Wall clock time and date at job start Tue Mar 31 2020 05:57:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50695 * 109.47652 * 2 1 4 4 C 1.38364 * 119.93320 * 89.99618 * 3 2 1 5 5 C 1.38327 * 120.25853 * 180.02562 * 4 3 2 6 6 C 1.38014 * 120.12593 * 359.97438 * 5 4 3 7 7 C 1.39401 * 119.87429 * 359.97438 * 6 5 4 8 8 C 1.48256 * 120.13106 * 179.97438 * 7 6 5 9 9 C 1.40068 * 119.51584 * 4.72854 * 8 7 6 10 10 C 1.38324 * 119.56999 * 179.76339 * 9 8 7 11 11 C 1.39116 * 118.63650 * 0.50130 * 10 9 8 12 12 O 1.35535 * 120.48016 * 179.76968 * 11 10 9 13 13 C 1.42899 * 117.00470 * 359.97438 * 12 11 10 14 14 C 1.41392 * 119.03202 * 359.74744 * 11 10 9 15 15 C 1.41002 * 119.83452 * 179.97438 * 14 11 10 16 16 H 1.07993 * 120.00062 * 0.02562 * 15 14 11 17 17 C 1.40026 * 119.99576 * 180.02562 * 15 14 11 18 18 N 1.30770 * 120.00673 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 119.99566 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.47407 * 359.97438 * 19 17 15 21 21 H 1.48504 * 109.47143 * 119.99696 * 19 17 15 22 22 H 1.48497 * 109.47317 * 239.99840 * 19 17 15 23 23 N 1.32176 * 119.51740 * 185.00291 * 8 7 6 24 24 C 1.37971 * 119.93819 * 270.24094 * 3 2 1 25 25 H 1.09004 * 109.47006 * 300.00007 * 1 2 3 26 26 H 1.09004 * 109.47458 * 59.99473 * 1 2 3 27 27 H 1.09002 * 109.47332 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47006 * 239.99993 * 2 1 3 29 29 H 1.09004 * 109.47458 * 120.00527 * 2 1 3 30 30 H 1.08001 * 119.87474 * 0.02562 * 4 3 2 31 31 H 1.07993 * 119.93527 * 179.97438 * 5 4 3 32 32 H 1.08000 * 120.06139 * 180.02562 * 6 5 4 33 33 H 1.08003 * 120.21363 * 0.02562 * 9 8 7 34 34 H 1.07997 * 120.68408 * 180.24534 * 10 9 8 35 35 H 1.09001 * 109.46744 * 180.02562 * 13 12 11 36 36 H 1.08994 * 109.47084 * 300.00201 * 13 12 11 37 37 H 1.08999 * 109.46523 * 60.00373 * 13 12 11 38 38 H 0.96996 * 120.00405 * 180.02562 * 18 17 15 39 39 H 1.08004 * 120.06140 * 0.02562 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.2625 2.0717 1.1991 5 6 2.7232 3.3759 1.2069 6 6 2.9565 4.0353 0.0172 7 6 2.7275 3.3843 -1.1940 8 6 2.9756 4.0874 -2.4754 9 6 3.5347 5.3716 -2.4609 10 6 3.7712 6.0267 -3.6560 11 6 3.4336 5.3877 -4.8448 12 8 3.6449 5.9971 -6.0368 13 6 4.2208 7.3045 -6.0042 14 6 2.8674 4.0932 -4.7912 15 6 2.5185 3.4302 -5.9856 16 1 2.6842 3.9110 -6.9383 17 6 1.9570 2.1484 -5.9365 18 7 1.7568 1.5660 -4.7829 19 14 1.4940 1.2704 -7.5189 20 1 1.8186 2.1379 -8.6796 21 1 2.2562 0.0000 -7.6214 22 1 0.0386 0.9754 -7.5137 23 7 2.6611 3.4955 -3.6146 24 6 2.2572 2.0716 -1.1956 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 2.0818 1.5595 2.1326 31 1 2.9007 3.8791 2.1458 32 1 3.3166 5.0535 0.0245 33 1 3.7833 5.8456 -1.5228 34 1 4.2052 7.0156 -3.6659 35 1 4.3355 7.6764 -7.0224 36 1 3.5688 7.9748 -5.4442 37 1 5.1969 7.2595 -5.5213 38 1 1.3682 0.6779 -4.7489 39 1 2.0731 1.5639 -2.1309 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241546076.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:58 Heat of formation + Delta-G solvation = -6.287421 kcal Electronic energy + Delta-G solvation = -21534.582695 eV Core-core repulsion = 18406.233100 eV Total energy + Delta-G solvation = -3128.349595 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.90644 -39.97713 -38.32417 -35.73625 -34.84541 -32.69133 -32.34787 -30.41415 -30.03919 -28.09888 -27.26355 -24.81711 -24.08546 -23.30315 -22.19436 -21.02875 -19.29670 -18.46694 -17.75656 -17.17545 -16.70728 -16.35465 -16.19190 -15.87274 -15.27861 -14.73661 -14.70342 -14.39009 -14.32591 -14.16735 -14.12076 -13.77203 -13.19256 -12.97934 -12.95770 -12.77761 -12.58614 -12.56539 -12.11311 -12.05980 -11.94755 -11.70242 -11.58534 -11.47942 -11.28069 -10.07183 -9.90152 -9.62280 -9.49723 -8.63292 -8.30434 -6.37366 0.09897 0.64481 0.95775 1.27758 1.39624 1.53405 1.54816 2.23765 2.76006 2.81629 3.12605 3.82153 3.91523 3.93294 4.07551 4.22957 4.29510 4.39850 4.43901 4.45804 4.53447 4.56404 4.61082 4.70276 4.72891 4.82837 4.93159 4.97258 5.08491 5.10727 5.25371 5.27565 5.36410 5.42716 5.52649 5.61248 5.69569 5.83975 5.93102 6.11123 6.30187 6.31702 6.39551 6.80135 7.12975 8.11222 8.45121 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.012906 B = 0.006595 C = 0.004428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2169.057831 B = 4244.810246 C = 6322.366923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.079 4.079 3 C -0.099 4.099 4 C -0.120 4.120 5 C -0.120 4.120 6 C -0.123 4.123 7 C -0.048 4.048 8 C 0.123 3.877 9 C -0.268 4.268 10 C -0.147 4.147 11 C -0.045 4.045 12 O -0.334 6.334 13 C 0.025 3.975 14 C 0.213 3.787 15 C -0.451 4.451 16 H 0.084 0.916 17 C 0.025 3.975 18 N -0.747 5.747 19 Si 0.984 3.016 20 H -0.259 1.259 21 H -0.265 1.265 22 H -0.265 1.265 23 N -0.477 5.477 24 C -0.107 4.107 25 H 0.063 0.937 26 H 0.031 0.969 27 H 0.074 0.926 28 H 0.056 0.944 29 H 0.094 0.906 30 H 0.151 0.849 31 H 0.156 0.844 32 H 0.133 0.867 33 H 0.132 0.868 34 H 0.140 0.860 35 H 0.114 0.886 36 H 0.052 0.948 37 H 0.052 0.948 38 H 0.278 0.722 39 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.366 0.667 8.744 8.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.117 4.117 3 C -0.099 4.099 4 C -0.138 4.138 5 C -0.138 4.138 6 C -0.142 4.142 7 C -0.049 4.049 8 C -0.018 4.018 9 C -0.291 4.291 10 C -0.171 4.171 11 C -0.094 4.094 12 O -0.247 6.247 13 C -0.071 4.071 14 C 0.085 3.915 15 C -0.483 4.483 16 H 0.102 0.898 17 C -0.197 4.197 18 N -0.369 5.369 19 Si 0.804 3.196 20 H -0.182 1.182 21 H -0.189 1.189 22 H -0.190 1.190 23 N -0.192 5.192 24 C -0.126 4.126 25 H 0.082 0.918 26 H 0.050 0.950 27 H 0.093 0.907 28 H 0.075 0.925 29 H 0.113 0.887 30 H 0.169 0.831 31 H 0.173 0.827 32 H 0.150 0.850 33 H 0.150 0.850 34 H 0.158 0.842 35 H 0.133 0.867 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.088 0.912 39 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -0.108 -0.393 8.628 8.638 hybrid contribution 0.373 0.947 -0.943 1.387 sum 0.265 0.554 7.685 7.710 Atomic orbital electron populations 1.21695 0.94325 1.02299 1.01423 1.20530 0.96569 0.91545 1.03013 1.20145 0.99687 0.97403 0.92651 1.21374 0.99670 0.95140 0.97602 1.21331 0.99521 0.95067 0.97880 1.21401 1.00944 1.00496 0.91393 1.18919 1.00089 0.94347 0.91546 1.20372 0.96583 0.92016 0.92820 1.21419 1.12642 0.97170 0.97873 1.21260 1.03685 1.00478 0.91665 1.20412 1.08027 0.95921 0.85029 1.85882 1.79161 1.31888 1.27804 1.23125 0.97357 0.82102 1.04468 1.18623 0.92390 0.87639 0.92880 1.19728 1.35273 1.00506 0.92763 0.89821 1.26891 0.94067 0.97771 1.00946 1.70201 1.26901 1.12540 1.27293 0.85138 0.78640 0.78165 0.77653 1.18230 1.18928 1.18985 1.68836 1.21069 1.33346 0.95914 1.21482 0.97763 0.94532 0.98818 0.91770 0.94962 0.90737 0.92479 0.88731 0.83093 0.82654 0.84968 0.85046 0.84209 0.86737 0.92986 0.92983 0.91177 0.86575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.54 9.89 71.98 0.71 -2.83 16 2 C -0.08 -2.17 6.06 29.84 0.18 -1.99 16 3 C -0.10 -3.32 5.13 -19.90 -0.10 -3.42 16 4 C -0.12 -3.29 9.69 22.32 0.22 -3.08 16 5 C -0.12 -3.33 10.03 22.24 0.22 -3.11 16 6 C -0.12 -4.31 9.41 22.50 0.21 -4.10 16 7 C -0.05 -2.14 5.87 -20.04 -0.12 -2.26 16 8 C 0.12 6.29 6.73 42.20 0.28 6.57 16 9 C -0.27 -12.23 9.45 22.73 0.21 -12.01 16 10 C -0.15 -6.62 9.11 22.50 0.21 -6.42 16 11 C -0.05 -2.35 6.74 23.26 0.16 -2.19 16 12 O -0.33 -15.53 9.61 -88.39 -0.85 -16.38 16 13 C 0.02 0.78 9.83 113.37 1.11 1.90 16 14 C 0.21 12.44 6.56 40.33 0.26 12.70 16 15 C -0.45 -25.85 8.94 23.38 0.21 -25.64 16 16 H 0.08 4.70 7.31 -2.91 -0.02 4.68 16 17 C 0.02 1.31 5.50 85.28 0.47 1.78 16 18 N -0.75 -40.74 11.12 21.84 0.24 -40.50 16 19 Si 0.98 39.87 29.56 68.60 2.03 41.90 16 20 H -0.26 -10.30 7.11 99.48 0.71 -9.59 16 21 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16 22 H -0.27 -10.27 7.11 99.48 0.71 -9.56 16 23 N -0.48 -27.55 6.91 -177.86 -1.23 -28.78 16 24 C -0.11 -4.67 9.22 22.50 0.21 -4.46 16 25 H 0.06 1.44 8.14 -2.38 -0.02 1.42 16 26 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 28 H 0.06 1.72 8.09 -2.38 -0.02 1.70 16 29 H 0.09 2.00 8.08 -2.39 -0.02 1.98 16 30 H 0.15 2.96 8.06 -2.91 -0.02 2.94 16 31 H 0.16 3.02 8.06 -2.91 -0.02 3.00 16 32 H 0.13 4.12 6.19 -2.91 -0.02 4.10 16 33 H 0.13 4.99 6.19 -2.91 -0.02 4.97 16 34 H 0.14 5.12 6.43 -2.91 -0.02 5.10 16 35 H 0.11 2.89 8.14 -2.39 -0.02 2.87 16 36 H 0.05 1.53 7.69 -2.39 -0.02 1.51 16 37 H 0.05 1.53 7.69 -2.39 -0.02 1.51 16 38 H 0.28 13.66 8.29 -92.71 -0.77 12.89 16 39 H 0.12 5.87 7.20 -2.91 -0.02 5.85 16 Total: -1.00 -69.70 328.53 5.70 -64.01 By element: Atomic # 1 Polarization: 27.26 SS G_CDS: 1.05 Total: 28.31 kcal Atomic # 6 Polarization: -53.01 SS G_CDS: 4.45 Total: -48.56 kcal Atomic # 7 Polarization: -68.29 SS G_CDS: -0.99 Total: -69.28 kcal Atomic # 8 Polarization: -15.53 SS G_CDS: -0.85 Total: -16.38 kcal Atomic # 14 Polarization: 39.87 SS G_CDS: 2.03 Total: 41.90 kcal Total: -69.70 5.70 -64.01 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241546076.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.719 kcal (2) G-P(sol) polarization free energy of solvation -69.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds