Wall clock time and date at job start Tue Mar 31 2020 05:35:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38357 * 119.87357 * 2 1 4 4 C 1.37973 * 120.12922 * 179.97438 * 3 2 1 5 5 C 1.50700 * 120.06566 * 180.02562 * 4 3 2 6 6 C 1.39417 * 119.87385 * 0.02562 * 4 3 2 7 7 C 1.48289 * 120.12846 * 179.97438 * 6 4 3 8 8 C 1.39425 * 119.64743 * 172.51395 * 7 6 4 9 9 C 1.38223 * 119.14098 * 180.27396 * 8 7 6 10 10 C 1.39421 * 118.45605 * 359.50546 * 9 8 7 11 11 O 1.35718 * 120.38622 * 180.23863 * 10 9 8 12 12 C 1.34815 * 117.00010 * 5.79845 * 11 10 9 13 13 H 1.07997 * 119.99882 * 354.93272 * 12 11 10 14 14 C 1.38647 * 119.99804 * 174.93995 * 12 11 10 15 15 N 1.31560 * 120.00204 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 120.00023 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.47339 * 59.99786 * 16 14 12 18 18 H 1.48495 * 109.47466 * 179.97438 * 16 14 12 19 19 H 1.48502 * 109.47030 * 300.00019 * 16 14 12 20 20 C 1.38961 * 119.22575 * 0.49394 * 10 9 8 21 21 N 1.31654 * 120.78789 * 359.74872 * 20 10 9 22 22 C 1.39381 * 119.74499 * 0.25478 * 6 4 3 23 23 C 1.38024 * 119.86857 * 359.44632 * 22 6 4 24 24 C 1.50698 * 119.93549 * 180.27561 * 23 22 6 25 25 H 1.08997 * 109.47136 * 90.00747 * 1 2 3 26 26 H 1.09002 * 109.46988 * 209.99981 * 1 2 3 27 27 H 1.08998 * 109.47278 * 330.00229 * 1 2 3 28 28 H 1.08003 * 119.93090 * 359.97438 * 3 2 1 29 29 H 1.09005 * 109.47091 * 262.60623 * 5 4 3 30 30 H 1.08999 * 109.47325 * 22.60571 * 5 4 3 31 31 H 1.09001 * 109.47305 * 142.60739 * 5 4 3 32 32 H 1.07995 * 120.43212 * 359.97438 * 8 7 6 33 33 H 1.07999 * 120.77107 * 179.72448 * 9 8 7 34 34 H 0.96996 * 119.99774 * 179.97438 * 15 14 12 35 35 H 1.07997 * 119.60252 * 179.72551 * 20 10 9 36 36 H 1.07999 * 120.06078 * 179.74754 * 22 6 4 37 37 H 1.09011 * 109.47007 * 270.29985 * 24 23 22 38 38 H 1.09004 * 109.47168 * 30.30023 * 24 23 22 39 39 H 1.09001 * 109.47333 * 150.30091 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1961 1.1997 0.0000 4 6 3.5758 1.2059 0.0005 5 6 4.3250 2.5135 0.0011 6 6 4.2756 0.0001 0.0005 7 6 5.7585 0.0001 0.0005 8 6 6.4482 -1.2013 0.1584 9 6 7.8304 -1.1884 0.1625 10 6 8.4839 0.0320 -0.0028 11 8 9.8398 0.0893 -0.0099 12 6 10.5022 -1.0843 0.0274 13 1 9.9564 -2.0089 0.1434 14 6 11.8841 -1.1042 -0.0830 15 7 12.5490 0.0222 -0.2247 16 14 12.8019 -2.7304 -0.0321 17 1 12.3403 -3.5945 -1.1482 18 1 14.2592 -2.4809 -0.1701 19 1 12.5356 -3.4087 1.2618 20 6 7.7306 1.1898 -0.1550 21 7 6.4149 1.1434 -0.1493 22 6 3.5761 -1.2055 -0.0054 23 6 2.1959 -1.1993 0.0004 24 6 1.4381 -2.5019 0.0002 25 1 -0.3633 -0.0001 -1.0276 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3634 0.8900 0.5138 28 1 1.6529 2.1332 -0.0004 29 1 4.6208 2.7632 -1.0179 30 1 3.6823 3.3003 0.3961 31 1 5.2138 2.4227 0.6255 32 1 5.9096 -2.1293 0.2808 33 1 8.3911 -2.1029 0.2874 34 1 13.5158 0.0082 -0.3016 35 1 8.2305 2.1391 -0.2791 36 1 4.1131 -2.1425 -0.0095 37 1 1.2557 -2.8161 -1.0276 38 1 2.0244 -3.2634 0.5144 39 1 0.4859 -2.3683 0.5137 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241628608.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:18 Heat of formation + Delta-G solvation = 9.484104 kcal Electronic energy + Delta-G solvation = -20954.379952 eV Core-core repulsion = 17826.714262 eV Total energy + Delta-G solvation = -3127.665690 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.57101 -40.41444 -38.88846 -35.30502 -34.39090 -33.82779 -32.79362 -30.93308 -29.97821 -28.04861 -27.05623 -25.70329 -24.64237 -23.65070 -22.48811 -20.85402 -19.96578 -18.89235 -17.64702 -17.10960 -16.37452 -16.29021 -16.04567 -15.93720 -15.32223 -15.26220 -15.07533 -14.45021 -14.43335 -14.34639 -13.72253 -13.62753 -13.58984 -13.49194 -13.35482 -13.00617 -12.78506 -12.71163 -12.58590 -12.20779 -12.19357 -11.89902 -11.73653 -11.55176 -10.95706 -10.60811 -10.15183 -9.97989 -9.38312 -8.66544 -8.54242 -6.21784 -0.17393 0.34921 0.52505 0.93974 1.35064 1.46105 1.51340 2.12885 2.64631 2.92963 3.15100 3.23626 3.49585 3.75640 3.97820 3.99517 4.05148 4.10951 4.22809 4.35458 4.38521 4.54206 4.68461 4.78407 4.80632 4.84126 4.89671 4.94360 4.96925 5.03168 5.06183 5.11087 5.22656 5.27385 5.34890 5.39219 5.54391 5.59477 5.74616 5.81418 5.89711 5.92903 6.20976 6.88025 7.05502 7.61246 8.66843 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.031769 B = 0.003467 C = 0.003137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.139616 B = 8073.121359 C = 8922.602244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.090 4.090 3 C -0.128 4.128 4 C -0.078 4.078 5 C -0.102 4.102 6 C -0.051 4.051 7 C 0.060 3.940 8 C -0.102 4.102 9 C -0.197 4.197 10 C 0.077 3.923 11 O -0.210 6.210 12 C -0.420 4.420 13 H 0.106 0.894 14 C -0.016 4.016 15 N -0.912 5.912 16 Si 1.020 2.980 17 H -0.256 1.256 18 H -0.272 1.272 19 H -0.255 1.255 20 C 0.021 3.979 21 N -0.427 5.427 22 C -0.114 4.114 23 C -0.102 4.102 24 C -0.112 4.112 25 H 0.079 0.921 26 H 0.083 0.917 27 H 0.073 0.927 28 H 0.139 0.861 29 H 0.059 0.941 30 H 0.064 0.936 31 H 0.076 0.924 32 H 0.158 0.842 33 H 0.143 0.857 34 H 0.276 0.724 35 H 0.156 0.844 36 H 0.134 0.866 37 H 0.077 0.923 38 H 0.070 0.930 39 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.748 -4.585 0.778 22.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.090 4.090 3 C -0.146 4.146 4 C -0.079 4.079 5 C -0.158 4.158 6 C -0.052 4.052 7 C -0.076 4.076 8 C -0.121 4.121 9 C -0.223 4.223 10 C 0.023 3.977 11 O -0.114 6.114 12 C -0.496 4.496 13 H 0.124 0.876 14 C -0.215 4.215 15 N -0.548 5.548 16 Si 0.838 3.162 17 H -0.180 1.180 18 H -0.196 1.196 19 H -0.179 1.179 20 C -0.140 4.140 21 N -0.137 5.137 22 C -0.132 4.132 23 C -0.102 4.102 24 C -0.168 4.168 25 H 0.097 0.903 26 H 0.102 0.898 27 H 0.092 0.908 28 H 0.157 0.843 29 H 0.078 0.922 30 H 0.083 0.917 31 H 0.094 0.906 32 H 0.176 0.824 33 H 0.160 0.840 34 H 0.085 0.915 35 H 0.173 0.827 36 H 0.152 0.848 37 H 0.096 0.904 38 H 0.089 0.911 39 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -21.803 -3.554 0.649 22.100 hybrid contribution 1.722 -0.997 0.045 1.990 sum -20.081 -4.550 0.694 20.602 Atomic orbital electron populations 1.20901 0.88961 1.03869 1.03151 1.20182 0.97616 0.92092 0.99103 1.21090 0.92558 0.98783 1.02164 1.20194 0.94242 0.95044 0.98431 1.20925 0.99878 0.92662 1.02384 1.18446 0.89028 0.94318 1.03420 1.19793 0.93489 0.89039 1.05238 1.22035 0.93007 0.99487 0.97582 1.21675 0.95296 0.98231 1.07077 1.20950 0.85280 0.96060 0.95442 1.83950 1.13352 1.33951 1.80143 1.21857 0.90394 0.84307 1.53015 0.87633 1.26626 0.96199 1.03470 0.95224 1.70164 1.09022 1.28962 1.46666 0.84632 0.76767 0.74714 0.80064 1.18044 1.19631 1.17945 1.22032 0.88979 0.96883 1.06104 1.67881 1.07092 1.28135 1.10594 1.21218 0.94293 0.96851 1.00880 1.19945 0.92834 0.96488 1.00897 1.20881 1.00314 0.92517 1.03100 0.90271 0.89824 0.90810 0.84313 0.92195 0.91707 0.90588 0.82423 0.83972 0.91466 0.82669 0.84833 0.90413 0.91142 0.89607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.49 9.60 71.24 0.68 -0.81 16 2 C -0.09 -1.89 5.88 -19.82 -0.12 -2.00 16 3 C -0.13 -3.09 9.31 22.24 0.21 -2.89 16 4 C -0.08 -2.35 5.91 -19.64 -0.12 -2.47 16 5 C -0.10 -3.05 8.54 71.24 0.61 -2.44 16 6 C -0.05 -1.66 5.87 -20.04 -0.12 -1.78 16 7 C 0.06 2.26 6.65 41.98 0.28 2.54 16 8 C -0.10 -3.68 9.44 22.55 0.21 -3.47 16 9 C -0.20 -8.35 9.25 22.55 0.21 -8.14 16 10 C 0.08 3.76 6.67 22.73 0.15 3.91 16 11 O -0.21 -12.15 9.76 -22.23 -0.22 -12.37 16 12 C -0.42 -23.37 9.50 67.92 0.64 -22.73 16 13 H 0.11 5.29 5.25 -2.91 -0.02 5.28 16 14 C -0.02 -0.87 5.49 84.83 0.47 -0.40 16 15 N -0.91 -54.01 13.67 21.61 0.30 -53.72 16 16 Si 1.02 40.84 29.55 68.60 2.03 42.87 16 17 H -0.26 -9.63 7.11 99.48 0.71 -8.92 16 18 H -0.27 -10.53 7.11 99.48 0.71 -9.83 16 19 H -0.26 -9.56 7.11 99.48 0.71 -8.86 16 20 C 0.02 0.92 11.14 84.89 0.95 1.87 16 21 N -0.43 -17.36 6.24 -184.33 -1.15 -18.51 16 22 C -0.11 -3.02 9.06 22.49 0.20 -2.82 16 23 C -0.10 -2.23 5.87 -19.90 -0.12 -2.34 16 24 C -0.11 -1.62 9.60 71.24 0.68 -0.94 16 25 H 0.08 0.91 8.14 -2.39 -0.02 0.90 16 26 H 0.08 0.87 5.93 -2.39 -0.01 0.85 16 27 H 0.07 0.85 8.08 -2.39 -0.02 0.83 16 28 H 0.14 2.68 8.05 -2.91 -0.02 2.66 16 29 H 0.06 1.85 8.13 -2.38 -0.02 1.84 16 30 H 0.06 1.57 8.03 -2.39 -0.02 1.55 16 31 H 0.08 2.62 5.73 -2.39 -0.01 2.61 16 32 H 0.16 4.43 6.25 -2.91 -0.02 4.41 16 33 H 0.14 5.80 5.75 -2.91 -0.02 5.79 16 34 H 0.28 14.99 8.31 -92.71 -0.77 14.22 16 35 H 0.16 6.60 8.06 -2.91 -0.02 6.58 16 36 H 0.13 3.10 6.25 -2.91 -0.02 3.08 16 37 H 0.08 1.00 8.14 -2.38 -0.02 0.98 16 38 H 0.07 0.95 8.09 -2.39 -0.02 0.93 16 39 H 0.09 0.94 5.93 -2.39 -0.01 0.93 16 Total: -1.00 -67.68 322.44 6.86 -60.82 By element: Atomic # 1 Polarization: 24.75 SS G_CDS: 1.08 Total: 25.82 kcal Atomic # 6 Polarization: -49.74 SS G_CDS: 4.83 Total: -44.91 kcal Atomic # 7 Polarization: -71.38 SS G_CDS: -0.85 Total: -72.23 kcal Atomic # 8 Polarization: -12.15 SS G_CDS: -0.22 Total: -12.37 kcal Atomic # 14 Polarization: 40.84 SS G_CDS: 2.03 Total: 42.87 kcal Total: -67.68 6.86 -60.82 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241628608.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.308 kcal (2) G-P(sol) polarization free energy of solvation -67.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.824 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds