Wall clock time and date at job start Tue Mar 31 2020 06:04:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47358 * 2 1 4 4 C 1.50699 * 109.47265 * 120.00099 * 2 1 3 5 5 C 1.38352 * 119.93541 * 299.99595 * 4 2 1 6 6 C 1.38316 * 120.25605 * 180.02562 * 5 4 2 7 7 C 1.38018 * 120.12582 * 359.97438 * 6 5 4 8 8 C 1.39379 * 119.87192 * 359.97438 * 7 6 5 9 9 C 1.48290 * 120.12646 * 179.97438 * 8 7 6 10 10 C 1.39428 * 119.65008 * 4.97256 * 9 8 7 11 11 C 1.38223 * 119.14465 * 179.76942 * 10 9 8 12 12 C 1.39423 * 118.45367 * 0.52089 * 11 10 9 13 13 O 1.35709 * 120.38783 * 179.73444 * 12 11 10 14 14 C 1.34812 * 116.99834 * 5.18644 * 13 12 11 15 15 H 1.08000 * 119.99990 * 354.92006 * 14 13 12 16 16 C 1.38655 * 119.99857 * 174.92905 * 14 13 12 17 17 N 1.31552 * 120.00313 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 119.99811 * 179.72287 * 16 14 13 19 19 H 1.48495 * 109.47446 * 270.27160 * 18 16 14 20 20 H 1.48501 * 109.47361 * 30.27287 * 18 16 14 21 21 H 1.48507 * 109.47027 * 150.27084 * 18 16 14 22 22 C 1.38965 * 119.22852 * 359.45722 * 12 11 10 23 23 N 1.31660 * 120.78473 * 0.30022 * 22 12 11 24 24 C 1.37980 * 119.93569 * 120.23696 * 4 2 1 25 25 H 1.09009 * 109.46604 * 300.00148 * 1 2 3 26 26 H 1.09001 * 109.47168 * 59.99824 * 1 2 3 27 27 H 1.08998 * 109.46895 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47017 * 240.00179 * 2 1 3 29 29 H 1.08994 * 109.47353 * 180.02562 * 3 2 1 30 30 H 1.09003 * 109.46673 * 300.00477 * 3 2 1 31 31 H 1.08996 * 109.47228 * 59.99692 * 3 2 1 32 32 H 1.08002 * 119.87521 * 0.02562 * 5 4 2 33 33 H 1.07994 * 119.93613 * 179.97438 * 6 5 4 34 34 H 1.08001 * 120.06615 * 179.97438 * 7 6 5 35 35 H 1.07991 * 120.42674 * 0.04878 * 10 9 8 36 36 H 1.08000 * 120.77338 * 180.25725 * 11 10 9 37 37 H 0.97000 * 119.99792 * 359.72572 * 17 16 14 38 38 H 1.07997 * 119.60970 * 180.27141 * 22 12 11 39 39 H 1.07993 * 120.06710 * 359.97438 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 6 1.6974 -0.2366 2.4864 6 6 2.1552 -0.8831 3.6201 7 6 2.9492 -2.0061 3.5042 8 6 3.2890 -2.4887 2.2415 9 6 4.1422 -3.6944 2.1104 10 6 4.5161 -4.4023 3.2519 11 6 5.3076 -5.5274 3.1172 12 6 5.7122 -5.9057 1.8376 13 8 6.4942 -7.0005 1.6605 14 6 6.7600 -7.7458 2.7520 15 1 6.4249 -7.4175 3.7248 16 6 7.4636 -8.9339 2.6257 17 7 7.8715 -9.3341 1.4407 18 14 7.8386 -9.9627 4.1391 19 1 9.1381 -9.5367 4.7177 20 1 6.7629 -9.7736 5.1452 21 1 7.9128 -11.3960 3.7573 22 6 5.3005 -5.1518 0.7452 23 7 4.5422 -4.0879 0.9080 24 6 2.8296 -1.8293 1.1023 25 1 -0.3633 0.5139 0.8901 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 3.1300 1.4425 -0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6767 1.9564 0.8899 32 1 1.0760 0.6416 2.5819 33 1 1.8910 -0.5085 4.5980 34 1 3.3066 -2.5099 4.3901 35 1 4.1878 -4.0783 4.2284 36 1 5.6093 -6.0978 3.9832 37 1 7.6765 -8.8000 0.6548 38 1 5.6066 -5.4417 -0.2490 39 1 3.0933 -2.1963 0.1214 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241737215.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:41 Heat of formation + Delta-G solvation = 7.075804 kcal Electronic energy + Delta-G solvation = -20635.724351 eV Core-core repulsion = 17507.954229 eV Total energy + Delta-G solvation = -3127.770122 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.00901 -39.12652 -37.39278 -35.36285 -32.65992 -31.67714 -31.42362 -29.88261 -28.11322 -27.26465 -25.31506 -23.72654 -23.19274 -22.08159 -21.41103 -19.63969 -18.57030 -17.35669 -16.53972 -16.00917 -15.59959 -15.07781 -14.55138 -14.27163 -14.03747 -13.85824 -13.79087 -13.65971 -13.60545 -13.24378 -12.84808 -12.63557 -12.41145 -12.02727 -11.89282 -11.86124 -11.24479 -11.20074 -11.01561 -10.74970 -10.65064 -10.61506 -10.42826 -9.98018 -9.22096 -9.13826 -8.87301 -8.69527 -8.57896 -7.28806 -7.00130 -4.26608 1.10120 1.57277 1.93246 2.33046 3.13409 3.19349 3.32624 3.90521 3.94022 4.59051 4.59983 4.64777 4.75920 4.91951 5.01055 5.10548 5.11201 5.20536 5.32854 5.40688 5.44337 5.47655 5.63244 5.64798 5.68147 5.74825 5.81418 5.91361 5.97548 6.08221 6.11747 6.17234 6.26117 6.41694 6.54722 6.65677 6.78837 6.87005 6.94326 7.16590 7.25861 7.34756 8.14727 8.60056 8.67961 9.30884 10.43414 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.038135 B = 0.003062 C = 0.002893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.063791 B = 9142.032576 C = 9675.581160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.057 4.057 3 C -0.142 4.142 4 C -0.080 4.080 5 C -0.128 4.128 6 C -0.118 4.118 7 C -0.126 4.126 8 C -0.001 4.001 9 C 0.041 3.959 10 C -0.100 4.100 11 C -0.198 4.198 12 C 0.110 3.890 13 O -0.184 6.184 14 C -0.472 4.472 15 H 0.087 0.913 16 C 0.014 3.986 17 N -0.868 5.868 18 Si 1.099 2.901 19 H -0.278 1.278 20 H -0.281 1.281 21 H -0.273 1.273 22 C 0.032 3.968 23 N -0.431 5.431 24 C -0.097 4.097 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.056 0.944 28 H 0.077 0.923 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.115 0.885 33 H 0.118 0.882 34 H 0.121 0.879 35 H 0.123 0.877 36 H 0.139 0.861 37 H 0.285 0.715 38 H 0.151 0.849 39 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.061 15.672 2.172 19.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.075 4.075 3 C -0.200 4.200 4 C -0.080 4.080 5 C -0.146 4.146 6 C -0.136 4.136 7 C -0.145 4.145 8 C -0.002 4.002 9 C -0.094 4.094 10 C -0.119 4.119 11 C -0.224 4.224 12 C 0.052 3.948 13 O -0.085 6.085 14 C -0.547 4.547 15 H 0.105 0.895 16 C -0.193 4.193 17 N -0.498 5.498 18 Si 0.923 3.077 19 H -0.204 1.204 20 H -0.206 1.206 21 H -0.198 1.198 22 C -0.132 4.132 23 N -0.140 5.140 24 C -0.115 4.115 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.096 0.904 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.133 0.867 33 H 0.136 0.864 34 H 0.139 0.861 35 H 0.141 0.859 36 H 0.157 0.843 37 H 0.096 0.904 38 H 0.169 0.831 39 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -10.420 14.570 1.749 17.998 hybrid contribution -0.443 0.906 0.461 1.109 sum -10.863 15.476 2.210 19.037 Atomic orbital electron populations 1.21845 0.94549 1.02008 1.01569 1.20113 0.95756 0.95912 0.95760 1.21844 1.01348 0.95210 1.01565 1.19761 0.97924 0.95807 0.94495 1.20876 1.01431 1.00311 0.92028 1.20930 0.98455 0.95957 0.98227 1.21157 0.99547 0.97124 0.96661 1.18490 0.95564 0.93088 0.93068 1.19122 1.03560 0.97706 0.88971 1.21723 0.96912 0.94670 0.98639 1.21484 1.03543 0.99462 0.97929 1.20393 0.90819 0.89368 0.94187 1.83641 1.56129 1.31669 1.37033 1.22357 1.40747 1.05273 0.86337 0.89512 1.26679 0.93756 0.94358 1.04535 1.70547 1.39859 1.39899 0.99472 0.83044 0.76911 0.76089 0.71702 1.20438 1.20620 1.19788 1.21728 1.00586 0.93420 0.97471 1.67319 1.08850 1.12660 1.25161 1.21171 0.96858 0.94523 0.98981 0.92604 0.92608 0.92505 0.90413 0.92499 0.92617 0.92603 0.86708 0.86363 0.86075 0.85935 0.84326 0.90424 0.83125 0.85204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.27 9.01 37.16 0.33 -0.94 16 2 C -0.06 -0.59 3.09 -91.77 -0.28 -0.87 16 3 C -0.14 -1.27 9.01 37.16 0.33 -0.94 16 4 C -0.08 -1.02 4.78 -104.67 -0.50 -1.52 16 5 C -0.13 -1.50 8.71 -39.51 -0.34 -1.85 16 6 C -0.12 -1.42 10.03 -39.63 -0.40 -1.82 16 7 C -0.13 -1.78 9.41 -39.24 -0.37 -2.14 16 8 C 0.00 -0.02 5.87 -104.90 -0.62 -0.64 16 9 C 0.04 0.78 6.72 -82.92 -0.56 0.22 16 10 C -0.10 -1.86 9.45 -39.14 -0.37 -2.23 16 11 C -0.20 -4.22 9.25 -39.15 -0.36 -4.58 16 12 C 0.11 2.57 6.67 -38.87 -0.26 2.31 16 13 O -0.18 -4.92 9.17 0.23 0.00 -4.92 16 14 C -0.47 -12.62 9.50 30.89 0.29 -12.32 16 15 H 0.09 2.17 5.25 -52.49 -0.28 1.89 16 16 C 0.01 0.37 5.49 -17.52 -0.10 0.28 16 17 N -0.87 -24.76 13.70 55.48 0.76 -24.00 16 18 Si 1.10 22.52 29.92 -169.99 -5.09 17.44 16 19 H -0.28 -5.44 7.11 56.52 0.40 -5.04 16 20 H -0.28 -5.35 7.11 56.52 0.40 -4.95 16 21 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 22 C 0.03 0.68 11.14 -17.36 -0.19 0.49 16 23 N -0.43 -8.83 9.43 -9.61 -0.09 -8.92 16 24 C -0.10 -1.49 9.19 -39.24 -0.36 -1.85 16 25 H 0.05 0.46 7.38 -51.92 -0.38 0.08 16 26 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.08 0.82 7.87 -51.93 -0.41 0.41 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.05 0.46 7.38 -51.93 -0.38 0.08 16 32 H 0.11 1.09 7.08 -52.49 -0.37 0.72 16 33 H 0.12 1.12 8.06 -52.49 -0.42 0.69 16 34 H 0.12 1.53 6.21 -52.49 -0.33 1.20 16 35 H 0.12 1.88 6.21 -52.49 -0.33 1.55 16 36 H 0.14 2.88 5.75 -52.49 -0.30 2.58 16 37 H 0.29 8.30 7.97 -40.82 -0.33 7.97 16 38 H 0.15 2.97 8.06 -52.49 -0.42 2.54 16 39 H 0.13 2.07 7.43 -52.49 -0.39 1.68 16 LS Contribution 328.06 15.07 4.94 4.94 Total: -1.00 -29.31 328.06 -8.04 -37.35 By element: Atomic # 1 Polarization: 11.34 SS G_CDS: -4.82 Total: 6.52 kcal Atomic # 6 Polarization: -24.65 SS G_CDS: -3.75 Total: -28.40 kcal Atomic # 7 Polarization: -33.60 SS G_CDS: 0.67 Total: -32.93 kcal Atomic # 8 Polarization: -4.92 SS G_CDS: 0.00 Total: -4.92 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.09 Total: 17.44 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -29.31 -8.04 -37.35 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241737215.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.426 kcal (2) G-P(sol) polarization free energy of solvation -29.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.351 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds