Wall clock time and date at job start Tue Mar 31 2020 06:04:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47175 * 2 1 4 4 C 1.50698 * 109.47092 * 180.02562 * 3 2 1 5 5 C 1.38336 * 119.86783 * 269.72227 * 4 3 2 6 6 C 1.38008 * 120.12251 * 179.72625 * 5 4 3 7 7 C 1.39395 * 119.87277 * 0.57182 * 6 5 4 8 8 C 1.48284 * 120.12742 * 179.68567 * 7 6 5 9 9 C 1.39423 * 119.65003 * 0.02562 * 8 7 6 10 10 C 1.38223 * 119.14972 * 180.02562 * 9 8 7 11 11 C 1.39425 * 118.45277 * 0.02562 * 10 9 8 12 12 O 1.35713 * 120.39103 * 180.02562 * 11 10 9 13 13 C 1.34811 * 116.99449 * 354.51357 * 12 11 10 14 14 H 1.07997 * 120.00414 * 5.06029 * 13 12 11 15 15 C 1.38659 * 119.99730 * 185.05431 * 13 12 11 16 16 N 1.31556 * 119.99909 * 179.97438 * 15 13 12 17 17 Si 1.86799 * 120.00060 * 0.02562 * 15 13 12 18 18 H 1.48503 * 109.47121 * 89.99635 * 17 15 13 19 19 H 1.48500 * 109.47146 * 209.99539 * 17 15 13 20 20 H 1.48502 * 109.47140 * 329.99752 * 17 15 13 21 21 C 1.38969 * 119.22637 * 359.97438 * 11 10 9 22 22 N 1.31661 * 120.78463 * 359.72793 * 21 11 10 23 23 C 1.39395 * 119.74608 * 359.70212 * 7 6 5 24 24 C 1.38001 * 119.87025 * 0.02562 * 23 7 6 25 25 H 1.09002 * 109.47564 * 59.99681 * 1 2 3 26 26 H 1.09001 * 109.46871 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47097 * 299.99558 * 1 2 3 28 28 H 1.08997 * 109.47343 * 239.99989 * 2 1 3 29 29 H 1.09002 * 109.47306 * 119.99833 * 2 1 3 30 30 H 1.09002 * 109.46867 * 300.00102 * 3 2 1 31 31 H 1.08997 * 109.46994 * 59.99776 * 3 2 1 32 32 H 1.07997 * 119.93928 * 0.02562 * 5 4 3 33 33 H 1.08001 * 120.06121 * 180.30169 * 6 5 4 34 34 H 1.08000 * 120.43196 * 359.97438 * 9 8 7 35 35 H 1.08003 * 120.77800 * 180.02562 * 10 9 8 36 36 H 0.97001 * 119.99926 * 180.02562 * 16 15 13 37 37 H 1.07997 * 119.60406 * 180.02562 * 21 11 10 38 38 H 1.08006 * 120.06353 * 180.02562 * 23 7 6 39 39 H 1.08008 * 119.93095 * 179.97438 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5469 1.4425 -0.0006 5 6 4.2364 1.4481 1.1987 6 6 5.6164 1.4424 1.2043 7 6 6.3156 1.4430 -0.0017 8 6 7.7984 1.4440 -0.0022 9 6 8.4887 1.4437 1.2092 10 6 9.8708 1.4451 1.1966 11 6 10.5239 1.4473 -0.0353 12 8 11.8798 1.4483 -0.0935 13 6 12.5424 1.5618 1.0750 14 1 11.9969 1.5644 2.0071 15 6 13.9243 1.6751 1.0801 16 7 14.5709 1.7864 2.2204 17 14 14.8678 1.6711 -0.5321 18 1 15.0037 3.0638 -1.0295 19 1 16.2167 1.0893 -0.3149 20 1 14.1330 0.8573 -1.5336 21 6 9.7702 1.4475 -1.2028 22 7 8.4544 1.4402 -1.1555 23 6 5.6155 1.4431 -1.2070 24 6 4.2355 1.4431 -1.2003 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.6766 1.9563 -0.8900 31 1 1.6766 1.9563 0.8899 32 1 3.6936 1.4521 2.1324 33 1 6.1536 1.4419 2.1412 34 1 7.9504 1.4432 2.1455 35 1 10.4319 1.4445 2.1194 36 1 15.5377 1.8660 2.2239 37 1 10.2697 1.4488 -2.1603 38 1 6.1521 1.4432 -2.1444 39 1 3.6921 1.4436 -2.1337 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241689067.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:39 Heat of formation + Delta-G solvation = 12.137555 kcal Electronic energy + Delta-G solvation = -20280.688061 eV Core-core repulsion = 17153.137433 eV Total energy + Delta-G solvation = -3127.550628 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.00999 -39.04323 -37.40037 -35.19305 -32.67512 -31.94455 -31.54859 -30.62919 -29.08267 -26.53970 -25.15996 -23.54445 -22.70118 -21.78275 -21.50983 -20.40471 -18.16802 -17.64215 -16.62316 -15.91208 -15.49261 -15.27109 -14.65093 -14.33397 -14.21213 -14.01302 -13.91496 -13.66743 -13.22218 -13.05846 -12.88026 -12.63852 -12.58172 -12.21133 -12.13343 -11.94353 -11.46079 -11.35135 -11.03966 -11.01742 -10.79969 -10.70570 -10.41423 -9.83742 -9.21874 -9.13844 -8.92746 -8.77792 -8.67983 -7.30470 -6.62356 -4.26904 1.05096 1.58780 1.90877 2.28183 3.11681 3.15761 3.29163 3.87960 4.07901 4.49211 4.56015 4.66414 4.72443 4.83386 4.90415 4.93782 4.99685 5.15171 5.23477 5.30163 5.40289 5.49440 5.55775 5.61689 5.64933 5.71051 5.77731 5.83381 5.94169 6.00592 6.07424 6.12326 6.23214 6.37660 6.48856 6.71626 6.72750 6.85604 6.94929 7.14061 7.22236 7.54395 7.78053 8.58702 8.70799 9.28368 10.43902 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.052362 B = 0.002738 C = 0.002636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 534.608394 B =10225.619556 C =10619.943357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.120 4.120 3 C -0.077 4.077 4 C -0.097 4.097 5 C -0.117 4.117 6 C -0.117 4.117 7 C -0.010 4.010 8 C 0.050 3.950 9 C -0.103 4.103 10 C -0.188 4.188 11 C 0.113 3.887 12 O -0.198 6.198 13 C -0.392 4.392 14 H 0.108 0.892 15 C 0.066 3.934 16 N -0.867 5.867 17 Si 0.908 3.092 18 H -0.271 1.271 19 H -0.280 1.280 20 H -0.257 1.257 21 C 0.034 3.966 22 N -0.434 5.434 23 C -0.096 4.096 24 C -0.119 4.119 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.118 0.882 33 H 0.123 0.877 34 H 0.124 0.876 35 H 0.144 0.856 36 H 0.283 0.717 37 H 0.153 0.847 38 H 0.131 0.869 39 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.697 -1.325 -3.239 20.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.157 4.157 3 C -0.115 4.115 4 C -0.097 4.097 5 C -0.135 4.135 6 C -0.136 4.136 7 C -0.011 4.011 8 C -0.085 4.085 9 C -0.122 4.122 10 C -0.214 4.214 11 C 0.057 3.943 12 O -0.100 6.100 13 C -0.468 4.468 14 H 0.126 0.874 15 C -0.139 4.139 16 N -0.503 5.503 17 Si 0.732 3.268 18 H -0.196 1.196 19 H -0.205 1.205 20 H -0.181 1.181 21 C -0.129 4.129 22 N -0.143 5.143 23 C -0.114 4.114 24 C -0.137 4.137 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.136 0.864 33 H 0.141 0.859 34 H 0.142 0.858 35 H 0.162 0.838 36 H 0.094 0.906 37 H 0.170 0.830 38 H 0.149 0.851 39 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -20.737 -1.329 -4.052 21.171 hybrid contribution 1.169 0.030 0.516 1.278 sum -19.569 -1.298 -3.535 19.928 Atomic orbital electron populations 1.21794 0.95914 1.01574 1.01721 1.21521 0.95369 0.96361 1.02478 1.20590 0.91250 0.97095 1.02522 1.19841 0.95275 1.01312 0.93293 1.20833 0.93772 1.01590 0.97293 1.21176 0.93988 1.00987 0.97433 1.18502 0.90499 0.98841 0.93259 1.19168 0.92018 1.08452 0.88860 1.21759 0.94015 0.98309 0.98155 1.21599 0.94199 1.06734 0.98893 1.20303 0.84592 0.94905 0.94524 1.83555 1.13415 1.78324 1.34753 1.20820 0.90697 1.51768 0.83471 0.87442 1.24530 0.95540 0.95064 0.98779 1.69637 1.09731 1.45447 1.25457 0.86142 0.78722 0.79467 0.82440 1.19581 1.20498 1.18078 1.21760 0.88222 1.06436 0.96477 1.67335 1.08465 1.09797 1.28697 1.21263 0.93420 0.98441 0.98308 1.20936 0.94074 1.01501 0.97230 0.92779 0.92793 0.92790 0.91850 0.91863 0.91308 0.91313 0.86387 0.85896 0.85782 0.83828 0.90633 0.82965 0.85075 0.86451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.91 37.16 0.37 -0.64 16 2 C -0.12 -0.96 5.92 -26.73 -0.16 -1.12 16 3 C -0.08 -0.67 5.34 -27.88 -0.15 -0.82 16 4 C -0.10 -1.11 5.14 -104.55 -0.54 -1.64 16 5 C -0.12 -1.39 9.68 -39.63 -0.38 -1.77 16 6 C -0.12 -1.60 9.42 -39.24 -0.37 -1.97 16 7 C -0.01 -0.16 5.88 -104.90 -0.62 -0.78 16 8 C 0.05 0.92 6.73 -82.93 -0.56 0.36 16 9 C -0.10 -1.86 9.45 -39.15 -0.37 -2.23 16 10 C -0.19 -3.91 9.25 -39.15 -0.36 -4.28 16 11 C 0.11 2.52 6.67 -38.87 -0.26 2.26 16 12 O -0.20 -4.96 8.59 0.22 0.00 -4.96 16 13 C -0.39 -10.50 9.95 30.89 0.31 -10.19 16 14 H 0.11 2.92 5.48 -52.49 -0.29 2.64 16 15 C 0.07 1.77 5.49 -17.51 -0.10 1.68 16 16 N -0.87 -23.88 13.96 55.48 0.77 -23.11 16 17 Si 0.91 20.60 28.62 -169.99 -4.86 15.73 16 18 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 19 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 20 H -0.26 -5.83 7.11 56.52 0.40 -5.43 16 21 C 0.03 0.69 11.14 -17.35 -0.19 0.50 16 22 N -0.43 -8.49 9.42 -9.61 -0.09 -8.58 16 23 C -0.10 -1.41 9.57 -39.24 -0.38 -1.79 16 24 C -0.12 -1.48 9.68 -39.64 -0.38 -1.86 16 25 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.07 0.55 8.08 -51.93 -0.42 0.13 16 31 H 0.07 0.54 8.08 -51.93 -0.42 0.12 16 32 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 33 H 0.12 1.51 6.18 -52.49 -0.32 1.19 16 34 H 0.12 1.86 6.18 -52.49 -0.32 1.54 16 35 H 0.14 3.03 5.75 -52.48 -0.30 2.73 16 36 H 0.28 7.18 8.31 -40.82 -0.34 6.85 16 37 H 0.15 2.75 8.06 -52.49 -0.42 2.32 16 38 H 0.13 1.97 7.53 -52.48 -0.40 1.57 16 39 H 0.12 1.20 8.06 -52.48 -0.42 0.77 16 LS Contribution 331.62 15.07 5.00 5.00 Total: -1.00 -28.20 331.62 -8.31 -36.50 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: -4.99 Total: 3.72 kcal Atomic # 6 Polarization: -20.16 SS G_CDS: -4.14 Total: -24.30 kcal Atomic # 7 Polarization: -32.38 SS G_CDS: 0.68 Total: -31.69 kcal Atomic # 8 Polarization: -4.96 SS G_CDS: 0.00 Total: -4.96 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -4.86 Total: 15.73 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -28.20 -8.31 -36.50 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241689067.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.641 kcal (2) G-P(sol) polarization free energy of solvation -28.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.504 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds