Wall clock time and date at job start Tue Mar 31 2020 05:35:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35607 * 117.00055 * 2 1 4 4 C 1.39128 * 119.52512 * 179.97438 * 3 2 1 5 5 C 1.38024 * 119.26421 * 180.02562 * 4 3 2 6 6 C 1.50701 * 120.82041 * 179.97438 * 5 4 3 7 7 C 1.40204 * 118.35833 * 0.02562 * 5 4 3 8 8 C 1.47919 * 120.49797 * 180.02562 * 7 5 4 9 9 C 1.39999 * 119.88045 * 244.97488 * 8 7 5 10 10 C 1.36209 * 120.11437 * 179.97438 * 9 8 7 11 11 C 1.40962 * 119.88246 * 0.02562 * 10 9 8 12 12 C 1.40997 * 120.11289 * 179.97438 * 11 10 9 13 13 H 1.07999 * 120.00228 * 24.70667 * 12 11 10 14 14 C 1.39982 * 120.00076 * 204.70296 * 12 11 10 15 15 N 1.30816 * 119.99752 * 17.97931 * 14 12 11 16 16 Si 1.86801 * 120.00196 * 197.98001 * 14 12 11 17 17 H 1.48496 * 109.47015 * 89.99738 * 16 14 12 18 18 H 1.48495 * 109.47017 * 210.00015 * 16 14 12 19 19 H 1.48497 * 109.47036 * 329.99887 * 16 14 12 20 20 C 1.40928 * 119.76954 * 0.02562 * 11 10 9 21 21 C 1.36246 * 119.87991 * 359.70854 * 20 11 10 22 22 C 1.50700 * 119.93753 * 180.30000 * 21 20 11 23 23 C 1.39511 * 119.00685 * 359.97438 * 7 5 4 24 24 N 1.31729 * 120.62137 * 0.25638 * 23 7 5 25 25 H 1.08994 * 109.47132 * 299.99842 * 1 2 3 26 26 H 1.09003 * 109.46640 * 60.00172 * 1 2 3 27 27 H 1.09002 * 109.46863 * 179.97438 * 1 2 3 28 28 H 1.08003 * 120.36950 * 0.04492 * 4 3 2 29 29 H 1.09000 * 109.47233 * 270.02128 * 6 5 4 30 30 H 1.08996 * 109.46942 * 30.01950 * 6 5 4 31 31 H 1.08994 * 109.47048 * 150.02131 * 6 5 4 32 32 H 1.08006 * 119.94385 * 359.97438 * 9 8 7 33 33 H 1.08000 * 120.05698 * 180.02562 * 10 9 8 34 34 H 0.97006 * 119.99950 * 180.02562 * 15 14 12 35 35 H 1.08001 * 120.05615 * 180.02562 * 20 11 10 36 36 H 1.08998 * 109.47246 * 270.24437 * 22 21 20 37 37 H 1.09002 * 109.47395 * 30.24178 * 22 21 20 38 38 H 1.09003 * 109.47046 * 150.24538 * 22 21 20 39 39 H 1.07998 * 119.69155 * 179.97438 * 23 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0447 1.2083 0.0000 4 6 3.4346 1.2695 0.0005 5 6 4.0556 2.5022 0.0011 6 6 5.5588 2.6094 0.0023 7 6 3.2534 3.6520 0.0016 8 6 3.8692 4.9970 0.0016 9 6 3.6930 5.8447 1.1018 10 6 4.2583 7.0839 1.1071 11 6 5.0213 7.5125 0.0020 12 6 5.6082 8.7945 0.0021 13 1 5.8286 9.2875 0.9374 14 6 5.9053 9.4284 -1.2101 15 7 5.3403 9.0204 -2.3172 16 14 7.1087 10.8567 -1.2470 17 1 8.4836 10.3401 -1.4659 18 1 6.7457 11.7814 -2.3507 19 1 7.0533 11.5840 0.0465 20 6 5.1945 6.6556 -1.1033 21 6 4.6293 5.4159 -1.0962 22 6 4.8194 4.4959 -2.2746 23 6 1.8657 3.5088 0.0010 24 7 1.3147 2.3122 0.0051 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 4.0211 0.3627 0.0002 29 1 5.9205 2.6349 1.0302 30 1 5.9849 1.7478 -0.5116 31 1 5.8582 3.5232 -0.5110 32 1 3.1079 5.5155 1.9478 33 1 4.1222 7.7369 1.9564 34 1 5.5464 9.4594 -3.1573 35 1 5.7785 6.9790 -1.9523 36 1 4.0201 4.6611 -2.9971 37 1 5.7815 4.7008 -2.7441 38 1 4.7939 3.4605 -1.9350 39 1 1.2372 4.3870 0.0018 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241769450.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:06 Heat of formation + Delta-G solvation = 4.257929 kcal Electronic energy + Delta-G solvation = -21475.930842 eV Core-core repulsion = 18348.038527 eV Total energy + Delta-G solvation = -3127.892314 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.35983 -38.42067 -37.16888 -34.31410 -33.36230 -31.61000 -31.01393 -29.04686 -27.77357 -26.71976 -25.82721 -25.05548 -22.85058 -21.45256 -20.61440 -19.54541 -17.57536 -17.17735 -16.76557 -15.81151 -15.69440 -15.21294 -14.39968 -14.13100 -14.04775 -13.79368 -13.33694 -13.18106 -12.85885 -12.58873 -12.44005 -12.15836 -11.88922 -11.82830 -11.62973 -11.47273 -11.24702 -11.13348 -10.97832 -10.76927 -10.64638 -10.41704 -9.78780 -9.53814 -9.35015 -9.11753 -9.09013 -8.06913 -7.44533 -7.23172 -6.86330 -4.43843 1.52072 1.61824 2.65570 3.00356 3.02971 3.04481 3.11660 3.30820 3.84430 4.13079 4.48250 4.67263 5.17545 5.26619 5.31144 5.36393 5.44124 5.56218 5.62483 5.66079 5.87910 5.97285 6.03479 6.03941 6.09207 6.30258 6.31095 6.38969 6.46992 6.65397 6.77956 6.81976 6.91297 6.97188 7.21847 7.28105 7.49663 7.55294 7.81632 7.96736 8.04999 8.19939 8.23964 8.53001 8.78142 8.88506 10.05220 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.036660 B = 0.003794 C = 0.003714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.588914 B = 7378.720111 C = 7536.986268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.316 6.316 3 C 0.293 3.707 4 C -0.192 4.192 5 C -0.012 4.012 6 C -0.123 4.123 7 C -0.067 4.067 8 C -0.194 4.194 9 C -0.064 4.064 10 C -0.231 4.231 11 C 0.119 3.881 12 C -0.455 4.455 13 H 0.079 0.921 14 C 0.076 3.924 15 N -0.783 5.783 16 Si 0.909 3.091 17 H -0.267 1.267 18 H -0.277 1.277 19 H -0.261 1.261 20 C -0.166 4.166 21 C -0.047 4.047 22 C -0.116 4.116 23 C 0.130 3.870 24 N -0.543 5.543 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.089 0.911 28 H 0.132 0.868 29 H 0.073 0.927 30 H 0.062 0.938 31 H 0.095 0.905 32 H 0.087 0.913 33 H 0.092 0.908 34 H 0.282 0.718 35 H 0.119 0.881 36 H 0.053 0.947 37 H 0.053 0.947 38 H 0.060 0.940 39 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.279 -10.366 1.140 10.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 O -0.224 6.224 3 C 0.115 3.885 4 C -0.212 4.212 5 C -0.019 4.019 6 C -0.179 4.179 7 C -0.069 4.069 8 C -0.196 4.196 9 C -0.083 4.083 10 C -0.250 4.250 11 C 0.116 3.884 12 C -0.484 4.484 13 H 0.098 0.902 14 C -0.143 4.143 15 N -0.407 5.407 16 Si 0.733 3.267 17 H -0.192 1.192 18 H -0.202 1.202 19 H -0.185 1.185 20 C -0.185 4.185 21 C -0.048 4.048 22 C -0.173 4.173 23 C -0.024 4.024 24 N -0.266 5.266 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.107 0.893 28 H 0.150 0.850 29 H 0.091 0.909 30 H 0.081 0.919 31 H 0.113 0.887 32 H 0.105 0.895 33 H 0.111 0.889 34 H 0.093 0.907 35 H 0.136 0.864 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.079 0.921 39 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -3.108 -10.652 0.882 11.131 hybrid contribution 0.942 0.923 -0.092 1.322 sum -2.166 -9.729 0.790 9.998 Atomic orbital electron populations 1.22738 0.78008 1.02161 1.02275 1.86158 1.22299 1.25237 1.88693 1.19740 0.89195 0.84488 0.95101 1.20760 0.91658 0.98657 1.10157 1.20283 0.96783 0.91169 0.93684 1.21050 0.89982 1.03912 1.02990 1.19685 0.93010 0.94003 1.00196 1.17585 1.11172 0.92976 0.97840 1.20247 0.98526 0.93831 0.95654 1.20640 1.06162 0.97051 1.01183 1.17656 0.87754 0.92324 0.90645 1.19622 1.34675 1.00821 0.93281 0.90241 1.25966 0.94784 0.98496 0.95084 1.69828 1.33207 1.37688 1.00020 0.86299 0.80944 0.80384 0.79092 1.19156 1.20236 1.18521 1.20854 1.04580 0.92241 1.00853 1.19145 0.97195 0.94914 0.93532 1.20959 1.00851 0.98678 0.96776 1.22663 0.92600 0.92779 0.94391 1.67164 1.40892 0.98871 1.19721 0.92627 0.92616 0.89252 0.84984 0.90872 0.91907 0.88660 0.89469 0.88947 0.90661 0.86356 0.92816 0.92768 0.92093 0.82652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.50 10.37 101.05 1.05 1.55 16 2 O -0.32 -4.69 10.47 -18.52 -0.19 -4.88 16 3 C 0.29 4.85 7.49 -17.00 -0.13 4.72 16 4 C -0.19 -3.00 9.73 -39.33 -0.38 -3.38 16 5 C -0.01 -0.19 4.78 -103.96 -0.50 -0.69 16 6 C -0.12 -1.82 8.72 36.01 0.31 -1.51 16 7 C -0.07 -1.23 4.62 -104.72 -0.48 -1.71 16 8 C -0.19 -4.04 4.72 -104.63 -0.49 -4.53 16 9 C -0.06 -1.38 9.67 -39.65 -0.38 -1.77 16 10 C -0.23 -5.41 9.73 -39.28 -0.38 -5.79 16 11 C 0.12 3.01 5.57 -106.80 -0.60 2.42 16 12 C -0.46 -11.53 9.03 -37.88 -0.34 -11.87 16 13 H 0.08 1.94 7.91 -52.49 -0.42 1.53 16 14 C 0.08 1.82 5.13 -17.33 -0.09 1.73 16 15 N -0.78 -19.35 10.96 55.55 0.61 -18.74 16 16 Si 0.91 17.87 29.60 -169.99 -5.03 12.84 16 17 H -0.27 -5.19 7.11 56.52 0.40 -4.79 16 18 H -0.28 -5.35 7.11 56.52 0.40 -4.95 16 19 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16 20 C -0.17 -4.06 8.26 -39.28 -0.32 -4.38 16 21 C -0.05 -1.03 4.79 -104.70 -0.50 -1.53 16 22 C -0.12 -2.16 8.61 36.01 0.31 -1.85 16 23 C 0.13 2.33 10.91 -17.12 -0.19 2.14 16 24 N -0.54 -9.41 9.18 -12.95 -0.12 -9.53 16 25 H 0.05 0.64 8.10 -51.93 -0.42 0.22 16 26 H 0.06 0.65 8.10 -51.93 -0.42 0.23 16 27 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.13 1.76 8.06 -52.48 -0.42 1.33 16 29 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.06 0.77 8.10 -51.93 -0.42 0.35 16 31 H 0.09 1.58 4.42 -51.93 -0.23 1.35 16 32 H 0.09 1.70 8.06 -52.48 -0.42 1.28 16 33 H 0.09 2.05 8.06 -52.49 -0.42 1.63 16 34 H 0.28 6.35 8.30 -40.82 -0.34 6.01 16 35 H 0.12 3.01 6.16 -52.49 -0.32 2.69 16 36 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 38 H 0.06 1.04 4.22 -51.93 -0.22 0.82 16 39 H 0.16 2.62 8.06 -52.49 -0.42 2.20 16 LS Contribution 323.71 15.07 4.88 4.88 Total: -1.00 -26.75 323.71 -7.94 -34.68 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: -4.96 Total: 7.22 kcal Atomic # 6 Polarization: -23.35 SS G_CDS: -3.12 Total: -26.47 kcal Atomic # 7 Polarization: -28.76 SS G_CDS: 0.49 Total: -28.27 kcal Atomic # 8 Polarization: -4.69 SS G_CDS: -0.19 Total: -4.88 kcal Atomic # 14 Polarization: 17.87 SS G_CDS: -5.03 Total: 12.84 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -26.75 -7.94 -34.68 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241769450.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.941 kcal (2) G-P(sol) polarization free energy of solvation -26.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.683 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds