Wall clock time and date at job start Tue Mar 31 2020 05:47:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35583 * 116.99889 * 2 1 4 4 C 1.38530 * 120.08437 * 359.97438 * 3 2 1 5 5 C 1.38008 * 120.31270 * 180.02562 * 4 3 2 6 6 C 1.39938 * 120.47228 * 359.95616 * 5 4 3 7 7 C 1.48322 * 119.92167 * 180.02562 * 6 5 4 8 8 C 1.39794 * 120.90722 * 174.36175 * 7 6 5 9 9 C 1.37956 * 119.01891 * 179.73127 * 8 7 6 10 10 C 1.50710 * 119.55853 * 180.25183 * 9 8 7 11 11 N 1.31930 * 120.88545 * 0.55800 * 9 8 7 12 12 C 1.31939 * 122.01071 * 359.71772 * 11 9 8 13 13 C 1.50690 * 119.56321 * 179.97438 * 12 11 9 14 14 C 1.37965 * 120.87721 * 359.97438 * 12 11 9 15 15 C 1.38657 * 120.15660 * 0.02565 * 6 5 4 16 16 C 1.40517 * 119.68314 * 359.76310 * 15 6 5 17 17 C 1.41184 * 120.22915 * 180.25813 * 16 15 6 18 18 H 1.07999 * 120.00217 * 151.36038 * 17 16 15 19 19 C 1.39914 * 120.00287 * 331.35742 * 17 16 15 20 20 N 1.30876 * 120.00285 * 161.32847 * 19 17 16 21 21 Si 1.86804 * 119.99708 * 341.32699 * 19 17 16 22 22 H 1.48507 * 109.46721 * 90.73091 * 21 19 17 23 23 H 1.48493 * 109.47220 * 210.72718 * 21 19 17 24 24 H 1.48495 * 109.47089 * 330.73211 * 21 19 17 25 25 H 1.09008 * 109.47266 * 300.00453 * 1 2 3 26 26 H 1.08997 * 109.47171 * 60.00264 * 1 2 3 27 27 H 1.08998 * 109.47222 * 180.02562 * 1 2 3 28 28 H 1.08005 * 119.84266 * 359.97438 * 4 3 2 29 29 H 1.08002 * 119.76078 * 179.97438 * 5 4 3 30 30 H 1.08003 * 120.49214 * 359.97438 * 8 7 6 31 31 H 1.08996 * 109.47227 * 270.30363 * 10 9 8 32 32 H 1.08995 * 109.46806 * 30.30421 * 10 9 8 33 33 H 1.09001 * 109.46697 * 150.30165 * 10 9 8 34 34 H 1.09004 * 109.47544 * 270.01991 * 13 12 11 35 35 H 1.09005 * 109.47497 * 30.01938 * 13 12 11 36 36 H 1.09003 * 109.47676 * 150.02034 * 13 12 11 37 37 H 1.07999 * 120.48515 * 180.02562 * 14 12 11 38 38 H 1.07996 * 120.16121 * 180.02562 * 15 6 5 39 39 H 0.97000 * 120.00054 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0446 1.2081 0.0000 4 6 1.2918 2.3710 -0.0005 5 6 1.9134 3.6031 -0.0011 6 6 3.3098 3.6935 -0.0002 7 6 3.9651 5.0241 -0.0002 8 6 5.3531 5.1409 0.1186 9 6 5.9222 6.3976 0.1084 10 6 7.4179 6.5374 0.2299 11 7 5.1742 7.4789 -0.0002 12 6 3.8610 7.4129 -0.1087 13 6 3.0601 8.6836 -0.2291 14 6 3.2112 6.1958 -0.1135 15 6 4.0823 2.5420 0.0008 16 6 3.4563 1.2841 0.0058 17 6 4.2317 0.1042 0.0123 18 1 3.8417 -0.7958 0.4643 19 6 5.5053 0.1009 -0.5669 20 7 6.3625 -0.8383 -0.2572 21 14 5.9822 1.4370 -1.7821 22 1 6.6058 2.5701 -1.0524 23 1 6.9503 0.8890 -2.7657 24 1 4.7696 1.9142 -2.4941 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 0.2133 2.3131 -0.0014 29 1 1.3178 4.5041 -0.0019 30 1 5.9712 4.2602 0.2129 31 1 7.6914 6.6136 1.2822 32 1 7.9012 5.6645 -0.2088 33 1 7.7427 7.4352 -0.2959 34 1 2.7805 9.0326 0.7650 35 1 3.6603 9.4458 -0.7262 36 1 2.1600 8.4920 -0.8133 37 1 2.1360 6.1491 -0.2031 38 1 5.1601 2.6117 0.0019 39 1 7.2457 -0.8404 -0.6585 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241992648.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:52 Heat of formation + Delta-G solvation = 4.647169 kcal Electronic energy + Delta-G solvation = -21536.584011 eV Core-core repulsion = 18408.708576 eV Total energy + Delta-G solvation = -3127.875436 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.131 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.09007 -38.89979 -36.58222 -33.96786 -33.52669 -32.57910 -30.69907 -28.91275 -28.48999 -26.76254 -26.68258 -24.95292 -22.58302 -21.97057 -20.94583 -19.54602 -17.58962 -17.19326 -16.18077 -15.89684 -15.22404 -14.87783 -14.85542 -14.58617 -14.50539 -13.71468 -13.39418 -13.16192 -13.05944 -12.94328 -12.55932 -12.36557 -12.26999 -12.02664 -11.94117 -11.69405 -11.37893 -11.30334 -11.05681 -10.78228 -10.72155 -10.52025 -9.89035 -9.72931 -9.29151 -9.16568 -9.12151 -8.48584 -7.87666 -7.08439 -6.99768 -4.45720 1.25023 1.43241 2.44152 2.69730 3.03284 3.16160 3.26300 3.90902 4.03755 4.24053 4.41427 4.48172 4.93115 4.98227 5.26118 5.35466 5.46567 5.55711 5.62064 5.62629 5.66025 5.69039 5.69747 5.72961 5.76304 5.83601 5.92563 5.99364 6.13226 6.22174 6.39325 6.44569 6.47430 6.69430 6.87845 7.04116 7.07488 7.30199 7.39915 7.62016 7.83441 8.11133 8.30864 8.32778 8.69402 8.71103 10.02013 Molecular weight = 283.13amu Principal moments of inertia in cm(-1) A = 0.014736 B = 0.006499 C = 0.004705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1899.608038 B = 4307.300559 C = 5949.346716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.305 6.305 3 C 0.047 3.953 4 C -0.176 4.176 5 C -0.184 4.184 6 C -0.055 4.055 7 C 0.036 3.964 8 C -0.181 4.181 9 C 0.129 3.871 10 C -0.101 4.101 11 N -0.502 5.502 12 C 0.125 3.875 13 C -0.098 4.098 14 C -0.181 4.181 15 C -0.203 4.203 16 C 0.076 3.924 17 C -0.427 4.427 18 H 0.097 0.903 19 C 0.083 3.917 20 N -0.802 5.802 21 Si 0.904 3.096 22 H -0.265 1.265 23 H -0.289 1.289 24 H -0.247 1.247 25 H 0.043 0.957 26 H 0.043 0.957 27 H 0.086 0.914 28 H 0.106 0.894 29 H 0.102 0.898 30 H 0.135 0.865 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.071 0.929 37 H 0.133 0.867 38 H 0.115 0.885 39 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.290 10.613 -0.663 11.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.219 6.219 3 C 0.002 3.998 4 C -0.195 4.195 5 C -0.203 4.203 6 C -0.056 4.056 7 C 0.029 3.971 8 C -0.201 4.201 9 C -0.008 4.008 10 C -0.158 4.158 11 N -0.214 5.214 12 C -0.012 4.012 13 C -0.156 4.156 14 C -0.201 4.201 15 C -0.222 4.222 16 C 0.072 3.928 17 C -0.455 4.455 18 H 0.115 0.885 19 C -0.136 4.136 20 N -0.426 5.426 21 Si 0.731 3.269 22 H -0.192 1.192 23 H -0.216 1.216 24 H -0.170 1.170 25 H 0.061 0.939 26 H 0.062 0.938 27 H 0.104 0.896 28 H 0.124 0.876 29 H 0.120 0.880 30 H 0.153 0.847 31 H 0.094 0.906 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.091 0.909 36 H 0.090 0.910 37 H 0.151 0.849 38 H 0.132 0.868 39 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -3.552 11.044 -0.669 11.621 hybrid contribution -0.411 -0.324 -0.484 0.713 sum -3.963 10.720 -1.153 11.487 Atomic orbital electron populations 1.22828 0.81123 1.02311 1.00169 1.86015 1.18718 1.27774 1.89376 1.19294 0.92103 0.82978 1.05468 1.20641 0.97976 0.92497 1.08396 1.20174 0.92600 0.95853 1.11707 1.18190 0.93092 0.89996 1.04296 1.19431 0.92649 0.93479 0.91561 1.22162 0.95269 0.98641 1.04045 1.21056 0.96416 0.88315 0.95029 1.20679 0.89281 1.03091 1.02787 1.67229 1.06288 1.32727 1.15162 1.21052 0.90023 0.94765 0.95396 1.20643 0.98522 0.93859 1.02531 1.21966 1.01083 0.92039 1.04969 1.20938 0.98281 0.90944 1.12079 1.17054 0.88507 0.93290 0.93900 1.19324 0.97442 0.97595 1.31178 0.88463 1.26137 0.95015 0.96200 0.96225 1.69704 1.05746 1.31727 1.35436 0.86476 0.79724 0.80208 0.80489 1.19173 1.21579 1.16993 0.93873 0.93827 0.89569 0.87583 0.88025 0.84681 0.90607 0.90848 0.90775 0.90803 0.90860 0.90984 0.84895 0.86797 0.90328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 9.81 101.05 0.99 1.48 16 2 O -0.31 -6.68 9.81 -18.44 -0.18 -6.86 16 3 C 0.05 1.08 6.72 -38.28 -0.26 0.83 16 4 C -0.18 -3.58 9.01 -39.56 -0.36 -3.94 16 5 C -0.18 -3.69 9.44 -39.03 -0.37 -4.06 16 6 C -0.06 -1.20 5.87 -104.96 -0.62 -1.82 16 7 C 0.04 0.71 5.90 -104.59 -0.62 0.09 16 8 C -0.18 -3.43 9.11 -39.10 -0.36 -3.78 16 9 C 0.13 2.19 6.78 -82.65 -0.56 1.63 16 10 C -0.10 -1.34 10.16 36.01 0.37 -0.97 16 11 N -0.50 -8.57 10.17 -5.83 -0.06 -8.63 16 12 C 0.12 1.97 6.78 -82.65 -0.56 1.41 16 13 C -0.10 -1.12 10.16 36.00 0.37 -0.75 16 14 C -0.18 -3.05 9.12 -39.10 -0.36 -3.41 16 15 C -0.20 -4.82 6.68 -38.57 -0.26 -5.08 16 16 C 0.08 1.92 5.14 -106.73 -0.55 1.37 16 17 C -0.43 -11.56 9.19 -37.84 -0.35 -11.91 16 18 H 0.10 2.81 7.87 -52.49 -0.41 2.40 16 19 C 0.08 2.16 5.40 -17.33 -0.09 2.07 16 20 N -0.80 -21.11 13.93 55.55 0.77 -20.34 16 21 Si 0.90 20.59 24.55 -169.99 -4.17 16.41 16 22 H -0.27 -5.68 5.84 56.52 0.33 -5.35 16 23 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 24 H -0.25 -5.84 7.04 56.52 0.40 -5.45 16 25 H 0.04 0.61 7.66 -51.92 -0.40 0.21 16 26 H 0.04 0.62 7.65 -51.93 -0.40 0.22 16 27 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 28 H 0.11 1.82 6.27 -52.48 -0.33 1.49 16 29 H 0.10 1.75 6.30 -52.49 -0.33 1.42 16 30 H 0.14 2.59 5.75 -52.48 -0.30 2.29 16 31 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.07 0.91 8.08 -51.93 -0.42 0.49 16 33 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 34 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 36 H 0.07 0.69 8.08 -51.93 -0.42 0.27 16 37 H 0.13 1.96 6.35 -52.49 -0.33 1.63 16 38 H 0.11 2.69 2.78 -52.49 -0.15 2.54 16 39 H 0.29 6.80 8.30 -40.82 -0.34 6.47 16 LS Contribution 319.52 15.07 4.82 4.82 Total: -1.00 -29.18 319.52 -7.21 -36.39 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: -4.81 Total: 5.04 kcal Atomic # 6 Polarization: -23.26 SS G_CDS: -3.57 Total: -26.83 kcal Atomic # 7 Polarization: -29.68 SS G_CDS: 0.71 Total: -28.96 kcal Atomic # 8 Polarization: -6.68 SS G_CDS: -0.18 Total: -6.86 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -4.17 Total: 16.41 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -29.18 -7.21 -36.39 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241992648.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.035 kcal (2) G-P(sol) polarization free energy of solvation -29.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.388 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds