Wall clock time and date at job start Tue Mar 31 2020 05:35:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38357 * 119.87357 * 2 1 4 4 C 1.37973 * 120.12922 * 179.97438 * 3 2 1 5 5 C 1.50700 * 120.06566 * 180.02562 * 4 3 2 6 6 C 1.39417 * 119.87385 * 0.02562 * 4 3 2 7 7 C 1.48289 * 120.12846 * 179.97438 * 6 4 3 8 8 C 1.39425 * 119.64743 * 172.51395 * 7 6 4 9 9 C 1.38223 * 119.14098 * 180.27396 * 8 7 6 10 10 C 1.39421 * 118.45605 * 359.50546 * 9 8 7 11 11 O 1.35718 * 120.38622 * 180.23863 * 10 9 8 12 12 C 1.34815 * 117.00010 * 5.79845 * 11 10 9 13 13 H 1.07997 * 119.99882 * 354.93272 * 12 11 10 14 14 C 1.38647 * 119.99804 * 174.93995 * 12 11 10 15 15 N 1.31560 * 120.00204 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 120.00023 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.47339 * 59.99786 * 16 14 12 18 18 H 1.48495 * 109.47466 * 179.97438 * 16 14 12 19 19 H 1.48502 * 109.47030 * 300.00019 * 16 14 12 20 20 C 1.38961 * 119.22575 * 0.49394 * 10 9 8 21 21 N 1.31654 * 120.78789 * 359.74872 * 20 10 9 22 22 C 1.39381 * 119.74499 * 0.25478 * 6 4 3 23 23 C 1.38024 * 119.86857 * 359.44632 * 22 6 4 24 24 C 1.50698 * 119.93549 * 180.27561 * 23 22 6 25 25 H 1.08997 * 109.47136 * 90.00747 * 1 2 3 26 26 H 1.09002 * 109.46988 * 209.99981 * 1 2 3 27 27 H 1.08998 * 109.47278 * 330.00229 * 1 2 3 28 28 H 1.08003 * 119.93090 * 359.97438 * 3 2 1 29 29 H 1.09005 * 109.47091 * 262.60623 * 5 4 3 30 30 H 1.08999 * 109.47325 * 22.60571 * 5 4 3 31 31 H 1.09001 * 109.47305 * 142.60739 * 5 4 3 32 32 H 1.07995 * 120.43212 * 359.97438 * 8 7 6 33 33 H 1.07999 * 120.77107 * 179.72448 * 9 8 7 34 34 H 0.96996 * 119.99774 * 179.97438 * 15 14 12 35 35 H 1.07997 * 119.60252 * 179.72551 * 20 10 9 36 36 H 1.07999 * 120.06078 * 179.74754 * 22 6 4 37 37 H 1.09011 * 109.47007 * 270.29985 * 24 23 22 38 38 H 1.09004 * 109.47168 * 30.30023 * 24 23 22 39 39 H 1.09001 * 109.47333 * 150.30091 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1961 1.1997 0.0000 4 6 3.5758 1.2059 0.0005 5 6 4.3250 2.5135 0.0011 6 6 4.2756 0.0001 0.0005 7 6 5.7585 0.0001 0.0005 8 6 6.4482 -1.2013 0.1584 9 6 7.8304 -1.1884 0.1625 10 6 8.4839 0.0320 -0.0028 11 8 9.8398 0.0893 -0.0099 12 6 10.5022 -1.0843 0.0274 13 1 9.9564 -2.0089 0.1434 14 6 11.8841 -1.1042 -0.0830 15 7 12.5490 0.0222 -0.2247 16 14 12.8019 -2.7304 -0.0321 17 1 12.3403 -3.5945 -1.1482 18 1 14.2592 -2.4809 -0.1701 19 1 12.5356 -3.4087 1.2618 20 6 7.7306 1.1898 -0.1550 21 7 6.4149 1.1434 -0.1493 22 6 3.5761 -1.2055 -0.0054 23 6 2.1959 -1.1993 0.0004 24 6 1.4381 -2.5019 0.0002 25 1 -0.3633 -0.0001 -1.0276 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3634 0.8900 0.5138 28 1 1.6529 2.1332 -0.0004 29 1 4.6208 2.7632 -1.0179 30 1 3.6823 3.3003 0.3961 31 1 5.2138 2.4227 0.6255 32 1 5.9096 -2.1293 0.2808 33 1 8.3911 -2.1029 0.2874 34 1 13.5158 0.0082 -0.3016 35 1 8.2305 2.1391 -0.2791 36 1 4.1131 -2.1425 -0.0095 37 1 1.2557 -2.8161 -1.0276 38 1 2.0244 -3.2634 0.5144 39 1 0.4859 -2.3683 0.5137 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241628608.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:18 Heat of formation + Delta-G solvation = 24.030016 kcal Electronic energy + Delta-G solvation = -20953.749194 eV Core-core repulsion = 17826.714262 eV Total energy + Delta-G solvation = -3127.034932 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.08096 -39.06275 -37.22453 -34.15570 -32.70158 -32.42506 -31.31668 -29.55779 -28.88349 -26.69647 -25.50848 -24.53144 -23.12072 -22.21063 -21.19603 -19.59782 -18.20120 -17.16043 -16.23737 -15.68888 -15.01561 -14.91444 -14.60638 -14.44507 -14.05049 -13.91657 -13.67651 -13.16576 -13.00510 -12.91052 -12.83712 -12.52678 -12.32624 -12.13428 -11.91605 -11.86892 -11.54074 -11.41466 -11.18866 -11.05283 -10.80366 -10.64029 -10.61762 -9.78958 -9.17239 -9.03231 -8.59670 -8.58829 -8.23171 -7.14297 -6.65409 -4.21749 1.16535 1.61598 2.01218 2.38233 3.02633 3.04438 3.06980 3.80421 3.91866 4.60914 4.69018 4.88152 4.93800 4.96407 5.08830 5.12041 5.25523 5.31909 5.43950 5.46901 5.57947 5.63832 5.68518 5.78148 5.78877 5.83427 5.95847 6.02336 6.08737 6.24494 6.30398 6.31965 6.49815 6.56707 6.73997 6.78478 6.89066 6.95554 7.04288 7.15776 7.24959 7.49222 7.76951 8.69273 8.78902 9.42979 10.50761 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.031769 B = 0.003467 C = 0.003137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.139616 B = 8073.121359 C = 8922.602244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.098 4.098 3 C -0.122 4.122 4 C -0.064 4.064 5 C -0.106 4.106 6 C -0.011 4.011 7 C 0.042 3.958 8 C -0.100 4.100 9 C -0.201 4.201 10 C 0.107 3.893 11 O -0.159 6.159 12 C -0.395 4.395 13 H 0.094 0.906 14 C 0.043 3.957 15 N -0.852 5.852 16 Si 0.944 3.056 17 H -0.268 1.268 18 H -0.276 1.276 19 H -0.268 1.268 20 C 0.028 3.972 21 N -0.424 5.424 22 C -0.113 4.113 23 C -0.097 4.097 24 C -0.113 4.113 25 H 0.065 0.935 26 H 0.066 0.934 27 H 0.061 0.939 28 H 0.117 0.883 29 H 0.068 0.932 30 H 0.040 0.960 31 H 0.099 0.901 32 H 0.120 0.880 33 H 0.137 0.863 34 H 0.275 0.725 35 H 0.153 0.847 36 H 0.122 0.878 37 H 0.066 0.934 38 H 0.062 0.938 39 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.626 -2.486 0.591 17.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.098 4.098 3 C -0.140 4.140 4 C -0.065 4.065 5 C -0.162 4.162 6 C -0.012 4.012 7 C -0.092 4.092 8 C -0.120 4.120 9 C -0.227 4.227 10 C 0.050 3.950 11 O -0.059 6.059 12 C -0.471 4.471 13 H 0.111 0.889 14 C -0.163 4.163 15 N -0.484 5.484 16 Si 0.768 3.232 17 H -0.193 1.193 18 H -0.200 1.200 19 H -0.193 1.193 20 C -0.135 4.135 21 N -0.134 5.134 22 C -0.132 4.132 23 C -0.097 4.097 24 C -0.169 4.169 25 H 0.084 0.916 26 H 0.085 0.915 27 H 0.080 0.920 28 H 0.135 0.865 29 H 0.087 0.913 30 H 0.059 0.941 31 H 0.117 0.883 32 H 0.138 0.862 33 H 0.155 0.845 34 H 0.085 0.915 35 H 0.170 0.830 36 H 0.139 0.861 37 H 0.085 0.915 38 H 0.081 0.919 39 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -17.628 -1.473 0.460 17.696 hybrid contribution 1.056 -1.722 0.099 2.022 sum -16.572 -3.195 0.559 16.887 Atomic orbital electron populations 1.20802 0.91822 1.02367 1.01890 1.19665 0.95495 0.92688 1.01997 1.20805 0.93447 0.97104 1.02603 1.20017 0.92990 0.95463 0.98009 1.21022 1.00263 0.91645 1.03286 1.18362 0.90500 0.92616 0.99679 1.19100 0.91767 0.89246 1.09081 1.21685 0.93983 0.97954 0.98408 1.21467 0.94160 0.98865 1.08236 1.20552 0.85819 0.94455 0.94215 1.83960 1.11826 1.33330 1.76821 1.21358 0.89632 0.83778 1.52284 0.88875 1.25364 0.95580 0.99457 0.95938 1.70021 1.08754 1.26252 1.43403 0.85723 0.78410 0.79662 0.79381 1.19278 1.20032 1.19274 1.21862 0.88390 0.96954 1.06271 1.67694 1.08030 1.27500 1.10175 1.20987 0.93185 0.97312 1.01683 1.19508 0.93335 0.94642 1.02183 1.20804 0.99828 0.94298 1.01985 0.91609 0.91490 0.92001 0.86480 0.91349 0.94056 0.88324 0.86189 0.84516 0.91517 0.82980 0.86058 0.91543 0.91859 0.91482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.03 9.60 36.00 0.35 -0.68 16 2 C -0.10 -1.24 5.88 -104.55 -0.62 -1.85 16 3 C -0.12 -1.66 9.31 -39.63 -0.37 -2.03 16 4 C -0.06 -1.02 5.91 -104.28 -0.62 -1.63 16 5 C -0.11 -1.61 8.54 36.01 0.31 -1.30 16 6 C -0.01 -0.18 5.87 -104.90 -0.62 -0.80 16 7 C 0.04 0.80 6.65 -82.92 -0.55 0.25 16 8 C -0.10 -1.87 9.44 -39.14 -0.37 -2.24 16 9 C -0.20 -4.23 9.25 -39.15 -0.36 -4.59 16 10 C 0.11 2.50 6.67 -38.87 -0.26 2.24 16 11 O -0.16 -4.31 9.76 0.19 0.00 -4.31 16 12 C -0.39 -10.47 9.50 30.88 0.29 -10.18 16 13 H 0.09 2.26 5.25 -52.49 -0.28 1.99 16 14 C 0.04 1.12 5.49 -17.52 -0.10 1.03 16 15 N -0.85 -23.81 13.67 55.48 0.76 -23.05 16 16 Si 0.94 19.48 29.55 -169.99 -5.02 14.45 16 17 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 18 H -0.28 -5.56 7.11 56.52 0.40 -5.16 16 19 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 20 C 0.03 0.60 11.14 -17.36 -0.19 0.41 16 21 N -0.42 -8.45 6.24 -9.61 -0.06 -8.51 16 22 C -0.11 -1.67 9.06 -39.23 -0.36 -2.02 16 23 C -0.10 -1.25 5.87 -104.67 -0.61 -1.87 16 24 C -0.11 -1.09 9.60 36.00 0.35 -0.74 16 25 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.07 0.53 5.93 -51.93 -0.31 0.23 16 27 H 0.06 0.51 8.08 -51.93 -0.42 0.09 16 28 H 0.12 1.35 8.05 -52.48 -0.42 0.93 16 29 H 0.07 1.06 8.13 -51.93 -0.42 0.64 16 30 H 0.04 0.53 8.03 -51.93 -0.42 0.11 16 31 H 0.10 1.68 5.73 -51.93 -0.30 1.39 16 32 H 0.12 1.86 6.25 -52.49 -0.33 1.53 16 33 H 0.14 2.77 5.75 -52.49 -0.30 2.47 16 34 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 35 H 0.15 2.99 8.06 -52.49 -0.42 2.57 16 36 H 0.12 1.62 6.25 -52.49 -0.33 1.29 16 37 H 0.07 0.59 8.14 -51.92 -0.42 0.17 16 38 H 0.06 0.57 8.09 -51.93 -0.42 0.15 16 39 H 0.07 0.55 5.93 -51.93 -0.31 0.24 16 LS Contribution 322.44 15.07 4.86 4.86 Total: -1.00 -29.18 322.44 -7.84 -37.02 By element: Atomic # 1 Polarization: 10.20 SS G_CDS: -4.65 Total: 5.55 kcal Atomic # 6 Polarization: -22.28 SS G_CDS: -3.73 Total: -26.01 kcal Atomic # 7 Polarization: -32.26 SS G_CDS: 0.70 Total: -31.56 kcal Atomic # 8 Polarization: -4.31 SS G_CDS: 0.00 Total: -4.31 kcal Atomic # 14 Polarization: 19.48 SS G_CDS: -5.02 Total: 14.45 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -29.18 -7.84 -37.02 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241628608.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.051 kcal (2) G-P(sol) polarization free energy of solvation -29.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.021 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds