Wall clock time and date at job start Tue Mar 31 2020 05:55:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35658 * 116.99981 * 2 1 4 4 C 1.39008 * 119.55282 * 179.97438 * 3 2 1 5 5 C 1.38153 * 119.23510 * 179.97438 * 4 3 2 6 6 C 1.50697 * 120.81280 * 180.02562 * 5 4 3 7 7 C 1.39917 * 118.37714 * 0.02562 * 5 4 3 8 8 C 1.48377 * 120.47423 * 179.97438 * 7 5 4 9 9 C 1.39347 * 120.12276 * 129.99899 * 8 7 5 10 10 C 1.38017 * 119.87628 * 179.97438 * 9 8 7 11 11 C 1.38325 * 120.12186 * 0.27929 * 10 9 8 12 12 C 1.50694 * 119.87545 * 179.72078 * 11 10 9 13 13 C 1.50699 * 109.47113 * 89.99926 * 12 11 10 14 14 H 1.08002 * 120.00071 * 0.02562 * 13 12 11 15 15 C 1.37879 * 120.00208 * 180.02562 * 13 12 11 16 16 N 1.31514 * 119.99816 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 120.00180 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47160 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.47193 * 119.99791 * 17 15 13 20 20 H 1.48499 * 109.47203 * 239.99717 * 17 15 13 21 21 C 1.38321 * 120.24448 * 359.44562 * 11 10 9 22 22 C 1.38018 * 120.12480 * 0.55021 * 21 11 10 23 23 C 1.39179 * 119.05431 * 0.25427 * 7 5 4 24 24 N 1.31817 * 120.66200 * 359.46939 * 23 7 5 25 25 H 1.09006 * 109.47356 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47505 * 300.00011 * 1 2 3 27 27 H 1.09004 * 109.47082 * 60.00458 * 1 2 3 28 28 H 1.07994 * 120.38502 * 0.02562 * 4 3 2 29 29 H 1.08994 * 109.47099 * 269.98145 * 6 5 4 30 30 H 1.09007 * 109.46993 * 29.97771 * 6 5 4 31 31 H 1.08994 * 109.47345 * 149.97924 * 6 5 4 32 32 H 1.08000 * 120.06140 * 359.95841 * 9 8 7 33 33 H 1.08002 * 119.93521 * 179.97438 * 10 9 8 34 34 H 1.09006 * 109.47258 * 210.00316 * 12 11 10 35 35 H 1.09002 * 109.47505 * 329.99915 * 12 11 10 36 36 H 0.96996 * 120.00262 * 180.02562 * 16 15 13 37 37 H 1.08005 * 119.93982 * 180.25727 * 21 11 10 38 38 H 1.07993 * 120.06763 * 179.74405 * 22 21 11 39 39 H 1.08000 * 119.66850 * 179.74689 * 23 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2087 0.0000 4 6 3.4335 1.2706 0.0005 5 6 4.0539 2.5051 0.0000 6 6 5.5570 2.6136 0.0000 7 6 3.2526 3.6520 -0.0005 8 6 3.8699 5.0013 -0.0006 9 6 3.4567 5.9593 -0.9242 10 6 4.0340 7.2130 -0.9193 11 6 5.0250 7.5173 -0.0036 12 6 5.6560 8.8857 -0.0073 13 6 4.8803 9.7990 0.9066 14 1 4.0170 9.4257 1.4374 15 6 5.2727 11.1113 1.0652 16 7 6.3242 11.5658 0.4192 17 14 4.3116 12.2431 2.1986 18 1 3.1813 11.4940 2.8040 19 1 5.2059 12.7428 3.2737 20 1 3.7840 13.3921 1.4197 21 6 5.4351 6.5719 0.9192 22 6 4.8646 5.3151 0.9235 23 6 1.8681 3.5093 0.0049 24 7 1.3157 2.3125 0.0000 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8901 28 1 4.0207 0.3643 0.0005 29 1 5.9193 2.6406 1.0276 30 1 5.9835 1.7516 -0.5131 31 1 5.8553 3.5270 -0.5145 32 1 2.6863 5.7213 -1.6427 33 1 3.7148 7.9561 -1.6351 34 1 6.6861 8.8119 0.3415 35 1 5.6434 9.2890 -1.0200 36 1 6.6005 12.4888 0.5309 37 1 6.2064 6.8162 1.6347 38 1 5.1884 4.5765 1.6417 39 1 1.2401 4.3879 0.0087 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241762168.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:32 Heat of formation + Delta-G solvation = -12.533573 kcal Electronic energy + Delta-G solvation = -20689.102008 eV Core-core repulsion = 17560.481559 eV Total energy + Delta-G solvation = -3128.620449 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.77375 -40.17391 -38.80360 -35.70934 -34.87290 -33.55254 -31.74762 -31.31507 -29.45285 -28.23147 -27.63919 -25.49363 -24.08732 -23.28818 -22.60799 -21.55334 -18.85609 -18.51850 -18.11292 -17.73488 -17.00483 -16.73265 -16.01045 -15.88525 -15.48030 -15.27900 -14.90160 -14.74836 -14.52174 -14.21817 -13.87948 -13.68506 -13.54089 -13.48413 -13.28024 -12.89433 -12.80127 -12.63283 -12.56602 -12.26054 -12.13016 -11.76602 -11.52672 -11.39423 -10.70846 -10.61020 -10.50385 -9.80762 -9.72276 -8.91239 -8.19695 -6.33344 -0.10318 0.18984 0.62385 0.76554 1.39450 1.40452 1.53574 2.12729 2.39546 2.68283 3.02726 3.10678 3.31104 3.64741 3.80697 4.03585 4.09009 4.20784 4.22115 4.38031 4.44015 4.45736 4.52873 4.69349 4.71338 4.76873 4.77588 4.81681 4.86784 5.07631 5.13282 5.19755 5.34934 5.38485 5.43331 5.44425 5.65047 5.69081 5.76463 6.10166 6.11255 6.21515 6.26317 6.79935 6.81474 7.35376 8.89066 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.031661 B = 0.003156 C = 0.002995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.157276 B = 8869.118723 C = 9345.871709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.318 6.318 3 C 0.302 3.698 4 C -0.191 4.191 5 C 0.003 3.997 6 C -0.119 4.119 7 C -0.130 4.130 8 C -0.061 4.061 9 C -0.100 4.100 10 C -0.133 4.133 11 C -0.057 4.057 12 C 0.054 3.946 13 C -0.526 4.526 14 H 0.054 0.946 15 C 0.004 3.996 16 N -0.930 5.930 17 Si 0.964 3.036 18 H -0.265 1.265 19 H -0.276 1.276 20 H -0.277 1.277 21 C -0.132 4.132 22 C -0.094 4.094 23 C 0.146 3.854 24 N -0.555 5.555 25 H 0.124 0.876 26 H 0.054 0.946 27 H 0.055 0.945 28 H 0.163 0.837 29 H 0.094 0.906 30 H 0.091 0.909 31 H 0.069 0.931 32 H 0.138 0.862 33 H 0.115 0.885 34 H 0.005 0.995 35 H 0.003 0.997 36 H 0.265 0.735 37 H 0.117 0.883 38 H 0.140 0.860 39 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.380 -22.757 -0.894 23.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.226 6.226 3 C 0.124 3.876 4 C -0.211 4.211 5 C -0.004 4.004 6 C -0.175 4.175 7 C -0.133 4.133 8 C -0.062 4.062 9 C -0.117 4.117 10 C -0.151 4.151 11 C -0.057 4.057 12 C 0.017 3.983 13 C -0.564 4.564 14 H 0.072 0.928 15 C -0.194 4.194 16 N -0.570 5.570 17 Si 0.789 3.211 18 H -0.190 1.190 19 H -0.202 1.202 20 H -0.202 1.202 21 C -0.150 4.150 22 C -0.111 4.111 23 C -0.010 4.010 24 N -0.279 5.279 25 H 0.142 0.858 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.180 0.820 29 H 0.112 0.888 30 H 0.110 0.890 31 H 0.088 0.912 32 H 0.156 0.844 33 H 0.133 0.867 34 H 0.023 0.977 35 H 0.021 0.979 36 H 0.074 0.926 37 H 0.135 0.865 38 H 0.158 0.842 39 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -8.093 -22.987 -0.927 24.387 hybrid contribution 0.350 1.449 0.381 1.538 sum -7.743 -21.538 -0.546 22.894 Atomic orbital electron populations 1.23040 0.75993 1.04602 1.02131 1.86204 1.24237 1.24280 1.87836 1.20148 0.90011 0.84853 0.92619 1.21064 0.91567 0.99524 1.08962 1.20410 0.97786 0.90630 0.91552 1.21005 0.88244 1.04139 1.04154 1.19523 0.94113 0.92686 1.06969 1.18396 0.98098 0.92157 0.97570 1.21253 0.99759 0.92103 0.98634 1.21019 0.97299 0.97026 0.99740 1.20463 0.95360 0.95628 0.94275 1.18134 0.94861 0.89261 0.96030 1.21405 1.12880 0.95588 1.26539 0.92750 1.25913 0.96115 0.99812 0.97555 1.70080 1.26619 1.16589 1.43732 0.85407 0.78712 0.78458 0.78552 1.18951 1.20197 1.20222 1.21032 1.01474 0.93522 0.98982 1.21259 0.95733 0.95880 0.98261 1.22695 0.92087 0.93729 0.92453 1.67275 1.41118 0.98968 1.20557 0.85830 0.92742 0.92666 0.81990 0.88807 0.88988 0.91186 0.84427 0.86719 0.97698 0.97852 0.92580 0.86520 0.84195 0.81351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.57 10.38 113.37 1.18 1.75 16 2 O -0.32 -6.76 10.47 -89.73 -0.94 -7.70 16 3 C 0.30 7.13 7.49 84.81 0.64 7.77 16 4 C -0.19 -3.92 9.73 22.43 0.22 -3.70 16 5 C 0.00 0.07 5.90 -19.48 -0.12 -0.04 16 6 C -0.12 -2.03 8.53 71.24 0.61 -1.42 16 7 C -0.13 -3.23 5.48 -19.94 -0.11 -3.34 16 8 C -0.06 -1.75 4.79 -20.04 -0.10 -1.84 16 9 C -0.10 -3.04 9.53 22.48 0.21 -2.82 16 10 C -0.13 -5.00 9.68 22.24 0.22 -4.78 16 11 C -0.06 -2.45 5.07 -19.83 -0.10 -2.55 16 12 C 0.05 2.86 5.10 29.10 0.15 3.00 16 13 C -0.53 -29.82 9.09 25.60 0.23 -29.59 16 14 H 0.05 3.05 7.74 -2.91 -0.02 3.02 16 15 C 0.00 0.24 5.46 84.66 0.46 0.70 16 16 N -0.93 -55.75 13.29 21.45 0.28 -55.47 16 17 Si 0.96 44.11 29.54 68.60 2.03 46.14 16 18 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 19 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 20 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 21 C -0.13 -4.89 9.68 22.24 0.22 -4.67 16 22 C -0.09 -2.77 7.99 22.49 0.18 -2.59 16 23 C 0.15 3.58 10.69 84.92 0.91 4.49 16 24 N -0.56 -14.00 9.19 -308.06 -2.83 -16.83 16 25 H 0.12 1.11 8.14 -2.38 -0.02 1.09 16 26 H 0.05 0.88 8.10 -2.39 -0.02 0.86 16 27 H 0.05 0.88 8.10 -2.39 -0.02 0.86 16 28 H 0.16 2.51 8.06 -2.91 -0.02 2.48 16 29 H 0.09 1.37 7.59 -2.39 -0.02 1.35 16 30 H 0.09 1.17 8.10 -2.38 -0.02 1.15 16 31 H 0.07 1.42 6.59 -2.39 -0.02 1.40 16 32 H 0.14 3.47 8.05 -2.91 -0.02 3.45 16 33 H 0.11 4.32 8.06 -2.91 -0.02 4.29 16 34 H 0.00 0.26 8.09 -2.38 -0.02 0.25 16 35 H 0.00 0.18 8.08 -2.39 -0.02 0.16 16 36 H 0.27 14.87 8.31 -92.71 -0.77 14.10 16 37 H 0.12 4.28 8.06 -2.91 -0.02 4.26 16 38 H 0.14 3.36 6.95 -2.91 -0.02 3.34 16 39 H 0.17 3.71 8.05 -2.91 -0.02 3.69 16 Total: -1.00 -66.32 334.47 4.37 -61.95 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: 1.04 Total: 11.57 kcal Atomic # 6 Polarization: -44.44 SS G_CDS: 4.79 Total: -39.65 kcal Atomic # 7 Polarization: -69.76 SS G_CDS: -2.55 Total: -72.30 kcal Atomic # 8 Polarization: -6.76 SS G_CDS: -0.94 Total: -7.70 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.14 kcal Total: -66.32 4.37 -61.95 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241762168.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.412 kcal (2) G-P(sol) polarization free energy of solvation -66.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds