Wall clock time and date at job start Tue Mar 31 2020 05:35:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35599 * 117.00218 * 2 1 4 4 C 1.39128 * 119.52611 * 180.02562 * 3 2 1 5 5 C 1.38024 * 119.26657 * 179.74499 * 4 3 2 6 6 C 1.50692 * 120.82494 * 180.27983 * 5 4 3 7 7 C 1.40210 * 118.35595 * 0.50608 * 5 4 3 8 8 C 1.47909 * 120.49859 * 179.75550 * 7 5 4 9 9 C 1.40011 * 119.88245 * 309.71926 * 8 7 5 10 10 C 1.36203 * 120.11850 * 180.02562 * 9 8 7 11 11 C 1.40963 * 119.87841 * 359.97438 * 10 9 8 12 12 C 1.41009 * 120.11227 * 179.72377 * 11 10 9 13 13 H 1.07996 * 119.99765 * 149.60041 * 12 11 10 14 14 C 1.39980 * 119.99937 * 329.60238 * 12 11 10 15 15 N 1.30816 * 119.99832 * 162.15538 * 14 12 11 16 16 Si 1.86801 * 119.99943 * 342.15614 * 14 12 11 17 17 H 1.48504 * 109.47260 * 95.39215 * 16 14 12 18 18 H 1.48500 * 109.46948 * 215.38948 * 16 14 12 19 19 H 1.48500 * 109.47258 * 335.39143 * 16 14 12 20 20 C 1.40929 * 119.77498 * 359.97438 * 11 10 9 21 21 C 1.50697 * 120.06022 * 179.97438 * 20 11 10 22 22 C 1.36235 * 119.87926 * 0.02916 * 20 11 10 23 23 C 1.39508 * 119.00531 * 359.47793 * 7 5 4 24 24 N 1.31737 * 120.62543 * 0.27501 * 23 7 5 25 25 H 1.09001 * 109.46858 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47009 * 299.99786 * 1 2 3 27 27 H 1.08999 * 109.46969 * 59.99178 * 1 2 3 28 28 H 1.08004 * 120.36735 * 0.02562 * 4 3 2 29 29 H 1.08998 * 109.47301 * 270.23366 * 6 5 4 30 30 H 1.09005 * 109.46930 * 30.23226 * 6 5 4 31 31 H 1.09004 * 109.47600 * 150.22736 * 6 5 4 32 32 H 1.07999 * 119.93965 * 359.97438 * 9 8 7 33 33 H 1.07998 * 120.05894 * 179.97438 * 10 9 8 34 34 H 0.97007 * 119.99639 * 180.02562 * 15 14 12 35 35 H 1.09003 * 109.47492 * 90.00381 * 21 20 11 36 36 H 1.09003 * 109.47226 * 210.00308 * 21 20 11 37 37 H 1.09005 * 109.47137 * 330.00082 * 21 20 11 38 38 H 1.08006 * 119.94096 * 179.97438 * 22 20 11 39 39 H 1.08005 * 119.69044 * 180.29628 * 23 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0447 1.2082 0.0000 4 6 3.4346 1.2694 -0.0005 5 6 4.0557 2.5020 -0.0059 6 6 5.5588 2.6093 -0.0130 7 6 3.2535 3.6520 0.0003 8 6 3.8693 4.9968 0.0004 9 6 4.8693 5.3061 0.9302 10 6 5.4392 6.5431 0.9350 11 6 5.0209 7.5126 0.0011 12 6 5.6035 8.7967 0.0053 13 1 5.6877 9.3544 -0.9156 14 6 6.0726 9.3484 1.2032 15 7 6.9095 10.3535 1.1768 16 14 5.5035 8.6495 2.8394 17 1 6.4978 7.6605 3.3279 18 1 5.3722 9.7493 3.8286 19 1 4.1883 7.9831 2.6625 20 6 4.0147 7.1958 -0.9334 21 6 3.5622 8.2275 -1.9343 22 6 3.4511 5.9555 -0.9296 23 6 1.8658 3.5087 0.0004 24 7 1.3147 2.3122 0.0003 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5140 -0.8899 28 1 4.0211 0.3625 -0.0014 29 1 5.9262 2.6331 1.0129 30 1 5.9820 1.7484 -0.5306 31 1 5.8555 3.5239 -0.5265 32 1 5.1887 4.5627 1.6456 33 1 6.2102 6.7808 1.6529 34 1 7.2349 10.7356 2.0070 35 1 4.1693 8.1496 -2.8363 36 1 2.5154 8.0558 -2.1851 37 1 3.6744 9.2234 -1.5056 38 1 2.6796 5.7117 -1.6451 39 1 1.2373 4.3871 0.0003 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241766164.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:59 Heat of formation + Delta-G solvation = -0.881936 kcal Electronic energy + Delta-G solvation = -21343.751290 eV Core-core repulsion = 18215.636094 eV Total energy + Delta-G solvation = -3128.115196 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.39179 -38.51178 -37.44205 -34.15015 -33.46827 -32.02088 -31.19041 -29.41250 -27.99577 -26.75408 -26.19865 -24.83751 -22.82654 -21.50215 -21.18446 -19.50214 -17.65093 -17.52028 -16.79678 -15.97939 -15.85437 -15.13865 -14.44429 -14.23734 -14.11032 -13.80858 -13.60784 -13.18946 -12.88520 -12.68531 -12.59955 -12.44145 -12.26535 -11.89136 -11.84276 -11.57727 -11.40315 -11.16375 -11.05887 -10.88185 -10.64920 -10.28858 -9.92933 -9.62229 -9.34484 -9.33487 -9.14155 -8.28801 -7.72017 -7.29776 -7.09728 -4.57470 1.38286 1.49920 2.50925 2.65338 3.03666 3.15006 3.24547 3.25030 3.88116 4.03007 4.39224 4.58816 5.08466 5.16825 5.22780 5.26522 5.31199 5.42716 5.47480 5.59968 5.77148 5.85838 5.92523 5.96057 6.01177 6.18853 6.22014 6.29890 6.45106 6.54857 6.63678 6.68325 6.74198 6.84710 6.88554 7.05630 7.37280 7.43934 7.58359 7.66019 7.80145 8.01490 8.14743 8.21832 8.54752 8.66443 9.90733 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.026974 B = 0.004224 C = 0.004042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.793123 B = 6627.610363 C = 6925.229224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.315 6.315 3 C 0.291 3.709 4 C -0.187 4.187 5 C -0.018 4.018 6 C -0.113 4.113 7 C -0.073 4.073 8 C -0.192 4.192 9 C -0.053 4.053 10 C -0.240 4.240 11 C 0.100 3.900 12 C -0.432 4.432 13 H 0.095 0.905 14 C 0.083 3.917 15 N -0.799 5.799 16 Si 0.912 3.088 17 H -0.269 1.269 18 H -0.290 1.290 19 H -0.242 1.242 20 C -0.182 4.182 21 C -0.089 4.089 22 C -0.056 4.056 23 C 0.128 3.872 24 N -0.541 5.541 25 H 0.090 0.910 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.133 0.867 29 H 0.073 0.927 30 H 0.063 0.937 31 H 0.085 0.915 32 H 0.093 0.907 33 H 0.101 0.899 34 H 0.288 0.712 35 H 0.045 0.955 36 H 0.041 0.959 37 H 0.065 0.935 38 H 0.095 0.905 39 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.125 -12.247 -0.566 13.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 O -0.223 6.223 3 C 0.113 3.887 4 C -0.207 4.207 5 C -0.026 4.026 6 C -0.170 4.170 7 C -0.075 4.075 8 C -0.194 4.194 9 C -0.071 4.071 10 C -0.259 4.259 11 C 0.097 3.903 12 C -0.460 4.460 13 H 0.113 0.887 14 C -0.137 4.137 15 N -0.422 5.422 16 Si 0.738 3.262 17 H -0.195 1.195 18 H -0.218 1.218 19 H -0.165 1.165 20 C -0.183 4.183 21 C -0.146 4.146 22 C -0.074 4.074 23 C -0.027 4.027 24 N -0.264 5.264 25 H 0.108 0.892 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.151 0.849 29 H 0.092 0.908 30 H 0.082 0.918 31 H 0.104 0.896 32 H 0.112 0.888 33 H 0.119 0.881 34 H 0.098 0.902 35 H 0.064 0.936 36 H 0.060 0.940 37 H 0.084 0.916 38 H 0.113 0.887 39 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -6.756 -12.352 -0.490 14.087 hybrid contribution 0.521 -0.020 0.823 0.974 sum -6.235 -12.372 0.333 13.858 Atomic orbital electron populations 1.22744 0.77955 1.02221 1.02270 1.86159 1.22332 1.25167 1.88671 1.19731 0.89204 0.84484 0.95322 1.20751 0.91664 0.98650 1.09683 1.20251 0.96767 0.91173 0.94392 1.20865 0.89924 1.03505 1.02681 1.19695 0.93215 0.93717 1.00910 1.17739 1.05411 0.92118 1.04098 1.20375 0.94614 0.95814 0.96335 1.20696 1.05360 0.94441 1.05359 1.17654 0.89206 0.92978 0.90446 1.19553 1.30138 0.99890 0.96375 0.88665 1.26255 0.91483 0.93898 1.02078 1.69689 1.21039 1.20153 1.31273 0.86288 0.82214 0.78134 0.79565 1.19539 1.21764 1.16510 1.19420 1.00652 0.95206 1.03049 1.20457 0.98365 0.98818 0.96949 1.20276 0.98146 0.92492 0.96521 1.22588 0.92394 0.92905 0.94820 1.67161 1.40878 0.98852 1.19529 0.89203 0.92613 0.92611 0.84898 0.90797 0.91838 0.89611 0.88845 0.88120 0.90190 0.93602 0.94019 0.91581 0.88735 0.82613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.48 10.37 101.05 1.05 1.53 16 2 O -0.32 -4.52 10.47 -18.50 -0.19 -4.72 16 3 C 0.29 4.64 7.49 -17.00 -0.13 4.51 16 4 C -0.19 -2.81 9.73 -39.33 -0.38 -3.19 16 5 C -0.02 -0.29 5.91 -103.96 -0.61 -0.91 16 6 C -0.11 -1.58 8.53 36.00 0.31 -1.27 16 7 C -0.07 -1.28 5.48 -104.72 -0.57 -1.86 16 8 C -0.19 -3.75 4.81 -104.63 -0.50 -4.25 16 9 C -0.05 -1.08 7.92 -39.65 -0.31 -1.40 16 10 C -0.24 -5.42 7.08 -39.28 -0.28 -5.70 16 11 C 0.10 2.38 5.09 -106.80 -0.54 1.84 16 12 C -0.43 -10.91 8.50 -37.88 -0.32 -11.23 16 13 H 0.10 2.50 7.22 -52.49 -0.38 2.12 16 14 C 0.08 2.07 5.40 -17.33 -0.09 1.97 16 15 N -0.80 -20.21 13.93 55.55 0.77 -19.43 16 16 Si 0.91 19.94 24.51 -169.99 -4.17 15.77 16 17 H -0.27 -5.73 6.71 56.52 0.38 -5.35 16 18 H -0.29 -6.16 7.11 56.52 0.40 -5.75 16 19 H -0.24 -5.47 6.86 56.52 0.39 -5.08 16 20 C -0.18 -3.94 5.90 -104.33 -0.62 -4.56 16 21 C -0.09 -1.70 9.41 36.00 0.34 -1.36 16 22 C -0.06 -1.12 9.08 -39.66 -0.36 -1.48 16 23 C 0.13 2.16 10.68 -17.12 -0.18 1.97 16 24 N -0.54 -8.98 9.18 -12.95 -0.12 -9.10 16 25 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 26 H 0.06 0.62 8.10 -51.93 -0.42 0.20 16 27 H 0.06 0.62 8.10 -51.93 -0.42 0.19 16 28 H 0.13 1.69 8.06 -52.48 -0.42 1.27 16 29 H 0.07 0.96 7.59 -51.93 -0.39 0.57 16 30 H 0.06 0.74 8.10 -51.93 -0.42 0.32 16 31 H 0.09 1.34 6.60 -51.93 -0.34 1.00 16 32 H 0.09 1.72 6.97 -52.49 -0.37 1.36 16 33 H 0.10 2.29 4.79 -52.49 -0.25 2.04 16 34 H 0.29 6.59 8.30 -40.82 -0.34 6.25 16 35 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.04 0.69 8.08 -51.93 -0.42 0.27 16 37 H 0.07 1.32 6.84 -51.93 -0.36 0.96 16 38 H 0.09 1.70 8.04 -52.48 -0.42 1.27 16 39 H 0.16 2.41 8.04 -52.48 -0.42 1.99 16 LS Contribution 321.28 15.07 4.84 4.84 Total: -1.00 -26.57 321.28 -7.13 -33.70 By element: Atomic # 1 Polarization: 9.37 SS G_CDS: -5.05 Total: 4.32 kcal Atomic # 6 Polarization: -22.17 SS G_CDS: -3.22 Total: -25.39 kcal Atomic # 7 Polarization: -29.19 SS G_CDS: 0.65 Total: -28.53 kcal Atomic # 8 Polarization: -4.52 SS G_CDS: -0.19 Total: -4.72 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -4.17 Total: 15.77 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -26.57 -7.13 -33.70 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241766164.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.821 kcal (2) G-P(sol) polarization free energy of solvation -26.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds