Wall clock time and date at job start Tue Mar 31 2020 05:55:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35658 * 116.99981 * 2 1 4 4 C 1.39008 * 119.55282 * 179.97438 * 3 2 1 5 5 C 1.38153 * 119.23510 * 179.97438 * 4 3 2 6 6 C 1.50697 * 120.81280 * 180.02562 * 5 4 3 7 7 C 1.39917 * 118.37714 * 0.02562 * 5 4 3 8 8 C 1.48377 * 120.47423 * 179.97438 * 7 5 4 9 9 C 1.39347 * 120.12276 * 129.99899 * 8 7 5 10 10 C 1.38017 * 119.87628 * 179.97438 * 9 8 7 11 11 C 1.38325 * 120.12186 * 0.27929 * 10 9 8 12 12 C 1.50694 * 119.87545 * 179.72078 * 11 10 9 13 13 C 1.50699 * 109.47113 * 89.99926 * 12 11 10 14 14 H 1.08002 * 120.00071 * 0.02562 * 13 12 11 15 15 C 1.37879 * 120.00208 * 180.02562 * 13 12 11 16 16 N 1.31514 * 119.99816 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 120.00180 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47160 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.47193 * 119.99791 * 17 15 13 20 20 H 1.48499 * 109.47203 * 239.99717 * 17 15 13 21 21 C 1.38321 * 120.24448 * 359.44562 * 11 10 9 22 22 C 1.38018 * 120.12480 * 0.55021 * 21 11 10 23 23 C 1.39179 * 119.05431 * 0.25427 * 7 5 4 24 24 N 1.31817 * 120.66200 * 359.46939 * 23 7 5 25 25 H 1.09006 * 109.47356 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47505 * 300.00011 * 1 2 3 27 27 H 1.09004 * 109.47082 * 60.00458 * 1 2 3 28 28 H 1.07994 * 120.38502 * 0.02562 * 4 3 2 29 29 H 1.08994 * 109.47099 * 269.98145 * 6 5 4 30 30 H 1.09007 * 109.46993 * 29.97771 * 6 5 4 31 31 H 1.08994 * 109.47345 * 149.97924 * 6 5 4 32 32 H 1.08000 * 120.06140 * 359.95841 * 9 8 7 33 33 H 1.08002 * 119.93521 * 179.97438 * 10 9 8 34 34 H 1.09006 * 109.47258 * 210.00316 * 12 11 10 35 35 H 1.09002 * 109.47505 * 329.99915 * 12 11 10 36 36 H 0.96996 * 120.00262 * 180.02562 * 16 15 13 37 37 H 1.08005 * 119.93982 * 180.25727 * 21 11 10 38 38 H 1.07993 * 120.06763 * 179.74405 * 22 21 11 39 39 H 1.08000 * 119.66850 * 179.74689 * 23 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2087 0.0000 4 6 3.4335 1.2706 0.0005 5 6 4.0539 2.5051 0.0000 6 6 5.5570 2.6136 0.0000 7 6 3.2526 3.6520 -0.0005 8 6 3.8699 5.0013 -0.0006 9 6 3.4567 5.9593 -0.9242 10 6 4.0340 7.2130 -0.9193 11 6 5.0250 7.5173 -0.0036 12 6 5.6560 8.8857 -0.0073 13 6 4.8803 9.7990 0.9066 14 1 4.0170 9.4257 1.4374 15 6 5.2727 11.1113 1.0652 16 7 6.3242 11.5658 0.4192 17 14 4.3116 12.2431 2.1986 18 1 3.1813 11.4940 2.8040 19 1 5.2059 12.7428 3.2737 20 1 3.7840 13.3921 1.4197 21 6 5.4351 6.5719 0.9192 22 6 4.8646 5.3151 0.9235 23 6 1.8681 3.5093 0.0049 24 7 1.3157 2.3125 0.0000 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8901 28 1 4.0207 0.3643 0.0005 29 1 5.9193 2.6406 1.0276 30 1 5.9835 1.7516 -0.5131 31 1 5.8553 3.5270 -0.5145 32 1 2.6863 5.7213 -1.6427 33 1 3.7148 7.9561 -1.6351 34 1 6.6861 8.8119 0.3415 35 1 5.6434 9.2890 -1.0200 36 1 6.6005 12.4888 0.5309 37 1 6.2064 6.8162 1.6347 38 1 5.1884 4.5765 1.6417 39 1 1.2401 4.3879 0.0087 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241762168.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:33 Heat of formation + Delta-G solvation = 4.166355 kcal Electronic energy + Delta-G solvation = -20688.377844 eV Core-core repulsion = 17560.481559 eV Total energy + Delta-G solvation = -3127.896285 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.80111 -38.95198 -37.75640 -34.29694 -33.42314 -32.06351 -30.39971 -29.97238 -28.40207 -27.08369 -26.47656 -23.96260 -22.74814 -21.95869 -21.54085 -20.14305 -17.96987 -17.17274 -16.57692 -16.30715 -16.13936 -15.04265 -14.71931 -14.53225 -14.40399 -14.24802 -13.81077 -13.70428 -12.99581 -12.83036 -12.76016 -12.65306 -12.34716 -12.15566 -12.01883 -11.60251 -11.40348 -11.23319 -11.06440 -10.79552 -10.55497 -10.30524 -9.84953 -9.58426 -9.52702 -9.45523 -8.66137 -8.46884 -8.36707 -7.58262 -6.08269 -4.12390 0.96595 1.12802 1.98966 2.07376 2.95773 3.27002 3.34929 3.39882 3.68267 4.23803 4.31748 4.48427 4.66999 4.76963 4.96372 5.02386 5.12024 5.12659 5.26237 5.37929 5.38453 5.44840 5.47680 5.56518 5.64228 5.79160 5.89813 5.92455 6.10502 6.15041 6.29006 6.37619 6.56578 6.64103 6.99960 7.08472 7.11916 7.14331 7.45083 7.63486 7.78853 7.78921 7.87599 8.26849 8.93254 9.51871 11.01522 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.031661 B = 0.003156 C = 0.002995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.157276 B = 8869.118723 C = 9345.871709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.312 6.312 3 C 0.310 3.690 4 C -0.191 4.191 5 C -0.001 4.001 6 C -0.119 4.119 7 C -0.113 4.113 8 C -0.081 4.081 9 C -0.105 4.105 10 C -0.124 4.124 11 C -0.024 4.024 12 C 0.045 3.955 13 C -0.511 4.511 14 H 0.058 0.942 15 C 0.058 3.942 16 N -0.894 5.894 17 Si 0.895 3.105 18 H -0.272 1.272 19 H -0.283 1.283 20 H -0.283 1.283 21 C -0.124 4.124 22 C -0.103 4.103 23 C 0.149 3.851 24 N -0.542 5.542 25 H 0.093 0.907 26 H 0.058 0.942 27 H 0.058 0.942 28 H 0.139 0.861 29 H 0.080 0.920 30 H 0.069 0.931 31 H 0.083 0.917 32 H 0.112 0.888 33 H 0.120 0.880 34 H 0.029 0.971 35 H 0.029 0.971 36 H 0.262 0.738 37 H 0.120 0.880 38 H 0.112 0.888 39 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.168 -20.421 -1.627 21.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.219 6.219 3 C 0.132 3.868 4 C -0.211 4.211 5 C -0.008 4.008 6 C -0.175 4.175 7 C -0.115 4.115 8 C -0.081 4.081 9 C -0.123 4.123 10 C -0.142 4.142 11 C -0.024 4.024 12 C 0.008 3.992 13 C -0.550 4.550 14 H 0.076 0.924 15 C -0.143 4.143 16 N -0.533 5.533 17 Si 0.723 3.277 18 H -0.196 1.196 19 H -0.209 1.209 20 H -0.209 1.209 21 C -0.142 4.142 22 C -0.122 4.122 23 C -0.007 4.007 24 N -0.265 5.265 25 H 0.111 0.889 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.157 0.843 29 H 0.098 0.902 30 H 0.088 0.912 31 H 0.102 0.898 32 H 0.131 0.869 33 H 0.138 0.862 34 H 0.048 0.952 35 H 0.048 0.952 36 H 0.071 0.929 37 H 0.138 0.862 38 H 0.130 0.870 39 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -6.873 -20.634 -1.657 21.811 hybrid contribution 0.027 0.919 0.646 1.123 sum -6.846 -19.715 -1.011 20.894 Atomic orbital electron populations 1.22819 0.77449 1.02640 1.02485 1.86202 1.22753 1.24829 1.88129 1.19810 0.89277 0.84632 0.93095 1.20808 0.91784 0.98789 1.09759 1.20188 0.96849 0.91024 0.92784 1.20941 0.89606 1.03788 1.03162 1.19612 0.93788 0.93263 1.04841 1.18221 0.99345 0.91585 0.98992 1.21057 0.99774 0.93290 0.98198 1.21033 0.97327 0.95733 1.00066 1.20795 0.93198 0.97011 0.91405 1.18404 0.95963 0.86622 0.98214 1.21083 1.12871 0.94734 1.26282 0.92376 1.25015 0.95166 0.98143 0.96019 1.69961 1.25060 1.16019 1.42227 0.86480 0.80037 0.80643 0.80577 1.19633 1.20927 1.20914 1.21033 1.01097 0.92705 0.99412 1.21072 0.96311 0.96760 0.98013 1.22548 0.91997 0.93356 0.92787 1.67253 1.40723 0.98730 1.19829 0.88864 0.92366 0.92371 0.84307 0.90185 0.91204 0.89814 0.86949 0.86174 0.95236 0.95239 0.92853 0.86189 0.86950 0.82168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.37 10.38 101.05 1.05 1.41 16 2 O -0.31 -3.70 10.47 -18.67 -0.20 -3.89 16 3 C 0.31 4.04 7.49 -17.07 -0.13 3.92 16 4 C -0.19 -2.26 9.73 -39.33 -0.38 -2.64 16 5 C 0.00 -0.01 5.90 -104.03 -0.61 -0.63 16 6 C -0.12 -1.20 8.53 36.00 0.31 -0.89 16 7 C -0.11 -1.54 5.48 -104.74 -0.57 -2.11 16 8 C -0.08 -1.22 4.79 -104.90 -0.50 -1.73 16 9 C -0.11 -1.67 9.53 -39.25 -0.37 -2.04 16 10 C -0.12 -2.29 9.68 -39.63 -0.38 -2.67 16 11 C -0.02 -0.50 5.07 -104.56 -0.53 -1.03 16 12 C 0.04 1.12 5.10 -29.04 -0.15 0.97 16 13 C -0.51 -14.02 9.09 -34.44 -0.31 -14.33 16 14 H 0.06 1.59 7.74 -52.49 -0.41 1.19 16 15 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 16 N -0.89 -26.00 13.29 55.43 0.74 -25.26 16 17 Si 0.89 21.25 29.54 -169.99 -5.02 16.23 16 18 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 19 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 20 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 21 C -0.12 -2.29 9.68 -39.63 -0.38 -2.67 16 22 C -0.10 -1.62 7.99 -39.25 -0.31 -1.93 16 23 C 0.15 1.99 10.69 -17.21 -0.18 1.80 16 24 N -0.54 -7.39 9.19 -13.05 -0.12 -7.51 16 25 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.06 0.52 8.10 -51.93 -0.42 0.10 16 27 H 0.06 0.52 8.10 -51.93 -0.42 0.10 16 28 H 0.14 1.34 8.06 -52.49 -0.42 0.92 16 29 H 0.08 0.73 7.59 -51.93 -0.39 0.34 16 30 H 0.07 0.58 8.10 -51.93 -0.42 0.16 16 31 H 0.08 0.95 6.59 -51.93 -0.34 0.61 16 32 H 0.11 1.53 8.05 -52.49 -0.42 1.11 16 33 H 0.12 2.17 8.06 -52.49 -0.42 1.75 16 34 H 0.03 0.77 8.09 -51.93 -0.42 0.35 16 35 H 0.03 0.77 8.08 -51.93 -0.42 0.35 16 36 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 37 H 0.12 2.15 8.06 -52.48 -0.42 1.72 16 38 H 0.11 1.51 6.95 -52.49 -0.37 1.15 16 39 H 0.16 1.92 8.05 -52.49 -0.42 1.50 16 LS Contribution 334.47 15.07 5.04 5.04 Total: -1.00 -30.20 334.47 -8.41 -38.61 By element: Atomic # 1 Polarization: 5.12 SS G_CDS: -5.28 Total: -0.16 kcal Atomic # 6 Polarization: -19.48 SS G_CDS: -3.57 Total: -23.06 kcal Atomic # 7 Polarization: -33.39 SS G_CDS: 0.62 Total: -32.77 kcal Atomic # 8 Polarization: -3.70 SS G_CDS: -0.20 Total: -3.89 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -30.20 -8.41 -38.61 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241762168.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.776 kcal (2) G-P(sol) polarization free energy of solvation -30.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.610 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds