Wall clock time and date at job start Tue Mar 31 2020 05:41:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37849 * 119.97669 * 2 1 4 4 C 1.39453 * 119.95035 * 180.02562 * 3 2 1 5 5 C 1.48248 * 120.05010 * 180.02562 * 4 3 2 6 6 C 1.39311 * 120.15928 * 309.99775 * 5 4 3 7 7 C 1.38013 * 119.93962 * 180.02562 * 6 5 4 8 8 C 1.38445 * 120.27327 * 0.02562 * 7 6 5 9 9 C 1.38124 * 120.32990 * 359.97438 * 8 7 6 10 10 C 1.38751 * 120.04895 * 0.25650 * 9 8 7 11 11 O 1.35671 * 120.13689 * 179.72991 * 10 9 8 12 12 C 1.34818 * 116.99874 * 354.39269 * 11 10 9 13 13 H 1.08003 * 119.99668 * 5.07441 * 12 11 10 14 14 C 1.38629 * 120.00205 * 185.06293 * 12 11 10 15 15 N 1.31567 * 119.99849 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 120.00371 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.46857 * 60.00283 * 16 14 12 18 18 H 1.48497 * 109.47612 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.47019 * 300.00685 * 16 14 12 20 20 C 1.39459 * 119.89704 * 0.27502 * 4 3 2 21 21 C 1.37847 * 119.94671 * 359.46925 * 20 4 3 22 22 C 1.50696 * 119.97413 * 180.25360 * 21 20 4 23 23 C 1.39025 * 120.05090 * 0.51100 * 21 20 4 24 24 N 1.39582 * 119.94746 * 179.74510 * 23 21 20 25 25 H 1.08992 * 109.47469 * 89.99970 * 1 2 3 26 26 H 1.09004 * 109.47040 * 210.00284 * 1 2 3 27 27 H 1.09000 * 109.46786 * 329.99623 * 1 2 3 28 28 H 1.08001 * 120.02404 * 0.02562 * 3 2 1 29 29 H 1.07992 * 120.03200 * 359.97438 * 6 5 4 30 30 H 1.07995 * 119.86596 * 179.97438 * 7 6 5 31 31 H 1.07997 * 119.83811 * 179.97438 * 8 7 6 32 32 H 1.08001 * 119.98033 * 179.97438 * 9 8 7 33 33 H 0.97008 * 120.00118 * 179.97438 * 15 14 12 34 34 H 1.08001 * 120.02454 * 179.72730 * 20 4 3 35 35 H 1.09003 * 109.47361 * 270.25696 * 22 21 20 36 36 H 1.09006 * 109.47121 * 30.25133 * 22 21 20 37 37 H 1.09002 * 109.47476 * 150.25753 * 22 21 20 38 38 H 0.97000 * 119.99631 * 180.02562 * 24 23 21 39 39 H 0.97003 * 119.99991 * 0.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1958 1.1941 0.0000 4 6 3.5903 1.1934 -0.0005 5 6 4.3332 2.4763 0.0000 6 6 4.0137 3.4706 -0.9219 7 6 4.7086 4.6630 -0.9177 8 6 5.7237 4.8760 -0.0006 9 6 6.0498 3.8979 0.9185 10 6 5.3632 2.6922 0.9232 11 8 5.6858 1.7281 1.8216 12 6 6.7582 1.9566 2.6060 13 1 7.2679 2.9077 2.5602 14 6 7.2065 0.9709 3.4716 15 7 6.5858 -0.1878 3.5272 16 14 8.6920 1.2878 4.5590 17 1 8.4177 2.4466 5.4462 18 1 8.9661 0.0850 5.3856 19 1 9.8734 1.5836 3.7093 20 6 4.2848 -0.0159 -0.0069 21 6 3.5919 -1.2075 -0.0015 22 6 4.3418 -2.5146 -0.0026 23 6 2.2016 -1.2043 -0.0006 24 7 1.5021 -2.4122 -0.0005 25 1 -0.3634 0.0000 -1.0276 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3633 0.8900 0.5139 28 1 1.6558 2.1294 0.0004 29 1 3.2234 3.3082 -1.6398 30 1 4.4602 5.4328 -1.6332 31 1 6.2632 5.8115 -0.0039 32 1 6.8430 4.0698 1.6310 33 1 6.8997 -0.8777 4.1326 34 1 5.3648 -0.0187 -0.0118 35 1 4.5219 -2.8293 -1.0305 36 1 5.2950 -2.3870 0.5105 37 1 3.7511 -3.2729 0.5113 38 1 0.5321 -2.4108 -0.0002 39 1 1.9860 -3.2529 -0.0008 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241885117.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:15 Heat of formation + Delta-G solvation = 12.714268 kcal Electronic energy + Delta-G solvation = -21751.582262 eV Core-core repulsion = 18624.056642 eV Total energy + Delta-G solvation = -3127.525620 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.52727 -38.57932 -36.29783 -34.31660 -33.07399 -32.24198 -30.89691 -29.02973 -28.21779 -26.15211 -26.05582 -25.23558 -22.27284 -21.38548 -20.23819 -19.67877 -17.88658 -16.86480 -16.76088 -16.48201 -15.07351 -14.52078 -14.44044 -13.90422 -13.78381 -13.63107 -13.40610 -13.22302 -13.03792 -12.81320 -12.52174 -12.33446 -12.29022 -11.65178 -11.58760 -11.41743 -11.24904 -11.22751 -10.85025 -10.73584 -10.48107 -10.34820 -10.30946 -9.92911 -9.26802 -8.79914 -8.09539 -7.90006 -7.28665 -6.60697 -6.39926 -3.98052 1.86445 2.08608 2.43360 2.58252 3.15294 3.16119 3.18279 3.99357 4.25008 4.39723 4.69914 5.14262 5.27296 5.30128 5.34768 5.47261 5.66660 5.72292 5.81757 5.84348 5.92211 5.97843 6.02856 6.08413 6.08813 6.21621 6.33965 6.36648 6.65357 6.76005 6.79993 6.81987 6.96019 7.10695 7.14498 7.30690 7.37147 7.42914 7.54211 7.59945 7.88519 7.96617 8.04336 8.09730 9.04783 9.76376 10.76468 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.012897 B = 0.006678 C = 0.004749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2170.513995 B = 4191.985072 C = 5895.096017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.173 4.173 3 C -0.074 4.074 4 C -0.064 4.064 5 C -0.118 4.118 6 C -0.067 4.067 7 C -0.215 4.215 8 C -0.075 4.075 9 C -0.235 4.235 10 C 0.161 3.839 11 O -0.164 6.164 12 C -0.394 4.394 13 H 0.089 0.911 14 C 0.042 3.958 15 N -0.855 5.855 16 Si 0.937 3.063 17 H -0.271 1.271 18 H -0.279 1.279 19 H -0.271 1.271 20 C -0.032 4.032 21 C -0.157 4.157 22 C -0.100 4.100 23 C 0.206 3.794 24 N -0.883 5.883 25 H 0.057 0.943 26 H 0.053 0.947 27 H 0.061 0.939 28 H 0.114 0.886 29 H 0.112 0.888 30 H 0.105 0.895 31 H 0.105 0.895 32 H 0.127 0.873 33 H 0.269 0.731 34 H 0.123 0.877 35 H 0.056 0.944 36 H 0.072 0.928 37 H 0.052 0.948 38 H 0.391 0.609 39 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.425 -1.275 -7.029 10.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.178 4.178 3 C -0.092 4.092 4 C -0.065 4.065 5 C -0.120 4.120 6 C -0.085 4.085 7 C -0.234 4.234 8 C -0.094 4.094 9 C -0.254 4.254 10 C 0.106 3.894 11 O -0.066 6.066 12 C -0.470 4.470 13 H 0.107 0.893 14 C -0.162 4.162 15 N -0.489 5.489 16 Si 0.761 3.239 17 H -0.196 1.196 18 H -0.204 1.204 19 H -0.196 1.196 20 C -0.051 4.051 21 C -0.161 4.161 22 C -0.157 4.157 23 C 0.103 3.897 24 N -0.426 5.426 25 H 0.076 0.924 26 H 0.072 0.928 27 H 0.080 0.920 28 H 0.132 0.868 29 H 0.130 0.870 30 H 0.123 0.877 31 H 0.123 0.877 32 H 0.144 0.856 33 H 0.078 0.922 34 H 0.141 0.859 35 H 0.074 0.926 36 H 0.091 0.909 37 H 0.071 0.929 38 H 0.219 0.781 39 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -7.472 -1.699 -6.824 10.261 hybrid contribution 0.693 0.030 0.737 1.012 sum -6.779 -1.669 -6.087 9.262 Atomic orbital electron populations 1.20493 0.92126 1.01710 1.01019 1.19060 0.94954 0.91768 1.12012 1.20728 0.93072 0.96302 0.99147 1.18323 0.92072 0.92026 1.04127 1.17874 0.99957 0.94993 0.99145 1.20721 0.98384 0.92585 0.96806 1.20508 1.01380 0.98283 1.03191 1.20774 0.96353 0.97587 0.94650 1.21107 1.05366 0.94931 1.04024 1.19375 0.92470 0.88802 0.88729 1.84006 1.43589 1.37790 1.41248 1.21268 1.05778 1.01572 1.18418 0.89325 1.25217 0.98766 0.94636 0.97619 1.70054 1.38898 1.04116 1.35879 0.85852 0.80382 0.78111 0.79511 1.19613 1.20367 1.19589 1.20882 0.99756 0.90303 0.94124 1.19192 0.91209 0.95804 1.09924 1.20534 1.00464 0.93893 1.00793 1.17334 0.90547 0.85775 0.96048 1.42492 1.08350 1.05272 1.86438 0.92396 0.92828 0.91974 0.86808 0.87046 0.87699 0.87664 0.85576 0.92155 0.85897 0.92573 0.90897 0.92939 0.78064 0.77814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.22 9.56 36.01 0.34 -0.87 16 2 C -0.17 -2.90 5.89 -104.47 -0.62 -3.52 16 3 C -0.07 -1.37 9.15 -39.27 -0.36 -1.73 16 4 C -0.06 -1.35 5.28 -104.87 -0.55 -1.91 16 5 C -0.12 -2.60 5.49 -104.73 -0.57 -3.17 16 6 C -0.07 -1.26 9.50 -39.27 -0.37 -1.63 16 7 C -0.21 -3.84 10.03 -39.59 -0.40 -4.24 16 8 C -0.08 -1.42 10.03 -39.55 -0.40 -1.82 16 9 C -0.23 -5.21 9.16 -39.43 -0.36 -5.57 16 10 C 0.16 3.94 6.56 -38.74 -0.25 3.68 16 11 O -0.16 -4.58 8.10 0.32 0.00 -4.58 16 12 C -0.39 -10.90 9.49 30.88 0.29 -10.61 16 13 H 0.09 2.29 5.21 -52.48 -0.27 2.02 16 14 C 0.04 1.15 5.49 -17.52 -0.10 1.05 16 15 N -0.86 -24.55 13.67 55.48 0.76 -23.79 16 16 Si 0.94 20.48 29.55 -169.99 -5.02 15.46 16 17 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 18 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 19 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 20 C -0.03 -0.69 8.42 -39.27 -0.33 -1.02 16 21 C -0.16 -2.97 5.89 -104.48 -0.62 -3.59 16 22 C -0.10 -1.61 9.56 36.00 0.34 -1.27 16 23 C 0.21 3.48 6.72 -83.75 -0.56 2.92 16 24 N -0.88 -11.27 8.88 32.44 0.29 -10.98 16 25 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.05 0.59 6.54 -51.93 -0.34 0.25 16 27 H 0.06 0.75 8.08 -51.93 -0.42 0.33 16 28 H 0.11 1.91 8.04 -52.49 -0.42 1.49 16 29 H 0.11 1.82 8.04 -52.49 -0.42 1.39 16 30 H 0.10 1.57 8.06 -52.49 -0.42 1.14 16 31 H 0.11 1.67 8.06 -52.49 -0.42 1.24 16 32 H 0.13 2.77 5.64 -52.49 -0.30 2.48 16 33 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 34 H 0.12 2.90 7.68 -52.49 -0.40 2.50 16 35 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.07 1.31 8.09 -51.93 -0.42 0.89 16 37 H 0.05 0.73 6.53 -51.93 -0.34 0.40 16 38 H 0.39 4.10 6.80 -40.82 -0.28 3.83 16 39 H 0.39 4.43 6.80 -40.82 -0.28 4.15 16 LS Contribution 325.91 15.07 4.91 4.91 Total: -1.00 -30.78 325.91 -8.29 -39.06 By element: Atomic # 1 Polarization: 17.93 SS G_CDS: -4.72 Total: 13.21 kcal Atomic # 6 Polarization: -28.78 SS G_CDS: -4.51 Total: -33.29 kcal Atomic # 7 Polarization: -35.82 SS G_CDS: 1.05 Total: -34.77 kcal Atomic # 8 Polarization: -4.58 SS G_CDS: 0.00 Total: -4.58 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -30.78 -8.29 -39.06 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241885117.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.778 kcal (2) G-P(sol) polarization free energy of solvation -30.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.064 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds