23 N -0.164 5.164 24 C -0.097 4.097 25 H 0.069 0.931 26 H 0.079 0.921 27 H 0.070 0.930 28 H 0.090 0.910 29 H 0.081 0.919 30 H 0.128 0.872 31 H 0.131 0.869 32 H 0.137 0.863 33 H 0.118 0.882 34 H 0.122 0.878 35 H 0.102 0.898 36 H 0.058 0.942 37 H 0.058 0.942 38 H 0.083 0.917 39 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -0.296 -0.729 6.171 6.221 hybrid contribution 0.372 0.939 -0.351 1.070 sum 0.076 0.211 5.820 5.825 Atomic orbital electron populations 1.21735 0.95171 1.01061 1.02254 1.20467 0.95913 0.93120 1.02225 1.19849 1.00497 0.96151 0.93252 1.20897 1.01913 0.95137 0.96969 1.20854 1.01684 0.95066 0.97316 1.21214 1.01040 0.99834 0.91800 1.18794 0.97348 0.93615 0.91456 1.19691 0.96629 0.90798 0.92159 1.21003 1.14149 0.97768 0.96394 1.20870 1.04583 0.99210 0.92582 1.20366 1.07615 0.96048 0.83487 1.85941 1.78563 1.29217 1.28441 1.22762 0.97007 0.84599 1.01932 1.18142 0.91221 0.85886 0.92289 1.19559 1.32853 0.98982 0.92974 0.89073 1.26041 0.94576 0.97640 0.97412 1.70092 1.26354 1.12059 1.25338 0.86248 0.78729 0.79522 0.82244 1.18324 1.19854 1.19866 1.68871 1.20160 1.32148 0.95210 1.21632 0.95420 0.94100 0.98562 0.93050 0.92100 0.92968 0.90971 0.91872 0.87204 0.86895 0.86308 0.88213 0.87804 0.89836 0.94164 0.94157 0.91708 0.82920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.92 9.89 37.15 0.37 -1.55 16 2 C -0.08 -1.14 6.06 -27.89 -0.17 -1.31 16 3 C -0.10 -1.68 5.13 -104.68 -0.54 -2.22 16 4 C -0.13 -2.04 9.69 -39.50 -0.38 -2.42 16 5 C -0.13 -2.07 10.03 -39.63 -0.40 -2.47 16 6 C -0.12 -2.19 9.41 -39.23 -0.37 -2.56 16 7 C -0.01 -0.25 5.87 -104.90 -0.62 -0.86 16 8 C 0.15 3.65 6.73 -82.91 -0.56 3.09 16 9 C -0.27 -6.14 9.45 -38.86 -0.37 -6.50 16 10 C -0.15 -3.35 9.11 -39.22 -0.36 -3.71 16 11 C -0.03 -0.66 6.74 -38.06 -0.26 -0.92 16 12 O -0.31 -7.03 9.61 -18.30 -0.18 -7.20 16 13 C 0.03 0.55 9.83 101.05 0.99 1.55 16 14 C 0.25 6.94 6.56 -84.86 -0.56 6.38 16 15 C -0.41 -11.07 8.94 -37.87 -0.34 -11.40 16 16 H 0.09 2.39 7.31 -52.49 -0.38 2.01 16 17 C 0.07 1.70 5.50 -17.33 -0.10 1.61 16 18 N -0.72 -18.26 11.12 55.55 0.62 -17.65 16 19 Si 0.91 18.56 29.56 -169.99 -5.02 13.54 16 20 H -0.26 -5.28 7.11 56.52 0.40 -4.88 16 21 H -0.27 -5.49 7.11 56.52 0.40 -5.08 16 22 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 23 N -0.45 -12.17 6.91 -7.57 -0.05 -12.22 16 24 C -0.08 -1.64 9.22 -39.23 -0.36 -2.00 16 25 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 27 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 28 H 0.07 1.06 8.09 -51.93 -0.42 0.64 16 29 H 0.06 0.78 8.08 -51.93 -0.42 0.36 16 30 H 0.11 1.41 8.06 -52.49 -0.42 0.99 16 31 H 0.11 1.44 8.06 -52.49 -0.42 1.02 16 32 H 0.12 2.00 6.19 -52.49 -0.32 1.67 16 33 H 0.10 1.98 6.19 -52.48 -0.32 1.66 16 34 H 0.10 2.00 6.43 -52.49 -0.34 1.67 16 35 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 36 H 0.04 0.62 7.69 -51.93 -0.40 0.22 16 37 H 0.04 0.62 7.69 -51.93 -0.40 0.23 16 38 H 0.27 6.25 8.29 -40.82 -0.34 5.91 16 39 H 0.15 3.53 7.20 -52.48 -0.38 3.15 16 LS Contribution 328.53 15.07 4.95 4.95 Total: -1.00 -29.12 328.53 -8.74 -37.86 By element: Atomic # 1 Polarization: 11.09 SS G_CDS: -5.06 Total: 6.04 kcal Atomic # 6 Polarization: -21.31 SS G_CDS: -4.00 Total: -25.31 kcal Atomic # 7 Polarization: -30.43 SS G_CDS: 0.57 Total: -29.87 kcal Atomic # 8 Polarization: -7.03 SS G_CDS: -0.18 Total: -7.20 kcal Atomic # 14 Polarization: 18.56 SS G_CDS: -5.02 Total: 13.54 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -29.12 -8.74 -37.86 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241546076.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.629 kcal (2) G-P(sol) polarization free energy of solvation -29.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.861 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds