Wall clock time and date at job start Tue Mar 31 2020 05:55:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35659 * 117.00048 * 2 1 4 4 C 1.39007 * 119.55233 * 180.02562 * 3 2 1 5 5 C 1.38149 * 119.23491 * 179.74647 * 4 3 2 6 6 C 1.50708 * 120.81004 * 180.25171 * 5 4 3 7 7 C 1.39913 * 118.38023 * 0.48798 * 5 4 3 8 8 C 1.48376 * 120.47762 * 179.75722 * 7 5 4 9 9 C 1.39366 * 120.12036 * 309.70985 * 8 7 5 10 10 C 1.37996 * 119.87518 * 180.02562 * 9 8 7 11 11 C 1.38346 * 120.12242 * 359.72503 * 10 9 8 12 12 C 1.38300 * 120.24267 * 0.55183 * 11 10 9 13 13 C 1.50700 * 119.93724 * 179.72771 * 12 11 10 14 14 C 1.50706 * 109.47062 * 269.71772 * 13 12 11 15 15 H 1.07998 * 119.99503 * 0.02562 * 14 13 12 16 16 C 1.37871 * 120.00434 * 179.97438 * 14 13 12 17 17 N 1.31516 * 119.99826 * 359.72891 * 16 14 13 18 18 Si 1.86800 * 120.00406 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47364 * 179.72558 * 18 16 14 20 20 H 1.48508 * 109.46883 * 299.72681 * 18 16 14 21 21 H 1.48497 * 109.46870 * 59.72491 * 18 16 14 22 22 C 1.38044 * 120.12371 * 359.44638 * 12 11 10 23 23 C 1.39186 * 119.04999 * 359.48821 * 7 5 4 24 24 N 1.31815 * 120.66429 * 0.27265 * 23 7 5 25 25 H 1.08995 * 109.47071 * 59.99873 * 1 2 3 26 26 H 1.08997 * 109.47152 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47003 * 299.99955 * 1 2 3 28 28 H 1.08006 * 120.38515 * 359.97438 * 4 3 2 29 29 H 1.08996 * 109.46727 * 270.24261 * 6 5 4 30 30 H 1.09000 * 109.47040 * 30.24883 * 6 5 4 31 31 H 1.09001 * 109.46595 * 150.24312 * 6 5 4 32 32 H 1.07999 * 120.06336 * 0.03922 * 9 8 7 33 33 H 1.08001 * 119.93719 * 180.02562 * 10 9 8 34 34 H 1.07998 * 119.87717 * 180.26766 * 11 10 9 35 35 H 1.09004 * 109.47406 * 149.72478 * 13 12 11 36 36 H 1.08993 * 109.47274 * 29.72105 * 13 12 11 37 37 H 0.97000 * 120.00236 * 0.27947 * 17 16 14 38 38 H 1.08000 * 120.05947 * 180.30075 * 22 12 11 39 39 H 1.08000 * 119.66589 * 180.28842 * 23 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2087 0.0000 4 6 3.4336 1.2706 -0.0005 5 6 4.0540 2.5050 -0.0059 6 6 5.5571 2.6134 -0.0123 7 6 3.2528 3.6520 -0.0001 8 6 3.8701 5.0012 0.0000 9 6 4.8655 5.3148 0.9237 10 6 5.4358 6.5714 0.9196 11 6 5.0253 7.5172 -0.0029 12 6 4.0339 7.2132 -0.9181 13 6 3.5877 8.2506 -1.9158 14 6 2.4488 9.0488 -1.3353 15 1 2.0849 8.8272 -0.3429 16 6 1.8722 10.0626 -2.0706 17 7 2.3195 10.3366 -3.2766 18 14 0.4609 11.0523 -1.3507 19 1 0.0259 12.0794 -2.3311 20 1 -0.6752 10.1455 -1.0466 21 1 0.9102 11.7188 -0.1021 22 6 3.4565 5.9593 -0.9230 23 6 1.8683 3.5093 -0.0001 24 7 1.3158 2.3125 0.0000 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 4.0209 0.3642 -0.0005 29 1 5.9240 2.6375 1.0138 30 1 5.9813 1.7530 -0.5298 31 1 5.8531 3.5283 -0.5257 32 1 5.1900 4.5758 1.6412 33 1 6.2075 6.8154 1.6347 34 1 5.4774 8.4980 -0.0053 35 1 3.2567 7.7572 -2.8297 36 1 4.4195 8.9171 -2.1436 37 1 3.0525 9.8228 -3.6504 38 1 2.6859 5.7215 -1.6413 39 1 1.2403 4.3880 -0.0003 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241761804.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:30 Heat of formation + Delta-G solvation = -17.140870 kcal Electronic energy + Delta-G solvation = -20949.722710 eV Core-core repulsion = 17820.902474 eV Total energy + Delta-G solvation = -3128.820236 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.83792 -40.25908 -38.85220 -35.99016 -35.00039 -33.39312 -32.68618 -30.43711 -28.89367 -28.55190 -27.71650 -25.25693 -24.97121 -23.02544 -22.71642 -21.54339 -19.00942 -18.89335 -18.16898 -17.57303 -17.05292 -16.70799 -16.09358 -15.69498 -15.55021 -15.50700 -15.23193 -14.86990 -14.68541 -14.07090 -13.88797 -13.73200 -13.69583 -13.44580 -13.22190 -12.96816 -12.85844 -12.69590 -12.50433 -12.18072 -11.96912 -11.94933 -11.62051 -11.01722 -10.78057 -10.59715 -10.56899 -9.99043 -9.55060 -9.07551 -8.68084 -6.43313 -0.18727 0.13271 0.57676 0.67826 1.51054 1.58953 1.78828 2.07695 2.52927 2.62040 2.94975 3.11811 3.24307 3.57043 3.74831 3.98821 4.02804 4.12645 4.18336 4.28547 4.39751 4.42071 4.47647 4.57296 4.65111 4.70621 4.74639 4.75796 4.81200 4.94448 4.99625 5.07315 5.18522 5.20886 5.34694 5.40916 5.59771 5.62898 5.89064 5.95010 6.11845 6.13293 6.17450 6.52657 6.75745 7.36982 8.68204 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.017316 B = 0.004109 C = 0.003506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1616.570749 B = 6812.557793 C = 7984.590552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.315 6.315 3 C 0.303 3.697 4 C -0.189 4.189 5 C 0.007 3.993 6 C -0.117 4.117 7 C -0.137 4.137 8 C -0.036 4.036 9 C -0.115 4.115 10 C -0.106 4.106 11 C -0.134 4.134 12 C -0.059 4.059 13 C 0.041 3.959 14 C -0.603 4.603 15 H 0.046 0.954 16 C -0.034 4.034 17 N -0.935 5.935 18 Si 1.116 2.884 19 H -0.281 1.281 20 H -0.271 1.271 21 H -0.268 1.268 22 C -0.123 4.123 23 C 0.142 3.858 24 N -0.558 5.558 25 H 0.051 0.949 26 H 0.127 0.873 27 H 0.054 0.946 28 H 0.169 0.831 29 H 0.103 0.897 30 H 0.093 0.907 31 H 0.069 0.931 32 H 0.151 0.849 33 H 0.155 0.845 34 H 0.113 0.887 35 H -0.005 1.005 36 H 0.001 0.999 37 H 0.256 0.744 38 H 0.100 0.900 39 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.442 -20.160 10.315 23.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.223 6.223 3 C 0.124 3.876 4 C -0.209 4.209 5 C 0.000 4.000 6 C -0.173 4.173 7 C -0.139 4.139 8 C -0.037 4.037 9 C -0.133 4.133 10 C -0.124 4.124 11 C -0.152 4.152 12 C -0.059 4.059 13 C 0.004 3.996 14 C -0.641 4.641 15 H 0.065 0.935 16 C -0.232 4.232 17 N -0.572 5.572 18 Si 0.937 3.063 19 H -0.206 1.206 20 H -0.196 1.196 21 H -0.193 1.193 22 C -0.142 4.142 23 C -0.014 4.014 24 N -0.282 5.282 25 H 0.069 0.931 26 H 0.145 0.855 27 H 0.073 0.927 28 H 0.186 0.814 29 H 0.121 0.879 30 H 0.111 0.889 31 H 0.088 0.912 32 H 0.169 0.831 33 H 0.173 0.827 34 H 0.131 0.869 35 H 0.013 0.987 36 H 0.019 0.981 37 H 0.065 0.935 38 H 0.118 0.882 39 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 2.596 -19.306 9.995 21.895 hybrid contribution 1.280 -0.566 -0.366 1.447 sum 3.877 -19.873 9.628 22.420 Atomic orbital electron populations 1.23044 0.76040 1.04695 1.02025 1.86203 1.24176 1.24070 1.87808 1.20214 0.90196 0.84759 0.92416 1.21115 0.91360 0.99686 1.08715 1.20453 0.98138 0.90200 0.91214 1.21027 0.87494 1.04193 1.04604 1.19571 0.93945 0.93136 1.07285 1.18471 0.97424 0.91363 0.96463 1.21333 0.96163 0.97262 0.98535 1.21318 1.00245 0.92752 0.98091 1.21203 0.97715 0.99983 0.96285 1.20074 0.94832 0.94079 0.96912 1.18269 0.95497 0.92672 0.93180 1.22222 1.18839 1.19524 1.03531 0.93525 1.27416 1.03385 0.97670 0.94707 1.70917 1.27402 1.41962 1.16950 0.82951 0.72822 0.75196 0.75334 1.20619 1.19607 1.19273 1.20981 1.00302 0.93002 0.99874 1.22580 0.92468 0.93544 0.92764 1.67246 1.41333 0.98957 1.20626 0.93061 0.85512 0.92705 0.81368 0.87899 0.88875 0.91228 0.83105 0.82727 0.86902 0.98709 0.98086 0.93464 0.88158 0.82772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.66 10.38 113.37 1.18 1.84 16 2 O -0.32 -7.34 10.47 -89.75 -0.94 -8.28 16 3 C 0.30 7.93 7.49 84.81 0.64 8.57 16 4 C -0.19 -4.12 9.73 22.43 0.22 -3.91 16 5 C 0.01 0.16 5.91 -19.48 -0.12 0.05 16 6 C -0.12 -1.88 8.54 71.24 0.61 -1.27 16 7 C -0.14 -3.88 5.48 -19.94 -0.11 -3.99 16 8 C -0.04 -1.15 4.78 -20.04 -0.10 -1.24 16 9 C -0.12 -3.03 8.00 22.48 0.18 -2.85 16 10 C -0.11 -2.99 10.03 22.24 0.22 -2.77 16 11 C -0.13 -5.00 9.69 22.31 0.22 -4.78 16 12 C -0.06 -2.60 5.06 -19.90 -0.10 -2.70 16 13 C 0.04 2.19 4.41 29.10 0.13 2.32 16 14 C -0.60 -35.13 9.09 25.60 0.23 -34.90 16 15 H 0.05 2.69 7.74 -2.91 -0.02 2.67 16 16 C -0.03 -2.00 5.46 84.65 0.46 -1.54 16 17 N -0.94 -58.48 13.65 21.45 0.29 -58.19 16 18 Si 1.12 50.91 29.90 68.60 2.05 52.96 16 19 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 20 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 21 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 22 C -0.12 -4.89 9.17 22.48 0.21 -4.68 16 23 C 0.14 4.30 10.68 84.92 0.91 5.21 16 24 N -0.56 -16.51 9.19 -308.06 -2.83 -19.34 16 25 H 0.05 1.00 8.10 -2.39 -0.02 0.98 16 26 H 0.13 1.39 8.14 -2.39 -0.02 1.38 16 27 H 0.05 1.03 8.10 -2.38 -0.02 1.01 16 28 H 0.17 2.65 8.06 -2.91 -0.02 2.62 16 29 H 0.10 1.21 7.61 -2.39 -0.02 1.19 16 30 H 0.09 1.11 8.10 -2.39 -0.02 1.09 16 31 H 0.07 1.34 6.59 -2.39 -0.02 1.32 16 32 H 0.15 2.89 6.98 -2.91 -0.02 2.87 16 33 H 0.16 3.15 8.06 -2.91 -0.02 3.13 16 34 H 0.11 4.21 8.06 -2.91 -0.02 4.19 16 35 H -0.01 -0.30 7.96 -2.39 -0.02 -0.32 16 36 H 0.00 0.05 7.94 -2.39 -0.02 0.03 16 37 H 0.26 16.19 7.22 -92.71 -0.67 15.52 16 38 H 0.10 4.19 8.05 -2.91 -0.02 4.16 16 39 H 0.16 4.77 8.04 -2.91 -0.02 4.74 16 Total: -1.00 -70.85 333.20 4.49 -66.36 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: 1.14 Total: 13.14 kcal Atomic # 6 Polarization: -51.42 SS G_CDS: 4.77 Total: -46.65 kcal Atomic # 7 Polarization: -74.99 SS G_CDS: -2.54 Total: -77.53 kcal Atomic # 8 Polarization: -7.34 SS G_CDS: -0.94 Total: -8.28 kcal Atomic # 14 Polarization: 50.91 SS G_CDS: 2.05 Total: 52.96 kcal Total: -70.85 4.49 -66.36 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241761804.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.221 kcal (2) G-P(sol) polarization free energy of solvation -70.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds