Wall clock time and date at job start Tue Mar 31 2020 05:48:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35665 * 117.00154 * 2 1 4 4 C 1.38023 * 120.19563 * 359.97438 * 3 2 1 5 5 C 1.39600 * 119.93182 * 179.97438 * 4 3 2 6 6 C 1.48048 * 119.83833 * 180.02562 * 5 4 3 7 7 C 1.39970 * 120.92531 * 359.69234 * 6 5 4 8 8 C 1.37947 * 118.99289 * 179.73209 * 7 6 5 9 9 C 1.50699 * 119.54561 * 180.25557 * 8 7 6 10 10 N 1.31933 * 120.90477 * 0.55729 * 8 7 6 11 11 C 1.31949 * 122.05226 * 359.71900 * 10 8 7 12 12 C 1.50700 * 119.54555 * 179.97438 * 11 10 8 13 13 C 1.37935 * 120.90228 * 359.97438 * 11 10 8 14 14 C 1.40064 * 120.32324 * 0.02562 * 5 4 3 15 15 C 1.36122 * 120.40341 * 359.97438 * 14 5 4 16 16 C 1.40907 * 120.05751 * 359.97438 * 15 14 5 17 17 C 1.40843 * 120.16050 * 180.02562 * 16 15 14 18 18 H 1.07998 * 119.99601 * 204.90951 * 17 16 15 19 19 C 1.40051 * 120.00015 * 24.90596 * 17 16 15 20 20 N 1.30801 * 119.99833 * 17.80236 * 19 17 16 21 21 Si 1.86797 * 120.00009 * 197.80741 * 19 17 16 22 22 H 1.48502 * 109.47335 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.47239 * 120.00058 * 21 19 17 24 24 H 1.48504 * 109.47009 * 239.99930 * 21 19 17 25 25 H 1.09000 * 109.47450 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.46898 * 300.00011 * 1 2 3 27 27 H 1.09005 * 109.47024 * 59.99414 * 1 2 3 28 28 H 1.08001 * 120.03474 * 0.03986 * 4 3 2 29 29 H 1.07995 * 120.50080 * 0.02562 * 7 6 5 30 30 H 1.09001 * 109.46777 * 270.30457 * 9 8 7 31 31 H 1.09000 * 109.47466 * 30.29984 * 9 8 7 32 32 H 1.08999 * 109.47254 * 150.30267 * 9 8 7 33 33 H 1.09002 * 109.46978 * 270.01959 * 12 11 10 34 34 H 1.08991 * 109.47376 * 30.01798 * 12 11 10 35 35 H 1.09005 * 109.47023 * 150.02111 * 12 11 10 36 36 H 1.08001 * 120.50536 * 180.02562 * 13 11 10 37 37 H 1.07997 * 119.79586 * 180.28136 * 14 5 4 38 38 H 1.07996 * 119.96911 * 180.02562 * 15 14 5 39 39 H 0.97000 * 119.99278 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0450 1.2088 0.0000 4 6 1.2973 2.3689 -0.0005 5 6 1.9368 3.6098 0.0000 6 6 1.1327 4.8529 0.0000 7 6 -0.2662 4.8048 -0.0070 8 6 -0.9759 5.9876 -0.0011 9 6 -2.4824 5.9503 -0.0026 10 7 -0.3539 7.1511 0.0000 11 6 0.9625 7.2414 0.0010 12 6 1.6142 8.6002 0.0015 13 6 1.7502 6.1091 0.0015 14 6 3.3354 3.6845 0.0006 15 6 4.0860 2.5489 0.0011 16 6 3.4577 1.2877 0.0016 17 6 4.2321 0.1113 0.0027 18 1 3.8206 -0.8064 -0.3908 19 6 5.5358 0.1316 0.5141 20 7 5.9174 1.1104 1.2933 21 14 6.7296 -1.2389 0.0831 22 1 6.0575 -2.2190 -0.8074 23 1 7.9104 -0.6665 -0.6120 24 1 7.1697 -1.9212 1.3265 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 0.2185 2.3167 -0.0003 29 1 -0.7819 3.8560 -0.0121 30 1 -2.8446 5.9415 -1.0307 31 1 -2.8242 5.0514 0.5106 32 1 -2.8683 6.8308 0.5110 33 1 1.7717 8.9280 -1.0260 34 1 0.9687 9.3125 0.5152 35 1 2.5736 8.5428 0.5158 36 1 2.8271 6.1904 0.0027 37 1 3.8213 4.6490 0.0056 38 1 5.1639 2.6147 0.0019 39 1 6.8202 1.1242 1.6477 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241991975.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:05 Heat of formation + Delta-G solvation = -0.277110 kcal Electronic energy + Delta-G solvation = -21237.010832 eV Core-core repulsion = 18108.921864 eV Total energy + Delta-G solvation = -3128.088968 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -39.84578 -38.68306 -36.32460 -34.34476 -33.37626 -32.26139 -29.41028 -29.07975 -28.79012 -26.77487 -26.14973 -25.37561 -22.22478 -21.70460 -20.37406 -19.83288 -17.74057 -16.57289 -16.08374 -15.60501 -15.25783 -14.75107 -14.69609 -14.37747 -14.23334 -14.00399 -13.22129 -13.07622 -12.80740 -12.65614 -12.52965 -12.23086 -12.04430 -11.90926 -11.71320 -11.58935 -11.34708 -11.30597 -11.06429 -10.77996 -10.62802 -10.34675 -9.83837 -9.74860 -9.50245 -8.98091 -8.93568 -8.32709 -7.48360 -7.20890 -6.94227 -4.42863 1.47117 1.62210 2.71924 2.91203 2.96763 3.02994 3.12555 3.76702 4.17462 4.39014 4.56513 4.57631 5.09340 5.21347 5.44359 5.50211 5.61974 5.67827 5.70805 5.75002 5.77038 5.79832 5.81804 5.88398 5.90511 5.93449 6.06390 6.20742 6.32935 6.42978 6.55477 6.67520 6.83463 6.88384 7.12959 7.18907 7.27234 7.53897 7.60207 7.89498 7.97903 8.23076 8.45096 8.52124 8.56984 8.87086 9.89499 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.021377 B = 0.004459 C = 0.003737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.490437 B = 6277.409282 C = 7491.268247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.312 6.312 3 C 0.005 3.995 4 C -0.141 4.141 5 C -0.189 4.189 6 C 0.068 3.932 7 C -0.205 4.205 8 C 0.129 3.871 9 C -0.098 4.098 10 N -0.519 5.519 11 C 0.130 3.870 12 C -0.098 4.098 13 C -0.202 4.202 14 C -0.083 4.083 15 C -0.161 4.161 16 C 0.112 3.888 17 C -0.420 4.420 18 H 0.090 0.910 19 C 0.070 3.930 20 N -0.773 5.773 21 Si 0.915 3.085 22 H -0.257 1.257 23 H -0.269 1.269 24 H -0.272 1.272 25 H 0.083 0.917 26 H 0.041 0.959 27 H 0.040 0.960 28 H 0.102 0.898 29 H 0.124 0.876 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.129 0.871 37 H 0.095 0.905 38 H 0.127 0.873 39 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.155 4.564 -1.656 7.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.227 6.227 3 C -0.039 4.039 4 C -0.161 4.161 5 C -0.190 4.190 6 C 0.060 3.940 7 C -0.225 4.225 8 C -0.007 4.007 9 C -0.155 4.155 10 N -0.232 5.232 11 C -0.007 4.007 12 C -0.155 4.155 13 C -0.222 4.222 14 C -0.102 4.102 15 C -0.180 4.180 16 C 0.109 3.891 17 C -0.448 4.448 18 H 0.108 0.892 19 C -0.150 4.150 20 N -0.397 5.397 21 Si 0.738 3.262 22 H -0.180 1.180 23 H -0.194 1.194 24 H -0.197 1.197 25 H 0.101 0.899 26 H 0.059 0.941 27 H 0.059 0.941 28 H 0.120 0.880 29 H 0.142 0.858 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.090 0.910 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.146 0.854 37 H 0.113 0.887 38 H 0.144 0.856 39 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -6.353 5.219 -1.499 8.358 hybrid contribution 0.822 -1.219 -0.027 1.471 sum -5.531 4.000 -1.527 6.994 Atomic orbital electron populations 1.22755 0.81556 1.01923 1.00002 1.85962 1.18367 1.27958 1.90404 1.19040 0.92226 0.82725 1.09895 1.20666 0.97434 0.91930 1.06052 1.17665 0.92358 0.89721 1.19298 1.19277 0.92397 0.93160 0.89117 1.21841 0.94176 0.98643 1.07875 1.20943 0.96239 0.88378 0.95168 1.20625 0.89787 1.02686 1.02409 1.67188 1.10451 1.28244 1.17335 1.20965 0.89295 0.95345 0.95061 1.20632 0.99837 0.92623 1.02450 1.21903 1.00860 0.92135 1.07315 1.20466 0.92342 0.97458 0.99915 1.20755 0.99717 0.90452 1.07081 1.17203 0.87501 0.94138 0.90295 1.19710 0.96340 0.96973 1.31782 0.89222 1.26089 0.99045 0.97269 0.92641 1.69816 1.19490 1.30057 1.20334 0.86136 0.79644 0.80838 0.79558 1.18010 1.19402 1.19681 0.89856 0.94086 0.94147 0.88031 0.85830 0.91042 0.91224 0.91052 0.91013 0.91087 0.91079 0.85351 0.88676 0.85581 0.90289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.56 9.81 101.05 0.99 1.55 16 2 O -0.31 -6.96 9.77 -18.70 -0.18 -7.14 16 3 C 0.01 0.13 6.71 -38.42 -0.26 -0.13 16 4 C -0.14 -3.12 8.42 -39.15 -0.33 -3.45 16 5 C -0.19 -4.18 5.89 -104.68 -0.62 -4.79 16 6 C 0.07 1.35 5.91 -104.57 -0.62 0.73 16 7 C -0.21 -3.71 9.13 -39.04 -0.36 -4.07 16 8 C 0.13 2.18 6.78 -82.66 -0.56 1.62 16 9 C -0.10 -1.23 10.16 36.01 0.37 -0.86 16 10 N -0.52 -9.20 10.17 -5.84 -0.06 -9.26 16 11 C 0.13 2.20 6.78 -82.65 -0.56 1.64 16 12 C -0.10 -1.25 10.16 36.01 0.37 -0.89 16 13 C -0.20 -3.69 9.13 -39.04 -0.36 -4.05 16 14 C -0.08 -1.88 9.37 -39.66 -0.37 -2.25 16 15 C -0.16 -3.96 8.62 -39.33 -0.34 -4.30 16 16 C 0.11 2.88 5.58 -106.67 -0.60 2.29 16 17 C -0.42 -10.67 8.70 -37.92 -0.33 -11.00 16 18 H 0.09 2.26 7.64 -52.49 -0.40 1.85 16 19 C 0.07 1.65 5.13 -17.31 -0.09 1.56 16 20 N -0.77 -18.66 10.97 55.55 0.61 -18.05 16 21 Si 0.91 17.55 29.60 -169.99 -5.03 12.52 16 22 H -0.26 -4.92 7.11 56.52 0.40 -4.52 16 23 H -0.27 -5.04 7.11 56.52 0.40 -4.64 16 24 H -0.27 -5.13 7.11 56.52 0.40 -4.73 16 25 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 26 H 0.04 0.64 7.66 -51.93 -0.40 0.24 16 27 H 0.04 0.62 7.66 -51.93 -0.40 0.22 16 28 H 0.10 1.97 4.50 -52.49 -0.24 1.74 16 29 H 0.12 2.05 6.32 -52.49 -0.33 1.72 16 30 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 31 H 0.07 0.76 8.08 -51.93 -0.42 0.34 16 32 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 33 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 34 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 35 H 0.07 0.80 8.07 -51.93 -0.42 0.38 16 36 H 0.13 2.18 6.31 -52.49 -0.33 1.85 16 37 H 0.10 1.93 6.25 -52.49 -0.33 1.60 16 38 H 0.13 3.14 6.16 -52.49 -0.32 2.82 16 39 H 0.29 6.19 8.29 -40.82 -0.34 5.85 16 LS Contribution 325.78 15.07 4.91 4.91 Total: -1.00 -28.14 325.78 -8.25 -36.39 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: -4.83 Total: 7.06 kcal Atomic # 6 Polarization: -22.76 SS G_CDS: -3.66 Total: -26.41 kcal Atomic # 7 Polarization: -27.86 SS G_CDS: 0.55 Total: -27.31 kcal Atomic # 8 Polarization: -6.96 SS G_CDS: -0.18 Total: -7.14 kcal Atomic # 14 Polarization: 17.55 SS G_CDS: -5.03 Total: 12.52 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -28.14 -8.25 -36.39 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241991975.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.113 kcal (2) G-P(sol) polarization free energy of solvation -28.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds